Wall clock time and date at job start Tue Mar 31 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00362 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72203 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72051 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72086 * 3 2 1 7 7 C 1.38803 * 119.99820 * 179.72030 * 2 1 3 8 8 H 1.08001 * 120.00210 * 0.28248 * 7 2 1 9 9 S 1.76201 * 120.00168 * 180.27733 * 7 2 1 10 10 C 1.80999 * 100.00238 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00265 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00259 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47318 * 179.97438 * 14 13 11 16 16 H 1.09006 * 112.84873 * 43.80478 * 15 14 13 17 17 C 1.53775 * 113.61791 * 175.00026 * 15 14 13 18 18 C 1.53781 * 87.08297 * 139.98468 * 17 15 14 19 19 H 1.09008 * 113.61601 * 220.02353 * 18 17 15 20 20 N 1.46491 * 113.61848 * 89.11898 * 18 17 15 21 21 C 1.34775 * 120.00405 * 155.00437 * 20 18 17 22 22 O 1.21553 * 119.99738 * 359.97438 * 21 20 18 23 23 C 1.47873 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.34549 * 126.04389 * 179.97438 * 23 21 20 25 25 C 1.30880 * 107.26703 * 179.97438 * 24 23 21 26 26 N 1.34588 * 107.62212 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.74170 * 180.02562 * 26 25 24 28 28 N 1.28851 * 108.50357 * 359.72922 * 26 25 24 29 29 C 1.53782 * 87.08071 * 334.56802 * 18 17 15 30 30 H 0.97004 * 119.99711 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47342 * 300.00378 * 10 9 7 32 32 H 1.09001 * 109.47104 * 59.99990 * 10 9 7 33 33 H 0.97010 * 119.99644 * 359.97438 * 13 11 10 34 34 H 1.08992 * 109.47267 * 299.99796 * 14 13 11 35 35 H 1.09001 * 109.47023 * 59.99818 * 14 13 11 36 36 H 1.08994 * 113.61418 * 254.53035 * 17 15 14 37 37 H 1.09001 * 113.61188 * 25.43627 * 17 15 14 38 38 H 0.97005 * 119.99751 * 334.99725 * 20 18 17 39 39 H 1.07996 * 126.18671 * 179.97438 * 25 24 23 40 40 H 1.08998 * 113.61732 * 270.88714 * 29 18 17 41 41 H 1.08995 * 113.61670 * 139.98233 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.5037 2.0429 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0102 -1.2021 0.0059 8 1 1.4702 -2.1374 0.0058 9 16 3.7722 -1.2022 0.0133 10 6 4.0865 -2.9846 0.0182 11 6 5.5729 -3.2326 0.0255 12 8 6.3439 -2.2965 0.0268 13 7 6.0455 -4.4948 0.0296 14 6 7.4905 -4.7359 0.0362 15 6 7.7562 -6.2427 0.0405 16 1 7.1187 -6.7869 -0.6564 17 6 9.2459 -6.6059 -0.0752 18 6 8.9754 -7.7132 0.9570 19 1 9.7705 -7.8268 1.6940 20 7 8.5664 -8.9862 0.3586 21 6 8.7766 -10.1408 1.0213 22 8 9.3059 -10.1258 2.1154 23 6 8.3642 -11.4258 0.4170 24 7 8.5149 -12.6442 0.9676 25 6 8.0250 -13.5156 0.1229 26 7 7.5733 -12.8361 -0.9474 27 1 7.1575 -13.2262 -1.7322 28 7 7.7805 -11.5795 -0.7513 29 6 7.7967 -6.8572 1.4497 30 1 -0.4850 0.8401 -0.0004 31 1 3.6398 -3.4299 0.9071 32 1 3.6473 -3.4335 -0.8728 33 1 5.4288 -5.2437 0.0282 34 1 7.9372 -4.2904 -0.8525 35 1 7.9296 -4.2874 0.9274 36 1 9.5280 -6.9844 -1.0577 37 1 9.9150 -5.8254 0.2869 38 1 8.1442 -8.9982 -0.5146 39 1 7.9904 -14.5863 0.2596 40 1 8.0695 -6.1453 2.2287 41 1 6.9088 -7.4384 1.6983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679117827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:23 Heat of formation + Delta-G solvation = 36.518523 kcal Electronic energy + Delta-G solvation = -25041.745563 eV Core-core repulsion = 21085.631867 eV Total energy + Delta-G solvation = -3956.113696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.06078 -40.68681 -39.32212 -38.45650 -34.78225 -33.99879 -33.56383 -32.43581 -31.88970 -29.99374 -27.46540 -26.12433 -25.62625 -25.28875 -23.57621 -22.68444 -21.26216 -20.52411 -19.68450 -19.37389 -18.05324 -17.79604 -16.95227 -16.55585 -16.38428 -16.08139 -15.54962 -15.40866 -15.16098 -14.96859 -14.90892 -14.29775 -14.04818 -13.85020 -13.40480 -13.00637 -12.85723 -12.82278 -12.78963 -12.44782 -11.84421 -11.35673 -11.31734 -11.26632 -11.10310 -11.05106 -11.00489 -10.67938 -10.65216 -10.55525 -10.35915 -9.85052 -9.53991 -9.48093 -9.01174 -8.93354 -8.49453 -6.91256 -6.28679 -4.00268 0.75321 1.54901 1.97392 2.39226 2.77723 2.86250 2.99475 3.31263 3.34658 3.51191 3.65369 3.66185 3.87229 4.05445 4.20956 4.27991 4.33704 4.43837 4.45534 4.75272 4.95818 5.10448 5.17488 5.30187 5.31956 5.35874 5.39818 5.40888 5.55979 5.62153 5.69737 5.73660 5.80284 5.86087 6.02132 6.05514 6.16029 6.55641 6.88544 7.37718 7.62653 7.68764 7.94392 8.41811 8.50937 9.17590 10.80537 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.001679 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.770892 B =16669.672312 C =17503.326782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.132 3.868 15 C -0.125 4.125 16 H 0.096 0.904 17 C -0.133 4.133 18 C 0.119 3.881 19 H 0.109 0.891 20 N -0.696 5.696 21 C 0.617 3.383 22 O -0.505 6.505 23 C 0.150 3.850 24 N -0.461 5.461 25 C 0.199 3.801 26 N -0.397 5.397 27 H 0.453 0.547 28 N -0.275 5.275 29 C -0.145 4.145 30 H 0.271 0.729 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.408 0.592 39 H 0.233 0.767 40 H 0.098 0.902 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.927 -29.248 -3.960 34.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.395 6.395 13 N -0.390 5.390 14 C 0.008 3.992 15 C -0.144 4.144 16 H 0.115 0.885 17 C -0.172 4.172 18 C 0.014 3.986 19 H 0.127 0.873 20 N -0.348 5.348 21 C 0.399 3.601 22 O -0.375 6.375 23 C -0.130 4.130 24 N -0.186 5.186 25 C -0.099 4.099 26 N -0.120 5.120 27 H 0.300 0.700 28 N -0.117 5.117 29 C -0.184 4.184 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.244 0.756 39 H 0.249 0.751 40 H 0.117 0.883 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.533 -27.011 -3.070 33.475 hybrid contribution -1.798 -1.427 -1.092 2.542 sum 17.734 -28.438 -4.162 33.772 Atomic orbital electron populations 1.69939 1.05919 1.27755 1.48096 1.24717 0.94456 0.98978 0.93180 0.86729 0.81897 0.83250 0.79933 1.19224 1.19943 1.15912 1.22323 0.88309 0.97527 1.58756 0.89410 1.84786 1.09235 1.00147 1.97422 1.23278 0.94147 1.04320 1.05751 1.20273 0.90550 0.82361 0.75278 1.90698 1.58791 1.42250 1.47799 1.45954 1.07518 1.07946 1.77588 1.21283 0.81568 0.93937 1.02454 1.22891 0.97523 0.95607 0.98347 0.88535 1.23305 0.96334 0.97782 0.99779 1.21923 0.98352 0.81557 0.96761 0.87284 1.45388 1.62154 1.04827 1.22430 1.16255 0.78760 0.80814 0.84299 1.90859 1.41485 1.86027 1.19160 1.23826 1.03701 0.95098 0.90413 1.71336 1.20060 0.98432 1.28726 1.26808 0.97411 1.01423 0.84236 1.45148 1.43826 1.03933 1.19075 0.69968 1.74247 1.18327 0.99899 1.19239 1.23548 0.99053 0.98953 0.96844 0.91953 0.88500 0.88572 0.76735 0.91444 0.91283 0.90347 0.87852 0.75591 0.75115 0.88348 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.74 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 11 C 0.53 9.26 7.85 -10.99 -0.09 9.18 16 12 O -0.52 -11.17 15.86 5.56 0.09 -11.09 16 13 N -0.74 -8.89 5.56 -60.30 -0.33 -9.23 16 14 C 0.13 1.32 5.51 -4.04 -0.02 1.30 16 15 C -0.12 -0.83 3.63 -89.81 -0.33 -1.16 16 16 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 17 C -0.13 -0.75 7.39 -25.92 -0.19 -0.94 16 18 C 0.12 0.84 4.32 -67.12 -0.29 0.55 16 19 H 0.11 0.90 7.47 -51.92 -0.39 0.51 16 20 N -0.70 -5.14 5.26 -53.95 -0.28 -5.42 16 21 C 0.62 6.47 7.83 -12.32 -0.10 6.38 16 22 O -0.50 -7.11 16.69 5.32 0.09 -7.03 16 23 C 0.15 1.41 7.96 -156.36 -1.24 0.17 16 24 N -0.46 -4.24 11.41 -12.36 -0.14 -4.39 16 25 C 0.20 0.73 13.14 -90.47 -1.19 -0.46 16 26 N -0.40 -1.14 6.93 29.57 0.20 -0.94 16 27 H 0.45 -0.65 8.96 -190.21 -1.70 -2.36 16 28 N -0.28 -1.82 11.98 32.07 0.38 -1.44 16 29 C -0.15 -1.05 7.43 -25.92 -0.19 -1.24 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 32 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.41 2.30 8.40 -40.82 -0.34 1.96 16 39 H 0.23 -0.36 8.06 -52.49 -0.42 -0.79 16 40 H 0.10 0.73 7.89 -51.93 -0.41 0.32 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -40.68 372.05 -10.08 -50.75 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.56 Total: -2.10 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -3.20 Total: -0.44 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.60 Total: -47.23 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.18 Total: -18.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.68 -10.08 -50.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679117827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.273 kcal (2) G-P(sol) polarization free energy of solvation -40.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds