Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48498 * 109.47219 * 269.99680 * 3 2 1 5 5 H 1.48504 * 109.47447 * 29.99716 * 3 2 1 6 6 H 1.48506 * 109.47281 * 149.99848 * 3 2 1 7 7 C 1.38800 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99769 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.80990 * 99.99989 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99742 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46859 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47109 * 180.02562 * 15 14 13 17 17 N 1.46491 * 109.47316 * 179.97438 * 16 15 14 18 18 C 1.34780 * 120.00563 * 179.97438 * 17 16 15 19 19 O 1.21567 * 119.99489 * 359.97438 * 18 17 16 20 20 C 1.47726 * 120.00512 * 179.97438 * 18 17 16 21 21 N 1.33018 * 120.15940 * 5.55199 * 20 18 17 22 22 C 1.31731 * 120.01058 * 180.02562 * 21 20 18 23 23 C 1.38806 * 120.33714 * 0.02562 * 22 21 20 24 24 N 1.32023 * 120.33227 * 0.02562 * 23 22 21 25 25 C 1.32835 * 119.98015 * 359.97438 * 24 23 22 26 26 N 1.38269 * 120.16637 * 179.97438 * 25 24 23 27 27 H 0.97002 * 120.00343 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47360 * 60.00463 * 10 9 7 29 29 H 1.09001 * 109.47781 * 299.99812 * 10 9 7 30 30 H 0.96995 * 120.00298 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47387 * 60.00017 * 14 13 11 32 32 H 1.08999 * 109.47451 * 300.00010 * 14 13 11 33 33 H 1.08989 * 109.47322 * 60.00252 * 15 14 13 34 34 H 1.08999 * 109.46776 * 300.00031 * 15 14 13 35 35 H 1.09005 * 109.47293 * 59.99704 * 16 15 14 36 36 H 1.09004 * 109.47069 * 300.00048 * 16 15 14 37 37 H 0.97006 * 119.99977 * 359.97438 * 17 16 15 38 38 H 1.07996 * 119.83269 * 180.27881 * 22 21 20 39 39 H 1.07996 * 119.83302 * 179.97438 * 23 22 21 40 40 H 0.97002 * 120.00242 * 354.61541 * 26 25 24 41 41 H 0.97005 * 119.99543 * 174.61076 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7150 0.0019 15 6 3.5027 -8.6985 0.0018 16 6 2.9662 -10.1313 0.0024 17 7 4.0884 -11.0730 0.0017 18 6 3.8545 -12.4003 0.0025 19 8 2.7121 -12.8161 0.0044 20 6 4.9861 -13.3499 0.0012 21 7 6.2340 -12.9025 0.1105 22 6 7.2410 -13.7518 0.1085 23 6 7.0080 -15.1152 -0.0078 24 7 5.7749 -15.5739 -0.1180 25 6 4.7499 -14.7289 -0.1174 26 7 3.4569 -15.2050 -0.2332 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1835 0.0004 31 1 1.7210 -7.8755 -0.8873 32 1 1.7229 -7.8747 0.8926 33 1 4.1118 -8.5379 0.8912 34 1 4.1107 -8.5389 -0.8887 35 1 2.3572 -10.2917 -0.8873 36 1 2.3579 -10.2912 0.8927 37 1 4.9999 -10.7412 0.0006 38 1 8.2527 -13.3858 0.2018 39 1 7.8396 -15.8042 -0.0090 40 1 3.3000 -16.1488 -0.3933 41 1 2.7067 -14.5952 -0.1541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686894487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = -24.955515 kcal Electronic energy + Delta-G solvation = -24544.233930 eV Core-core repulsion = 20585.454520 eV Total energy + Delta-G solvation = -3958.779410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77828 -39.82051 -39.17731 -36.71029 -35.85901 -34.48102 -34.21022 -32.43346 -31.78762 -30.31267 -29.08902 -26.51010 -25.53099 -24.97978 -24.00759 -22.14412 -21.50276 -20.37495 -18.99615 -18.33236 -18.08917 -17.80095 -16.74911 -16.49175 -16.27539 -16.05429 -15.83657 -15.48178 -15.39692 -15.03241 -14.80790 -14.50494 -14.37250 -13.95884 -13.79517 -13.14936 -13.11393 -12.69150 -12.37205 -12.33794 -12.18217 -11.99109 -11.94837 -11.35543 -11.14285 -11.06660 -11.02934 -10.82086 -10.76117 -9.82417 -9.71956 -9.62451 -9.43392 -9.07628 -8.92775 -8.61208 -8.24206 -6.50624 -6.22043 -3.92786 -0.00667 0.73660 2.22137 2.45633 2.91929 3.05835 3.07976 3.22079 3.27848 3.31755 3.32020 3.56039 3.70360 3.77751 4.03543 4.19995 4.50262 4.57583 4.58666 4.63463 4.71295 4.75679 5.13131 5.16065 5.19430 5.26992 5.46094 5.60564 5.67027 5.75644 5.83325 5.88829 5.90020 6.12693 6.43800 6.56331 6.69222 6.85405 7.03472 7.45458 7.59026 7.66817 7.70947 8.34697 8.58858 9.23237 10.85381 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.001390 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.007194 B =20135.219438 C =20891.165450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.125 3.875 15 C -0.144 4.144 16 C 0.119 3.881 17 N -0.705 5.705 18 C 0.589 3.411 19 O -0.544 6.544 20 C -0.057 4.057 21 N -0.371 5.371 22 C -0.025 4.025 23 C 0.142 3.858 24 N -0.511 5.511 25 C 0.414 3.586 26 N -0.814 5.814 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.402 0.598 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.859 -31.354 -0.221 35.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.395 5.395 14 C 0.000 4.000 15 C -0.182 4.182 16 C -0.004 4.004 17 N -0.355 5.355 18 C 0.375 3.625 19 O -0.422 6.422 20 C -0.206 4.206 21 N -0.088 5.088 22 C -0.191 4.191 23 C -0.024 4.024 24 N -0.235 5.235 25 C 0.170 3.830 26 N -0.366 5.366 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.232 0.768 41 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 13.653 -31.754 -0.214 34.565 hybrid contribution 2.783 1.236 -0.025 3.045 sum 16.436 -30.518 -0.239 34.663 Atomic orbital electron populations 1.70018 1.05959 1.27468 1.46820 1.24991 0.95022 0.99028 0.94518 0.86166 0.79401 0.81564 0.78344 1.20274 1.20744 1.19705 1.22870 0.94914 0.91661 1.59006 0.90915 1.85412 1.04918 0.96337 1.96720 1.23530 1.06591 0.95340 1.04945 1.20323 0.86520 0.86295 0.75128 1.90712 1.15372 1.85602 1.47353 1.45958 1.09979 1.05367 1.78169 1.21094 0.95349 0.80603 1.02962 1.21979 0.99062 0.93309 1.03822 1.21356 0.88610 0.86935 1.03543 1.45696 1.11268 1.05089 1.73420 1.17476 0.86817 0.82267 0.75934 1.90432 1.22148 1.77121 1.52544 1.21127 0.92889 0.91382 1.15193 1.68033 0.98249 1.38738 1.03791 1.23414 0.99062 0.90881 1.05771 1.23870 0.93852 0.95703 0.88975 1.68225 0.99317 1.36822 1.19130 1.19135 0.87780 0.88617 0.87484 1.43347 1.04207 1.14161 1.74853 0.92171 0.89193 0.89193 0.76780 0.91205 0.91208 0.90276 0.90313 0.90456 0.90441 0.75080 0.80829 0.80673 0.76832 0.72546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.69 7.85 -10.98 -0.09 9.60 16 12 O -0.52 -11.64 15.86 5.55 0.09 -11.55 16 13 N -0.74 -9.17 5.56 -60.29 -0.33 -9.50 16 14 C 0.12 1.29 5.67 -4.04 -0.02 1.27 16 15 C -0.14 -0.94 5.44 -26.73 -0.15 -1.08 16 16 C 0.12 0.88 5.67 -4.05 -0.02 0.86 16 17 N -0.70 -5.28 5.54 -61.29 -0.34 -5.62 16 18 C 0.59 5.59 7.79 -12.38 -0.10 5.49 16 19 O -0.54 -6.07 13.65 5.31 0.07 -6.00 16 20 C -0.06 -0.51 6.77 -82.66 -0.56 -1.07 16 21 N -0.37 -2.78 9.71 -9.49 -0.09 -2.87 16 22 C -0.03 -0.12 11.21 -17.38 -0.19 -0.32 16 23 C 0.14 0.68 11.22 -17.26 -0.19 0.48 16 24 N -0.51 -3.91 10.52 -12.00 -0.13 -4.04 16 25 C 0.41 3.56 7.77 -154.87 -1.20 2.36 16 26 N -0.81 -5.95 8.93 31.32 0.28 -5.67 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.40 3.66 8.47 -40.82 -0.35 3.32 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.45 8.14 -51.94 -0.42 0.03 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 2.52 7.83 -40.82 -0.32 2.20 16 38 H 0.17 0.28 8.06 -52.49 -0.42 -0.15 16 39 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 40 H 0.40 2.10 8.95 -40.82 -0.37 1.73 16 41 H 0.43 3.52 5.32 -40.96 -0.22 3.31 16 LS Contribution 372.94 15.07 5.62 5.62 Total: -1.00 -37.47 372.94 -8.46 -45.93 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.02 Total: 4.79 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.11 Total: 1.85 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.12 Total: -53.08 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.16 Total: -17.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.47 -8.46 -45.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.976 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds