Wall clock time and date at job start Tue Mar 31 2020 22:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33318 * 126.81258 * 2 1 4 4 N 1.28512 * 109.44360 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63285 * 359.71762 * 4 3 2 6 6 H 0.97008 * 126.03695 * 180.28904 * 5 4 3 7 7 C 1.37004 * 126.81889 * 180.02562 * 2 1 3 8 8 C 1.47233 * 127.18515 * 359.97438 * 7 2 1 9 9 O 1.21619 * 120.00503 * 0.02562 * 8 7 2 10 10 N 1.34784 * 119.99962 * 180.02562 * 8 7 2 11 11 C 1.46493 * 119.99864 * 179.72816 * 10 8 7 12 12 H 1.09004 * 110.88684 * 325.69672 * 11 10 8 13 13 C 1.55161 * 111.00413 * 201.82157 * 11 10 8 14 14 C 1.54371 * 102.92057 * 206.45387 * 13 11 10 15 15 N 1.47020 * 107.28882 * 22.13370 * 14 13 11 16 16 C 1.34772 * 125.64651 * 181.05640 * 15 14 13 17 17 O 1.21284 * 120.00055 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00436 * 0.04476 * 16 15 14 19 19 S 1.80997 * 109.47416 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99652 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00511 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99833 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00184 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47246 * 90.00126 * 24 22 20 26 26 H 1.48505 * 109.47148 * 210.00515 * 24 22 20 27 27 H 1.48499 * 109.47065 * 330.00162 * 24 22 20 28 28 C 1.47424 * 108.70403 * 1.09516 * 15 14 13 29 29 H 1.08999 * 109.47181 * 269.96956 * 1 2 3 30 30 H 1.08997 * 109.47336 * 29.98152 * 1 2 3 31 31 H 1.09005 * 109.46942 * 149.97316 * 1 2 3 32 32 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 33 33 H 1.09004 * 110.71354 * 324.78172 * 13 11 10 34 34 H 1.08993 * 110.72148 * 88.05279 * 13 11 10 35 35 H 1.08997 * 109.84208 * 262.72423 * 14 13 11 36 36 H 1.09004 * 110.02994 * 141.64611 * 14 13 11 37 37 H 1.09004 * 109.46567 * 300.00397 * 18 16 15 38 38 H 1.08997 * 109.46911 * 59.99339 * 18 16 15 39 39 H 0.97003 * 119.99945 * 179.97438 * 23 22 20 40 40 H 1.08999 * 110.36569 * 217.03397 * 28 15 14 41 41 H 1.09005 * 110.45858 * 94.75620 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5324 0.6837 -0.0005 5 7 3.6057 -0.6013 0.0050 6 1 4.4213 -1.1264 0.0098 7 6 2.3281 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.7423 -2.8065 -0.0007 10 7 2.8587 -3.4816 -0.0006 11 6 2.4550 -4.8898 0.0053 12 1 1.5411 -5.0296 0.5828 13 6 3.5962 -5.7932 0.5429 14 6 3.3094 -7.1508 -0.1337 15 7 2.4954 -6.8806 -1.3278 16 6 2.0195 -7.8094 -2.1806 17 8 1.3561 -7.4706 -3.1378 18 6 2.3110 -9.2690 -1.9447 19 16 1.5418 -10.2569 -3.2517 20 6 2.0294 -11.8715 -2.7417 21 1 2.6283 -11.9991 -1.8522 22 6 1.6445 -12.9795 -3.4839 23 7 2.0082 -14.1857 -3.1027 24 14 0.6090 -12.7589 -5.0229 25 1 1.4999 -12.5906 -6.1990 26 1 -0.2484 -13.9556 -5.2185 27 1 -0.2478 -11.5551 -4.8748 28 6 2.2869 -5.4254 -1.4385 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 3.7998 -3.2467 -0.0001 33 1 4.5691 -5.4083 0.2373 34 1 3.5389 -5.8824 1.6276 35 1 2.7600 -7.7968 0.5511 36 1 4.2453 -7.6287 -0.4234 37 1 3.3890 -9.4302 -1.9544 38 1 1.9077 -9.5682 -0.9773 39 1 1.7389 -14.9600 -3.6212 40 1 1.2836 -5.2129 -1.8075 41 1 3.0343 -4.9823 -2.0968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687140578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:36 Heat of formation + Delta-G solvation = 28.660367 kcal Electronic energy + Delta-G solvation = -25870.702918 eV Core-core repulsion = 21914.248467 eV Total energy + Delta-G solvation = -3956.454451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.94671 -40.65664 -39.53317 -37.53248 -35.20022 -34.24855 -32.97151 -32.47599 -31.27334 -29.92791 -28.74384 -27.80721 -25.66321 -24.96368 -23.80102 -22.85112 -21.54974 -21.29764 -19.76148 -19.44282 -17.87349 -17.28664 -17.16442 -17.02976 -16.72749 -15.84753 -15.55017 -15.10296 -14.88020 -14.77618 -14.39556 -14.27594 -13.90700 -13.72180 -13.50598 -13.26956 -13.16634 -12.93436 -12.78364 -12.41238 -12.25507 -12.14757 -11.96907 -11.71504 -11.37619 -11.29698 -11.12617 -11.03715 -10.75543 -10.66051 -10.02622 -9.89473 -9.78079 -9.60278 -9.03839 -8.74193 -8.54593 -6.96794 -6.32517 -4.04870 0.27405 1.71202 1.80055 2.12583 2.42955 2.66325 2.84380 3.14002 3.30665 3.48285 3.54691 3.66409 3.81646 4.01261 4.11810 4.27566 4.30076 4.41048 4.46836 4.62604 4.71897 4.85672 5.06576 5.09359 5.16604 5.19023 5.26453 5.34610 5.35843 5.45080 5.47719 5.57043 5.70951 5.72864 5.83527 5.93717 5.96480 6.16696 6.60434 7.34031 7.41031 7.69517 7.90367 8.31851 8.37463 9.13600 10.76532 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001939 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.091236 B =14434.340463 C =14939.694444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 N -0.268 5.268 4 N -0.040 5.040 5 N -0.375 5.375 6 H 0.450 0.550 7 C -0.076 4.076 8 C 0.599 3.401 9 O -0.499 6.499 10 N -0.716 5.716 11 C 0.133 3.867 12 H 0.114 0.886 13 C -0.136 4.136 14 C 0.102 3.898 15 N -0.625 5.625 16 C 0.548 3.452 17 O -0.513 6.513 18 C -0.118 4.118 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.098 3.902 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.397 0.603 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.086 0.914 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 26.032 11.732 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 N -0.135 5.135 4 N -0.022 5.022 5 N -0.103 5.103 6 H 0.297 0.703 7 C -0.209 4.209 8 C 0.382 3.618 9 O -0.371 6.371 10 N -0.368 5.368 11 C 0.028 3.972 12 H 0.132 0.868 13 C -0.174 4.174 14 C -0.021 4.021 15 N -0.363 5.363 16 C 0.337 3.663 17 O -0.386 6.386 18 C -0.268 4.268 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.026 4.026 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.805 27.394 10.213 29.629 hybrid contribution 1.214 -1.829 0.514 2.255 sum 6.019 25.565 10.727 28.370 Atomic orbital electron populations 1.20380 0.84549 1.04798 1.04045 1.22418 0.98794 0.86835 0.99165 1.75005 0.95107 1.25904 1.17488 1.78229 1.16115 0.92101 1.15727 1.45465 1.08703 1.07085 1.49043 0.70308 1.22006 0.85117 0.96273 1.17539 1.16714 0.86029 0.82147 0.76867 1.90901 1.16307 1.81681 1.48215 1.45707 1.09096 1.06043 1.75927 1.22224 0.99631 0.78409 0.96971 0.86766 1.22949 0.98263 0.94553 1.01684 1.22005 0.96208 0.96804 0.87113 1.48338 1.54551 1.06037 1.27358 1.20036 0.78346 0.86754 0.81198 1.90727 1.37777 1.81522 1.28608 1.23253 1.05284 0.92857 1.05404 1.84838 1.70083 1.02504 1.34095 1.22291 1.39579 0.89247 1.15799 0.89359 1.24710 0.94961 0.94112 0.97505 1.69935 1.44372 0.97908 1.39361 0.86740 0.81755 0.79983 0.83415 1.19200 1.19885 1.15901 1.22467 1.03278 0.80995 0.95869 0.89685 0.90009 0.88540 0.76846 0.89841 0.88809 0.90451 0.90453 0.88521 0.88394 0.91906 0.89509 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.93 36.01 0.36 -0.21 16 2 C 0.07 0.59 7.29 -82.39 -0.60 -0.01 16 3 N -0.27 -2.67 12.35 33.51 0.41 -2.26 16 4 N -0.04 -0.33 13.35 60.35 0.81 0.47 16 5 N -0.38 -1.86 6.97 33.31 0.23 -1.63 16 6 H 0.45 0.22 8.32 -190.32 -1.58 -1.36 16 7 C -0.08 -0.54 7.17 -82.34 -0.59 -1.13 16 8 C 0.60 4.51 7.81 -12.60 -0.10 4.41 16 9 O -0.50 -5.49 14.68 5.26 0.08 -5.41 16 10 N -0.72 -3.38 5.21 -52.86 -0.28 -3.65 16 11 C 0.13 0.88 3.36 -65.78 -0.22 0.66 16 12 H 0.11 0.93 7.64 -51.93 -0.40 0.53 16 13 C -0.14 -0.60 6.59 -24.87 -0.16 -0.77 16 14 C 0.10 0.81 6.49 -3.04 -0.02 0.79 16 15 N -0.62 -7.74 3.33 -170.49 -0.57 -8.30 16 16 C 0.55 9.66 7.87 -10.99 -0.09 9.57 16 17 O -0.51 -11.13 16.12 5.55 0.09 -11.04 16 18 C -0.12 -2.21 5.35 36.01 0.19 -2.02 16 19 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 20 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.17 13.97 55.49 0.78 -25.40 16 24 Si 0.86 21.58 27.74 -169.99 -4.71 16.87 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 C 0.10 1.02 6.60 -2.53 -0.02 1.00 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.76 6.62 -51.93 -0.34 0.42 16 32 H 0.40 0.48 7.80 -40.82 -0.32 0.16 16 33 H 0.08 0.21 8.00 -51.93 -0.42 -0.20 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 38 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -38.05 365.09 -7.12 -45.18 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -6.43 Total: -5.32 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.03 Total: 0.52 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 1.38 Total: -40.77 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.17 Total: -16.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.05 -7.12 -45.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687140578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.837 kcal (2) G-P(sol) polarization free energy of solvation -38.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds