Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48498 * 109.47219 * 269.99680 * 3 2 1 5 5 H 1.48504 * 109.47447 * 29.99716 * 3 2 1 6 6 H 1.48506 * 109.47281 * 149.99848 * 3 2 1 7 7 C 1.38800 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99769 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.80990 * 99.99989 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47235 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99742 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46859 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47109 * 180.02562 * 15 14 13 17 17 N 1.46491 * 109.47316 * 179.97438 * 16 15 14 18 18 C 1.34780 * 120.00563 * 179.97438 * 17 16 15 19 19 O 1.21567 * 119.99489 * 359.97438 * 18 17 16 20 20 C 1.47726 * 120.00512 * 179.97438 * 18 17 16 21 21 N 1.33018 * 120.15940 * 5.55199 * 20 18 17 22 22 C 1.31731 * 120.01058 * 180.02562 * 21 20 18 23 23 C 1.38806 * 120.33714 * 0.02562 * 22 21 20 24 24 N 1.32023 * 120.33227 * 0.02562 * 23 22 21 25 25 C 1.32835 * 119.98015 * 359.97438 * 24 23 22 26 26 N 1.38269 * 120.16637 * 179.97438 * 25 24 23 27 27 H 0.97002 * 120.00343 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47360 * 60.00463 * 10 9 7 29 29 H 1.09001 * 109.47781 * 299.99812 * 10 9 7 30 30 H 0.96995 * 120.00298 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47387 * 60.00017 * 14 13 11 32 32 H 1.08999 * 109.47451 * 300.00010 * 14 13 11 33 33 H 1.08989 * 109.47322 * 60.00252 * 15 14 13 34 34 H 1.08999 * 109.46776 * 300.00031 * 15 14 13 35 35 H 1.09005 * 109.47293 * 59.99704 * 16 15 14 36 36 H 1.09004 * 109.47069 * 300.00048 * 16 15 14 37 37 H 0.97006 * 119.99977 * 359.97438 * 17 16 15 38 38 H 1.07996 * 119.83269 * 180.27881 * 22 21 20 39 39 H 1.07996 * 119.83302 * 179.97438 * 23 22 21 40 40 H 0.97002 * 120.00242 * 354.61541 * 26 25 24 41 41 H 0.97005 * 119.99543 * 174.61076 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3306 -7.7150 0.0019 15 6 3.5027 -8.6985 0.0018 16 6 2.9662 -10.1313 0.0024 17 7 4.0884 -11.0730 0.0017 18 6 3.8545 -12.4003 0.0025 19 8 2.7121 -12.8161 0.0044 20 6 4.9861 -13.3499 0.0012 21 7 6.2340 -12.9025 0.1105 22 6 7.2410 -13.7518 0.1085 23 6 7.0080 -15.1152 -0.0078 24 7 5.7749 -15.5739 -0.1180 25 6 4.7499 -14.7289 -0.1174 26 7 3.4569 -15.2050 -0.2332 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1835 0.0004 31 1 1.7210 -7.8755 -0.8873 32 1 1.7229 -7.8747 0.8926 33 1 4.1118 -8.5379 0.8912 34 1 4.1107 -8.5389 -0.8887 35 1 2.3572 -10.2917 -0.8873 36 1 2.3579 -10.2912 0.8927 37 1 4.9999 -10.7412 0.0006 38 1 8.2527 -13.3858 0.2018 39 1 7.8396 -15.8042 -0.0090 40 1 3.3000 -16.1488 -0.3933 41 1 2.7067 -14.5952 -0.1541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686894487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = -56.659779 kcal Electronic energy + Delta-G solvation = -24545.608730 eV Core-core repulsion = 20585.454520 eV Total energy + Delta-G solvation = -3960.154210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28201 -40.65406 -40.35543 -37.44479 -36.52260 -35.42233 -34.72850 -34.57389 -32.73935 -31.02270 -30.27585 -27.71163 -27.11369 -25.72678 -24.51685 -22.84821 -22.17393 -21.71304 -19.84985 -19.50681 -18.85372 -18.55720 -17.71382 -17.56717 -17.20188 -16.93629 -16.86362 -16.65688 -16.25444 -16.02612 -15.92666 -15.67277 -15.21560 -15.00428 -14.67517 -14.41173 -14.30035 -14.08001 -13.37002 -13.21525 -13.15332 -12.88082 -12.86785 -12.69703 -12.60684 -12.58341 -12.10368 -11.72230 -11.64595 -11.47950 -11.13288 -10.96786 -10.27183 -10.26082 -10.19627 -10.10919 -9.11096 -8.65832 -8.33646 -6.11866 -0.49539 0.27289 1.27907 1.43576 1.48012 1.58097 1.61339 1.62697 1.87178 2.27810 2.33164 2.47388 2.82400 3.00660 3.09105 3.33364 3.36029 3.55473 3.84742 3.95858 3.96867 4.08690 4.15757 4.26653 4.32315 4.49189 4.51630 4.53367 4.57428 4.76232 5.07442 5.08766 5.25599 5.32402 5.42831 5.44164 5.94325 6.19558 6.20825 6.31689 6.51993 6.54132 6.93261 7.07714 7.10970 7.26759 8.75584 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.001390 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.007194 B =20135.219438 C =20891.165450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.122 3.878 15 C -0.124 4.124 16 C 0.122 3.878 17 N -0.695 5.695 18 C 0.581 3.419 19 O -0.571 6.571 20 C -0.086 4.086 21 N -0.383 5.383 22 C -0.018 4.018 23 C 0.149 3.851 24 N -0.529 5.529 25 C 0.396 3.604 26 N -0.815 5.815 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.419 0.581 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.421 0.579 38 H 0.212 0.788 39 H 0.218 0.782 40 H 0.409 0.591 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.074 -31.844 -0.182 38.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.365 5.365 14 C -0.002 4.002 15 C -0.162 4.162 16 C -0.002 4.002 17 N -0.345 5.345 18 C 0.368 3.632 19 O -0.452 6.452 20 C -0.232 4.232 21 N -0.100 5.100 22 C -0.186 4.186 23 C -0.017 4.017 24 N -0.253 5.253 25 C 0.153 3.847 26 N -0.366 5.366 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.256 0.744 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.259 0.741 38 H 0.228 0.772 39 H 0.234 0.766 40 H 0.239 0.761 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 17.917 -32.272 -0.180 36.912 hybrid contribution 1.645 1.186 -0.034 2.028 sum 19.562 -31.086 -0.213 36.729 Atomic orbital electron populations 1.70188 1.08021 1.28592 1.48045 1.26133 0.95944 1.03347 0.93729 0.84945 0.78212 0.75985 0.78779 1.19324 1.20400 1.18102 1.23218 0.95397 0.91966 1.58838 0.89773 1.85613 1.10794 0.99387 1.97064 1.23372 1.03459 0.94235 1.06962 1.20094 0.86234 0.86800 0.75129 1.90703 1.17589 1.86152 1.50194 1.45661 1.10415 1.04924 1.75523 1.21213 0.96896 0.79970 1.02138 1.21801 0.97505 0.91217 1.05631 1.21271 0.88635 0.87484 1.02851 1.45585 1.11607 1.04514 1.72786 1.17738 0.86855 0.82897 0.75675 1.90412 1.23220 1.77644 1.53883 1.20978 0.93290 0.91266 1.17670 1.68033 0.98156 1.39510 1.04265 1.24134 0.99971 0.90886 1.03619 1.24650 0.93845 0.96683 0.86502 1.68302 1.00182 1.37067 1.19735 1.19327 0.88289 0.88973 0.88101 1.43306 1.04000 1.14434 1.74890 0.92026 0.87040 0.87012 0.74359 0.92162 0.92185 0.88455 0.88459 0.91244 0.91294 0.74119 0.77151 0.76554 0.76059 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.55 -31.00 9.50 67.95 0.65 -30.36 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 11 C 0.53 19.00 7.85 87.66 0.69 19.69 16 12 O -0.57 -26.17 15.86 -3.05 -0.05 -26.22 16 13 N -0.71 -16.10 5.56 -463.05 -2.57 -18.67 16 14 C 0.12 2.37 5.67 86.38 0.49 2.86 16 15 C -0.12 -1.32 5.44 30.60 0.17 -1.15 16 16 C 0.12 1.70 5.67 86.38 0.49 2.19 16 17 N -0.69 -9.82 5.54 -466.09 -2.58 -12.41 16 18 C 0.58 11.14 7.79 86.75 0.68 11.81 16 19 O -0.57 -13.36 13.65 -3.93 -0.05 -13.41 16 20 C -0.09 -1.49 6.77 42.00 0.28 -1.21 16 21 N -0.38 -5.05 9.71 -183.95 -1.79 -6.84 16 22 C -0.02 -0.13 11.21 84.84 0.95 0.83 16 23 C 0.15 0.99 11.22 84.80 0.95 1.94 16 24 N -0.53 -7.38 10.52 -191.87 -2.02 -9.40 16 25 C 0.40 6.76 7.77 133.50 1.04 7.80 16 26 N -0.81 -12.51 8.93 -54.83 -0.49 -13.00 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.42 6.18 8.47 -92.71 -0.79 5.40 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 4.41 7.83 -92.70 -0.73 3.68 16 38 H 0.21 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.22 -0.57 8.06 -2.91 -0.02 -0.60 16 40 H 0.41 4.55 8.95 -92.71 -0.83 3.72 16 41 H 0.42 7.51 5.32 -94.92 -0.51 7.01 16 Total: -1.00 -85.68 372.94 -2.84 -88.52 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -1.72 Total: 20.56 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 7.29 Total: 11.10 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -9.17 Total: -116.09 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.10 Total: -39.63 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -85.68 -2.84 -88.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.856 kcal (2) G-P(sol) polarization free energy of solvation -85.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds