Wall clock time and date at job start Tue Mar 31 2020 22:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48502 * 109.47323 * 274.35143 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.35364 * 3 2 1 6 6 H 1.48496 * 109.47300 * 154.35181 * 3 2 1 7 7 C 1.38823 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99818 * 162.59686 * 7 2 1 9 9 N 1.36929 * 119.99710 * 342.59309 * 7 2 1 10 10 C 1.46932 * 120.62923 * 152.28799 * 9 7 2 11 11 C 1.53193 * 108.89365 * 126.33970 * 10 9 7 12 12 C 1.53349 * 109.14947 * 54.58000 * 11 10 9 13 13 N 1.46500 * 109.42211 * 178.67019 * 12 11 10 14 14 C 1.34771 * 120.00217 * 275.13086 * 13 12 11 15 15 O 1.21568 * 120.00209 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99801 * 179.97438 * 14 13 12 17 17 C 1.38373 * 119.99784 * 179.97438 * 16 14 13 18 18 N 1.30127 * 124.74454 * 0.02744 * 17 16 14 19 19 C 1.30871 * 117.28958 * 179.97438 * 18 17 16 20 20 C 1.36708 * 114.02395 * 0.02562 * 19 18 17 21 21 C 1.46317 * 126.12237 * 180.02562 * 20 19 18 22 22 N 1.34772 * 119.99787 * 179.97438 * 21 20 19 23 23 O 1.21730 * 119.99818 * 359.97438 * 21 20 19 24 24 S 1.70924 * 124.74292 * 179.72722 * 17 16 14 25 25 C 1.53038 * 109.60966 * 298.71388 * 12 11 10 26 26 C 1.46927 * 120.63500 * 332.30825 * 9 7 2 27 27 H 0.97000 * 119.99465 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.58789 * 246.20114 * 10 9 7 29 29 H 1.09000 * 109.58152 * 6.48462 * 10 9 7 30 30 H 1.08996 * 109.49449 * 174.66041 * 11 10 9 31 31 H 1.08996 * 109.49932 * 294.75815 * 11 10 9 32 32 H 1.09005 * 109.42157 * 58.74728 * 12 11 10 33 33 H 0.97001 * 119.99658 * 95.12721 * 13 12 11 34 34 H 0.96992 * 120.00284 * 0.02562 * 16 14 13 35 35 H 1.08003 * 122.98734 * 179.97438 * 19 18 17 36 36 H 0.97001 * 120.00254 * 0.02562 * 22 21 20 37 37 H 0.96995 * 119.99868 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.49898 * 301.42152 * 25 12 11 39 39 H 1.09001 * 109.50239 * 181.32239 * 25 12 11 40 40 H 1.08997 * 109.58712 * 353.38030 * 26 9 7 41 41 H 1.09003 * 109.58223 * 113.65521 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4059 2.0994 -1.3960 5 1 1.4969 2.6243 0.7900 6 1 3.5908 1.4151 0.6060 7 6 2.0102 -1.2023 -0.0005 8 1 3.0531 -1.2236 -0.2803 9 7 1.3724 -2.3611 0.3537 10 6 1.8185 -3.6547 -0.1814 11 6 2.0771 -4.6120 0.9864 12 6 0.8196 -4.6900 1.8607 13 7 1.0495 -5.6285 2.9619 14 6 0.8486 -6.9481 2.7757 15 8 0.4763 -7.3596 1.6941 16 7 1.0606 -7.8115 3.7887 17 6 0.8538 -9.1663 3.5976 18 7 0.4572 -9.7059 2.4819 19 6 0.3092 -11.0061 2.4636 20 6 0.6012 -11.6163 3.6515 21 6 0.5271 -13.0518 3.9250 22 7 0.8453 -13.5222 5.1472 23 8 0.1781 -13.8211 3.0485 24 16 1.0908 -10.3657 4.7920 25 6 0.5025 -3.3049 2.4290 26 6 0.2288 -2.3345 1.2757 27 1 -0.4849 0.8401 0.0004 28 1 1.0455 -4.0685 -0.8288 29 1 2.7374 -3.5171 -0.7513 30 1 2.3168 -5.6021 0.5989 31 1 2.9115 -4.2421 1.5822 32 1 -0.0201 -5.0361 1.2579 33 1 1.3462 -5.3001 3.8250 34 1 1.3572 -7.4831 4.6517 35 1 -0.0156 -11.5486 1.5880 36 1 1.1230 -12.9091 5.8457 37 1 0.7965 -14.4738 5.3284 38 1 1.3517 -2.9474 3.0114 39 1 -0.3777 -3.3669 3.0689 40 1 0.1000 -1.3262 1.6692 41 1 -0.6744 -2.6382 0.7463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675575520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:12 Heat of formation + Delta-G solvation = -14.720902 kcal Electronic energy + Delta-G solvation = -26143.773243 eV Core-core repulsion = 22185.437639 eV Total energy + Delta-G solvation = -3958.335604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92173 -40.87165 -39.93655 -39.01555 -36.28764 -35.94568 -34.80600 -33.91460 -31.86447 -31.31813 -30.55855 -27.39812 -26.39324 -24.45298 -23.90768 -23.46605 -22.37059 -21.22258 -20.65003 -20.55157 -19.36836 -18.64294 -18.42280 -17.49357 -17.07699 -17.03379 -16.84109 -16.38554 -16.06023 -15.81351 -15.57315 -15.36646 -15.32341 -15.10790 -14.83103 -14.72192 -14.30904 -14.07422 -13.21326 -13.01467 -12.72872 -12.61340 -12.51597 -12.28352 -12.12041 -11.99614 -11.85954 -11.79023 -11.55433 -11.45643 -11.30017 -10.84220 -10.55441 -10.54057 -10.49191 -10.11132 -9.33985 -8.70828 -7.87371 -5.32123 -0.85147 -0.34866 0.32710 1.32479 1.37345 1.49140 1.50479 1.60619 2.01819 2.21527 2.44617 2.52868 2.78443 3.28814 3.51518 3.67336 3.88724 3.95008 4.04239 4.18918 4.33036 4.46786 4.65259 4.66577 4.78640 4.85300 4.98044 5.04331 5.08633 5.15957 5.29502 5.45651 5.49166 5.53800 5.65967 5.74564 5.79063 6.24182 6.39526 6.52533 6.93674 7.15264 7.17074 7.38841 7.84806 8.37408 9.19865 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.044140 B = 0.001904 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.191291 B =14703.462277 C =14919.618964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.143 3.857 11 C -0.124 4.124 12 C 0.182 3.818 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.572 6.572 16 N -0.623 5.623 17 C 0.283 3.717 18 N -0.529 5.529 19 C 0.149 3.851 20 C -0.349 4.349 21 C 0.609 3.391 22 N -0.827 5.827 23 O -0.578 6.578 24 S 0.286 5.714 25 C -0.126 4.126 26 C 0.176 3.824 27 H 0.251 0.749 28 H 0.004 0.996 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.416 0.584 34 H 0.442 0.558 35 H 0.183 0.817 36 H 0.413 0.587 37 H 0.419 0.581 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.065 0.935 41 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 -22.005 21.340 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.076 3.924 13 N -0.367 5.367 14 C 0.391 3.609 15 O -0.445 6.445 16 N -0.278 5.278 17 C -0.083 4.083 18 N -0.250 5.250 19 C -0.011 4.011 20 C -0.476 4.476 21 C 0.394 3.606 22 N -0.392 5.392 23 O -0.459 6.459 24 S 0.538 5.462 25 C -0.166 4.166 26 C 0.050 3.950 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.284 0.716 35 H 0.200 0.800 36 H 0.244 0.756 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 4.376 -22.019 20.356 30.305 hybrid contribution 0.045 0.871 -0.444 0.979 sum 4.422 -21.149 19.912 29.382 Atomic orbital electron populations 1.70189 1.06686 1.25933 1.55342 1.25809 0.96033 1.01533 1.01223 0.85251 0.78298 0.79549 0.77248 1.21716 1.21705 1.19195 1.19513 0.93030 0.85857 1.40823 0.91474 1.44361 1.36002 1.01965 1.50849 1.20959 0.97279 0.86031 0.94009 1.22235 0.97934 0.98502 0.97718 1.20637 0.97071 0.87806 0.86851 1.45096 1.71751 1.03287 1.16599 1.16166 0.79057 0.81851 0.83795 1.91075 1.50816 1.77273 1.25361 1.41931 1.68444 1.01197 1.16240 1.24021 0.98791 0.91019 0.94444 1.66413 1.21339 1.11921 1.25352 1.22350 0.93795 0.86931 0.98031 1.25736 1.23150 0.98855 0.99821 1.16614 0.75908 0.85051 0.83073 1.43481 1.70165 1.13784 1.11729 1.90890 1.49934 1.58262 1.46845 1.82982 1.61480 0.92347 1.09343 1.22251 1.02323 0.93066 0.98912 1.20600 0.87635 0.98001 0.88761 0.94025 0.97758 0.92504 0.92480 0.91054 0.92506 0.74663 0.71555 0.79968 0.75586 0.74740 0.90544 0.90134 0.91645 0.98882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.55 11.19 21.65 0.24 -54.31 16 2 C -0.05 -2.78 4.91 84.87 0.42 -2.36 16 3 Si 0.97 43.87 29.59 68.60 2.03 45.90 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.26 -14.17 9.58 84.04 0.81 -13.37 16 8 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 9 N -0.61 -30.13 3.00 -699.08 -2.09 -32.22 16 10 C 0.14 6.16 6.50 86.36 0.56 6.72 16 11 C -0.12 -4.26 5.68 30.78 0.17 -4.08 16 12 C 0.18 5.78 2.42 45.12 0.11 5.89 16 13 N -0.71 -16.10 5.08 -457.22 -2.32 -18.42 16 14 C 0.69 18.27 8.49 179.06 1.52 19.79 16 15 O -0.57 -21.73 14.60 -3.93 -0.06 -21.79 16 16 N -0.62 -10.39 5.38 -327.70 -1.76 -12.16 16 17 C 0.28 5.54 7.98 179.28 1.43 6.97 16 18 N -0.53 -14.65 8.55 -200.28 -1.71 -16.36 16 19 C 0.15 3.54 11.15 84.48 0.94 4.48 16 20 C -0.35 -6.05 6.50 24.01 0.16 -5.89 16 21 C 0.61 10.59 8.05 86.34 0.69 11.29 16 22 N -0.83 -5.87 8.87 -176.64 -1.57 -7.44 16 23 O -0.58 -15.34 17.70 -4.45 -0.08 -15.42 16 24 S 0.29 2.66 22.33 -56.49 -1.26 1.40 16 25 C -0.13 -4.13 5.55 30.67 0.17 -3.96 16 26 C 0.18 8.17 5.31 86.36 0.46 8.62 16 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.18 7.58 -2.38 -0.02 2.16 16 33 H 0.42 5.78 8.62 -92.71 -0.80 4.99 16 34 H 0.44 2.65 8.83 -92.71 -0.82 1.83 16 35 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.41 0.45 8.00 -92.71 -0.74 -0.29 16 37 H 0.42 1.78 8.93 -92.71 -0.83 0.96 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 3.39 6.04 -2.39 -0.01 3.38 16 41 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -83.99 358.78 -3.20 -87.19 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.05 Total: 9.52 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 7.44 Total: 34.10 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -9.22 Total: -140.91 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.14 Total: -37.20 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.26 Total: 1.40 kcal Total: -83.99 -3.20 -87.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675575520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.472 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds