Wall clock time and date at job start Tue Mar 31 2020 22:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48491 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47042 * 300.00582 * 3 2 1 6 6 H 1.48504 * 109.46790 * 60.00619 * 3 2 1 7 7 C 1.38797 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 H 1.08998 * 112.85495 * 25.32884 * 14 13 11 16 16 C 1.53787 * 113.61479 * 156.52932 * 14 13 11 17 17 C 1.53781 * 87.08088 * 139.98046 * 16 14 13 18 18 H 1.08990 * 113.61809 * 89.12021 * 17 16 14 19 19 C 1.53005 * 113.61024 * 219.93910 * 17 16 14 20 20 N 1.46501 * 109.47011 * 184.99781 * 19 17 16 21 21 C 1.34777 * 119.99931 * 179.97438 * 20 19 17 22 22 O 1.21611 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.47232 * 119.99759 * 179.97438 * 21 20 19 24 24 C 1.37003 * 127.18906 * 180.02562 * 23 21 20 25 25 N 1.33323 * 106.37802 * 180.02562 * 24 23 21 26 26 N 1.28515 * 109.43236 * 0.02562 * 25 24 23 27 27 N 1.28710 * 110.64214 * 359.71388 * 26 25 24 28 28 H 0.97007 * 126.04145 * 180.29468 * 27 26 25 29 29 C 1.53782 * 113.61314 * 254.13138 * 14 13 11 30 30 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 32 32 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 33 33 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 34 34 H 1.09000 * 113.61047 * 254.52942 * 16 14 13 35 35 H 1.09001 * 113.60931 * 25.34399 * 16 14 13 36 36 H 1.09005 * 109.47025 * 304.99168 * 19 17 16 37 37 H 1.08994 * 109.47548 * 64.99720 * 19 17 16 38 38 H 0.97000 * 119.99809 * 359.97438 * 20 19 17 39 39 H 1.08005 * 126.81712 * 359.97438 * 24 23 21 40 40 H 1.08995 * 113.61798 * 334.57738 * 29 14 13 41 41 H 1.09009 * 113.61104 * 105.47341 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 0.0063 15 1 1.3299 -7.7944 -0.4187 16 6 3.3224 -8.7470 -0.5559 17 6 2.8623 -9.6865 0.5713 18 1 2.0070 -10.3058 0.3017 19 6 4.0014 -10.4892 1.2031 20 7 3.4506 -11.4352 2.1768 21 6 4.2740 -12.2537 2.8613 22 8 5.4742 -12.2067 2.6711 23 6 3.7205 -13.2040 3.8402 24 6 4.4160 -14.0968 4.6122 25 7 3.5104 -14.7461 5.3443 26 7 2.3367 -14.3049 5.0624 27 7 2.4023 -13.3772 4.1727 28 1 1.6512 -12.8882 3.8014 29 6 2.4812 -8.4226 1.3633 30 1 -0.4850 0.8401 0.0004 31 1 3.1245 -3.7313 0.8894 32 1 3.1244 -3.7313 -0.8906 33 1 3.8010 -6.1834 -0.0006 34 1 3.0640 -9.1024 -1.5534 35 1 4.3651 -8.4406 -0.4726 36 1 4.5346 -11.0369 0.4260 37 1 4.6895 -9.8097 1.7060 38 1 2.4933 -11.4724 2.3288 39 1 5.4856 -14.2459 4.6248 40 1 3.2935 -8.0281 1.9737 41 1 1.5446 -8.5167 1.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684254455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:43 Heat of formation + Delta-G solvation = 39.031840 kcal Electronic energy + Delta-G solvation = -24895.744084 eV Core-core repulsion = 20939.739373 eV Total energy + Delta-G solvation = -3956.004710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.94927 -40.57798 -39.79209 -38.29586 -35.47781 -34.12464 -33.25044 -32.47136 -32.03764 -29.61518 -28.11498 -26.14453 -25.54691 -24.88888 -23.58369 -22.70223 -21.66941 -20.51270 -20.44700 -19.48274 -17.86471 -17.46754 -17.01322 -16.86841 -16.48473 -16.08473 -15.91118 -15.42666 -14.97722 -14.89417 -14.84476 -14.69539 -14.10827 -13.89504 -13.32630 -12.92273 -12.83203 -12.79623 -12.60379 -12.48159 -11.96917 -11.88440 -11.65351 -11.37552 -11.20230 -11.10401 -11.06346 -10.86522 -10.80796 -10.73952 -10.18965 -9.84845 -9.79419 -9.46954 -9.12103 -8.96709 -8.28829 -6.55152 -6.26223 -3.97064 0.25416 1.70406 1.78779 2.25949 2.43568 2.97168 2.97745 3.18430 3.25130 3.29507 3.64109 3.67595 3.96149 4.00601 4.14635 4.16186 4.27206 4.37240 4.50334 4.54646 4.66051 4.94680 5.08812 5.09380 5.13407 5.30179 5.33760 5.38044 5.39033 5.52325 5.61634 5.62654 5.69732 5.82619 5.92444 6.00767 6.08181 6.55889 6.60193 7.31158 7.55662 7.61788 7.64970 8.31082 8.52052 9.19494 10.81264 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.001536 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.385197 B =18229.953813 C =18405.746202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.729 5.729 14 C 0.128 3.872 15 H 0.115 0.885 16 C -0.134 4.134 17 C -0.126 4.126 18 H 0.101 0.899 19 C 0.132 3.868 20 N -0.722 5.722 21 C 0.595 3.405 22 O -0.511 6.511 23 C -0.069 4.069 24 C 0.036 3.964 25 N -0.269 5.269 26 N -0.043 5.043 27 N -0.374 5.374 28 H 0.451 0.549 29 C -0.150 4.150 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.397 0.603 39 H 0.206 0.794 40 H 0.088 0.912 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -26.594 3.134 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.382 5.382 14 C 0.022 3.978 15 H 0.133 0.867 16 C -0.173 4.173 17 C -0.145 4.145 18 H 0.119 0.881 19 C 0.009 3.991 20 N -0.374 5.374 21 C 0.379 3.621 22 O -0.384 6.384 23 C -0.203 4.203 24 C -0.124 4.124 25 N -0.134 5.134 26 N -0.025 5.025 27 N -0.102 5.102 28 H 0.298 0.702 29 C -0.189 4.189 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.222 0.778 40 H 0.107 0.893 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.343 -27.633 3.913 28.621 hybrid contribution 2.085 2.315 -0.824 3.223 sum 8.428 -25.318 3.089 26.862 Atomic orbital electron populations 1.70024 1.05963 1.27389 1.46899 1.24995 0.95029 0.99058 0.94485 0.86113 0.79586 0.81844 0.77934 1.19610 1.20537 1.20544 1.22907 0.94950 0.91616 1.58933 0.90854 1.85388 1.04924 0.96410 1.96726 1.23544 1.06626 0.95420 1.04957 1.20367 0.86581 0.86399 0.74680 1.90695 1.15415 1.85608 1.47469 1.45988 1.09799 1.05065 1.77369 1.22329 0.99160 0.80320 0.96004 0.86693 1.23320 1.00301 0.95314 0.98375 1.22680 0.98352 0.95472 0.97972 0.88106 1.21505 0.95877 0.90834 0.90868 1.45894 1.10163 1.38924 1.42378 1.16733 0.86334 0.79487 0.79594 1.90900 1.13754 1.68545 1.65201 1.22388 0.84727 1.06503 1.06729 1.23977 1.01900 0.93176 0.93323 1.75053 0.94731 1.22284 1.21308 1.78273 1.18853 1.01102 1.04259 1.45630 1.08424 1.27370 1.28730 0.70192 1.23661 1.02664 0.94832 0.97727 0.92208 0.89215 0.89170 0.76663 0.90165 0.89047 0.90483 0.90400 0.76903 0.77751 0.89337 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.21 7.85 -10.98 -0.09 9.13 16 12 O -0.52 -11.05 15.48 5.56 0.09 -10.96 16 13 N -0.73 -8.37 5.36 -53.02 -0.28 -8.66 16 14 C 0.13 1.16 4.21 -67.12 -0.28 0.87 16 15 H 0.12 1.27 7.50 -51.93 -0.39 0.88 16 16 C -0.13 -0.74 7.39 -25.92 -0.19 -0.93 16 17 C -0.13 -0.54 3.75 -89.72 -0.34 -0.88 16 18 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 19 C 0.13 0.62 5.52 -4.04 -0.02 0.59 16 20 N -0.72 -2.92 5.55 -61.44 -0.34 -3.26 16 21 C 0.60 3.97 7.81 -12.61 -0.10 3.87 16 22 O -0.51 -5.25 16.92 5.27 0.09 -5.16 16 23 C -0.07 -0.42 7.17 -82.33 -0.59 -1.01 16 24 C 0.04 0.26 11.87 -17.35 -0.21 0.05 16 25 N -0.27 -2.42 12.35 30.47 0.38 -2.04 16 26 N -0.04 -0.33 13.35 60.35 0.81 0.47 16 27 N -0.37 -1.67 6.97 33.31 0.23 -1.44 16 28 H 0.45 0.20 8.32 -190.33 -1.58 -1.38 16 29 C -0.15 -1.03 7.45 -25.83 -0.19 -1.22 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 32 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 33 H 0.40 3.47 8.71 -40.82 -0.36 3.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 38 H 0.40 0.51 7.74 -40.82 -0.32 0.19 16 39 H 0.21 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.09 0.63 7.91 -51.93 -0.41 0.22 16 41 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -38.23 373.94 -7.87 -46.10 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.39 Total: -2.86 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.59 Total: -5.01 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.52 Total: -39.99 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: 0.18 Total: -16.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.23 -7.87 -46.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684254455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.134 kcal (2) G-P(sol) polarization free energy of solvation -38.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds