Wall clock time and date at job start Tue Mar 31 2020 22:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86808 * 119.99980 * 2 1 4 4 H 1.48491 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47042 * 300.00582 * 3 2 1 6 6 H 1.48504 * 109.46790 * 60.00619 * 3 2 1 7 7 C 1.38797 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47244 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00363 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99864 * 179.72721 * 13 11 10 15 15 H 1.08998 * 112.85495 * 25.32884 * 14 13 11 16 16 C 1.53787 * 113.61479 * 156.52932 * 14 13 11 17 17 C 1.53781 * 87.08088 * 139.98046 * 16 14 13 18 18 H 1.08990 * 113.61809 * 89.12021 * 17 16 14 19 19 C 1.53005 * 113.61024 * 219.93910 * 17 16 14 20 20 N 1.46501 * 109.47011 * 184.99781 * 19 17 16 21 21 C 1.34777 * 119.99931 * 179.97438 * 20 19 17 22 22 O 1.21611 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.47232 * 119.99759 * 179.97438 * 21 20 19 24 24 C 1.37003 * 127.18906 * 180.02562 * 23 21 20 25 25 N 1.33323 * 106.37802 * 180.02562 * 24 23 21 26 26 N 1.28515 * 109.43236 * 0.02562 * 25 24 23 27 27 N 1.28710 * 110.64214 * 359.71388 * 26 25 24 28 28 H 0.97007 * 126.04145 * 180.29468 * 27 26 25 29 29 C 1.53782 * 113.61314 * 254.13138 * 14 13 11 30 30 H 0.97000 * 119.99868 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46868 * 59.99725 * 10 9 7 32 32 H 1.09002 * 109.46818 * 299.99575 * 10 9 7 33 33 H 0.97000 * 119.99339 * 0.02562 * 13 11 10 34 34 H 1.09000 * 113.61047 * 254.52942 * 16 14 13 35 35 H 1.09001 * 113.60931 * 25.34399 * 16 14 13 36 36 H 1.09005 * 109.47025 * 304.99168 * 19 17 16 37 37 H 1.08994 * 109.47548 * 64.99720 * 19 17 16 38 38 H 0.97000 * 119.99809 * 359.97438 * 20 19 17 39 39 H 1.08005 * 126.81712 * 359.97438 * 24 23 21 40 40 H 1.08995 * 113.61798 * 334.57738 * 29 14 13 41 41 H 1.09009 * 113.61104 * 105.47341 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7150 0.0063 15 1 1.3299 -7.7944 -0.4187 16 6 3.3224 -8.7470 -0.5559 17 6 2.8623 -9.6865 0.5713 18 1 2.0070 -10.3058 0.3017 19 6 4.0014 -10.4892 1.2031 20 7 3.4506 -11.4352 2.1768 21 6 4.2740 -12.2537 2.8613 22 8 5.4742 -12.2067 2.6711 23 6 3.7205 -13.2040 3.8402 24 6 4.4160 -14.0968 4.6122 25 7 3.5104 -14.7461 5.3443 26 7 2.3367 -14.3049 5.0624 27 7 2.4023 -13.3772 4.1727 28 1 1.6512 -12.8882 3.8014 29 6 2.4812 -8.4226 1.3633 30 1 -0.4850 0.8401 0.0004 31 1 3.1245 -3.7313 0.8894 32 1 3.1244 -3.7313 -0.8906 33 1 3.8010 -6.1834 -0.0006 34 1 3.0640 -9.1024 -1.5534 35 1 4.3651 -8.4406 -0.4726 36 1 4.5346 -11.0369 0.4260 37 1 4.6895 -9.8097 1.7060 38 1 2.4933 -11.4724 2.3288 39 1 5.4856 -14.2459 4.6248 40 1 3.2935 -8.0281 1.9737 41 1 1.5446 -8.5167 1.9131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684254455.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:42 Heat of formation + Delta-G solvation = 7.518799 kcal Electronic energy + Delta-G solvation = -24897.110592 eV Core-core repulsion = 20939.739373 eV Total energy + Delta-G solvation = -3957.371218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.46012 -41.27031 -40.58581 -39.30325 -36.07306 -34.76057 -34.59065 -34.19442 -32.58041 -30.89830 -28.84518 -27.66476 -26.66392 -25.45117 -24.16329 -23.35950 -22.15782 -21.67520 -21.02500 -20.09802 -19.69042 -18.06492 -17.77679 -17.51545 -17.42370 -17.00289 -16.88396 -16.45324 -16.43072 -15.99085 -15.79568 -15.37817 -15.23164 -14.71045 -14.55130 -14.50913 -13.70551 -13.40054 -13.35424 -13.27485 -13.16507 -12.95299 -12.89279 -12.63806 -12.43319 -12.26130 -11.88417 -11.77032 -11.71473 -11.39308 -11.36402 -11.16512 -10.87184 -10.73202 -10.27587 -10.23184 -9.98104 -8.66883 -8.35675 -6.13349 -0.24130 1.14855 1.27714 1.39017 1.40849 1.47670 1.58499 1.61624 1.85065 1.92420 2.26120 2.36093 2.98783 3.23747 3.32059 3.48334 3.49313 3.67397 3.78838 3.87676 3.89621 4.00775 4.05650 4.25541 4.31606 4.47326 4.51856 4.71078 4.80967 4.86124 4.89451 4.91003 5.02746 5.12928 5.18010 5.37165 5.41659 5.62677 5.65369 6.19315 6.22593 6.55065 6.86853 7.06159 7.12340 7.28167 8.73718 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.001536 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.385197 B =18229.953813 C =18405.746202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.152 6.152 10 C -0.132 4.132 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.703 5.703 14 C 0.106 3.894 15 H 0.093 0.907 16 C -0.121 4.121 17 C -0.103 4.103 18 H 0.119 0.881 19 C 0.134 3.866 20 N -0.707 5.707 21 C 0.601 3.399 22 O -0.549 6.549 23 C -0.063 4.063 24 C 0.026 3.974 25 N -0.299 5.299 26 N -0.061 5.061 27 N -0.349 5.349 28 H 0.468 0.532 29 C -0.147 4.147 30 H 0.271 0.729 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.416 0.584 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.218 0.782 40 H 0.090 0.910 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -27.117 2.746 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.283 4.283 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.356 5.356 14 C 0.002 3.998 15 H 0.111 0.889 16 C -0.159 4.159 17 C -0.122 4.122 18 H 0.137 0.863 19 C 0.011 3.989 20 N -0.358 5.358 21 C 0.384 3.616 22 O -0.425 6.425 23 C -0.198 4.198 24 C -0.135 4.135 25 N -0.164 5.164 26 N -0.043 5.043 27 N -0.080 5.080 28 H 0.319 0.681 29 C -0.186 4.186 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.234 0.766 40 H 0.108 0.892 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.272 -28.193 3.522 29.592 hybrid contribution 1.503 2.383 -0.732 2.910 sum 9.775 -25.810 2.790 27.740 Atomic orbital electron populations 1.70184 1.07953 1.28538 1.48082 1.26111 0.95950 1.03282 0.93746 0.84917 0.78625 0.76407 0.78072 1.18050 1.19938 1.19975 1.23245 0.95354 0.92086 1.58755 0.89945 1.85547 1.10670 0.99245 1.97044 1.23401 1.03499 0.94736 1.06687 1.20056 0.86351 0.86733 0.74819 1.90682 1.17460 1.86092 1.50303 1.45780 1.10007 1.04908 1.74881 1.22654 0.99411 0.79284 0.98496 0.88907 1.23295 0.99976 0.93552 0.99114 1.22541 0.98692 0.94501 0.96431 0.86286 1.21471 0.95771 0.90731 0.90895 1.45776 1.10840 1.37826 1.41400 1.16704 0.85905 0.79496 0.79485 1.90889 1.15358 1.69747 1.66468 1.22265 0.85050 1.06130 1.06399 1.24301 1.02573 0.93282 0.93294 1.75030 0.95336 1.23469 1.22516 1.78208 1.18701 1.02099 1.05279 1.45586 1.08641 1.26296 1.27440 0.68082 1.23637 1.02607 0.95743 0.96619 0.91998 0.87376 0.87298 0.74657 0.89247 0.87621 0.90124 0.90979 0.75090 0.76571 0.89170 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.31 13.22 21.65 0.29 -55.03 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.01 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -30.75 9.50 67.95 0.65 -30.10 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 10 C -0.13 -4.98 6.16 71.23 0.44 -4.54 16 11 C 0.53 18.21 7.85 87.65 0.69 18.90 16 12 O -0.57 -24.76 15.48 -3.04 -0.05 -24.81 16 13 N -0.70 -14.86 5.36 -440.04 -2.36 -17.22 16 14 C 0.11 1.73 4.21 45.52 0.19 1.93 16 15 H 0.09 2.00 7.50 -2.39 -0.02 1.98 16 16 C -0.12 -0.94 7.39 31.12 0.23 -0.71 16 17 C -0.10 -0.55 3.75 -10.21 -0.04 -0.59 16 18 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 19 C 0.13 0.83 5.52 86.38 0.48 1.31 16 20 N -0.71 -3.72 5.55 -466.56 -2.59 -6.31 16 21 C 0.60 6.85 7.81 86.61 0.68 7.53 16 22 O -0.55 -10.52 16.92 -4.06 -0.07 -10.59 16 23 C -0.06 -0.67 7.17 40.40 0.29 -0.38 16 24 C 0.03 0.35 11.87 84.18 1.00 1.35 16 25 N -0.30 -5.28 12.35 -57.50 -0.71 -5.99 16 26 N -0.06 -0.90 13.35 37.02 0.49 -0.40 16 27 N -0.35 -2.53 6.97 -48.52 -0.34 -2.86 16 28 H 0.47 -0.68 8.32 -219.89 -1.83 -2.51 16 29 C -0.15 -1.68 7.45 31.18 0.23 -1.45 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.42 6.01 8.71 -92.71 -0.81 5.20 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 0.59 8.07 -2.39 -0.02 0.57 16 36 H 0.08 0.54 8.14 -2.38 -0.02 0.53 16 37 H 0.07 0.61 7.86 -2.39 -0.02 0.59 16 38 H 0.41 -0.32 7.74 -92.71 -0.72 -1.03 16 39 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.09 1.04 7.91 -2.39 -0.02 1.03 16 41 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -86.60 373.94 -1.41 -88.02 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.24 Total: 5.10 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.29 Total: -5.50 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -5.22 Total: -87.81 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.12 Total: -35.39 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -86.60 -1.41 -88.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684254455.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.538 kcal (2) G-P(sol) polarization free energy of solvation -86.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds