Wall clock time and date at job start Tue Mar 31 2020 22:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33318 * 126.81258 * 2 1 4 4 N 1.28512 * 109.44360 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63285 * 359.71762 * 4 3 2 6 6 H 0.97008 * 126.03695 * 180.28904 * 5 4 3 7 7 C 1.37004 * 126.81889 * 180.02562 * 2 1 3 8 8 C 1.47233 * 127.18515 * 359.97438 * 7 2 1 9 9 O 1.21619 * 120.00503 * 0.02562 * 8 7 2 10 10 N 1.34784 * 119.99962 * 180.02562 * 8 7 2 11 11 C 1.46493 * 119.99864 * 179.72816 * 10 8 7 12 12 H 1.09004 * 110.88684 * 325.69672 * 11 10 8 13 13 C 1.55161 * 111.00413 * 201.82157 * 11 10 8 14 14 C 1.54371 * 102.92057 * 206.45387 * 13 11 10 15 15 N 1.47020 * 107.28882 * 22.13370 * 14 13 11 16 16 C 1.34772 * 125.64651 * 181.05640 * 15 14 13 17 17 O 1.21284 * 120.00055 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00436 * 0.04476 * 16 15 14 19 19 S 1.80997 * 109.47416 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99652 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00511 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99833 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00184 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47246 * 90.00126 * 24 22 20 26 26 H 1.48505 * 109.47148 * 210.00515 * 24 22 20 27 27 H 1.48499 * 109.47065 * 330.00162 * 24 22 20 28 28 C 1.47424 * 108.70403 * 1.09516 * 15 14 13 29 29 H 1.08999 * 109.47181 * 269.96956 * 1 2 3 30 30 H 1.08997 * 109.47336 * 29.98152 * 1 2 3 31 31 H 1.09005 * 109.46942 * 149.97316 * 1 2 3 32 32 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 33 33 H 1.09004 * 110.71354 * 324.78172 * 13 11 10 34 34 H 1.08993 * 110.72148 * 88.05279 * 13 11 10 35 35 H 1.08997 * 109.84208 * 262.72423 * 14 13 11 36 36 H 1.09004 * 110.02994 * 141.64611 * 14 13 11 37 37 H 1.09004 * 109.46567 * 300.00397 * 18 16 15 38 38 H 1.08997 * 109.46911 * 59.99339 * 18 16 15 39 39 H 0.97003 * 119.99945 * 179.97438 * 23 22 20 40 40 H 1.08999 * 110.36569 * 217.03397 * 28 15 14 41 41 H 1.09005 * 110.45858 * 94.75620 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5324 0.6837 -0.0005 5 7 3.6057 -0.6013 0.0050 6 1 4.4213 -1.1264 0.0098 7 6 2.3281 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.7423 -2.8065 -0.0007 10 7 2.8587 -3.4816 -0.0006 11 6 2.4550 -4.8898 0.0053 12 1 1.5411 -5.0296 0.5828 13 6 3.5962 -5.7932 0.5429 14 6 3.3094 -7.1508 -0.1337 15 7 2.4954 -6.8806 -1.3278 16 6 2.0195 -7.8094 -2.1806 17 8 1.3561 -7.4706 -3.1378 18 6 2.3110 -9.2690 -1.9447 19 16 1.5418 -10.2569 -3.2517 20 6 2.0294 -11.8715 -2.7417 21 1 2.6283 -11.9991 -1.8522 22 6 1.6445 -12.9795 -3.4839 23 7 2.0082 -14.1857 -3.1027 24 14 0.6090 -12.7589 -5.0229 25 1 1.4999 -12.5906 -6.1990 26 1 -0.2484 -13.9556 -5.2185 27 1 -0.2478 -11.5551 -4.8748 28 6 2.2869 -5.4254 -1.4385 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 3.7998 -3.2467 -0.0001 33 1 4.5691 -5.4083 0.2373 34 1 3.5389 -5.8824 1.6276 35 1 2.7600 -7.7968 0.5511 36 1 4.2453 -7.6287 -0.4234 37 1 3.3890 -9.4302 -1.9544 38 1 1.9077 -9.5682 -0.9773 39 1 1.7389 -14.9600 -3.6212 40 1 1.2836 -5.2129 -1.8075 41 1 3.0343 -4.9823 -2.0968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687140578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:35 Heat of formation + Delta-G solvation = -2.242790 kcal Electronic energy + Delta-G solvation = -25872.042979 eV Core-core repulsion = 21914.248467 eV Total energy + Delta-G solvation = -3957.794513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.52693 -41.44907 -40.50887 -38.54785 -35.89953 -34.89423 -34.67715 -33.60535 -32.24475 -30.92001 -29.53785 -28.58316 -27.84207 -25.65051 -24.61053 -23.45668 -22.15470 -21.89691 -20.83339 -20.18074 -19.60689 -18.26809 -17.91532 -17.70512 -17.61448 -17.14877 -16.77200 -16.60930 -15.94901 -15.73766 -15.57959 -15.05910 -14.90611 -14.85518 -14.52691 -14.23667 -14.03693 -13.89750 -13.72476 -13.49474 -13.35126 -13.02809 -13.02683 -12.83405 -12.70488 -12.64253 -12.32144 -11.89508 -11.88422 -11.70113 -11.40465 -11.17864 -11.10773 -10.61796 -10.54470 -10.32659 -9.77070 -9.02077 -8.52243 -6.23418 -0.29889 0.93392 1.07693 1.30169 1.30414 1.42723 1.47243 1.50424 1.69661 1.82939 2.11714 2.24222 2.67219 2.86036 3.14049 3.25235 3.40988 3.49968 3.71238 3.78508 3.89560 3.94694 4.14444 4.16281 4.27516 4.40013 4.57174 4.60980 4.69051 4.74145 4.75895 4.88679 4.91440 4.99194 5.15647 5.26272 5.33024 5.63201 5.70300 6.10905 6.16717 6.27507 6.82436 6.93148 7.00789 7.09864 8.59774 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.001939 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.091236 B =14434.340463 C =14939.694444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.298 5.298 4 N -0.052 5.052 5 N -0.345 5.345 6 H 0.470 0.530 7 C -0.070 4.070 8 C 0.603 3.397 9 O -0.537 6.537 10 N -0.694 5.694 11 C 0.144 3.856 12 H 0.101 0.899 13 C -0.116 4.116 14 C 0.087 3.913 15 N -0.614 5.614 16 C 0.546 3.454 17 O -0.566 6.566 18 C -0.100 4.100 19 S -0.181 6.181 20 C -0.526 4.526 21 H 0.066 0.934 22 C 0.047 3.953 23 N -0.914 5.914 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.239 1.239 28 C 0.094 3.906 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.419 0.581 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.053 0.947 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 27.253 12.953 31.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 N -0.164 5.164 4 N -0.034 5.034 5 N -0.077 5.077 6 H 0.322 0.678 7 C -0.205 4.205 8 C 0.387 3.613 9 O -0.411 6.411 10 N -0.347 5.347 11 C 0.038 3.962 12 H 0.119 0.881 13 C -0.154 4.154 14 C -0.035 4.035 15 N -0.349 5.349 16 C 0.334 3.666 17 O -0.444 6.444 18 C -0.251 4.251 19 S 0.045 5.955 20 C -0.673 4.673 21 H 0.084 0.916 22 C -0.159 4.159 23 N -0.552 5.552 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.163 1.163 28 C -0.031 4.031 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.257 0.743 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.697 28.638 11.492 31.576 hybrid contribution 0.770 -2.130 0.260 2.280 sum 7.468 26.508 11.753 29.943 Atomic orbital electron populations 1.20370 0.84105 1.04575 1.04495 1.22709 0.99515 0.87217 0.99596 1.74986 0.95720 1.26850 1.18840 1.78153 1.15691 0.93262 1.16250 1.45407 1.08985 1.06336 1.46939 0.67822 1.21834 0.85596 0.95719 1.17329 1.16736 0.85767 0.82498 0.76314 1.90901 1.18056 1.82152 1.49989 1.45451 1.09884 1.04791 1.74563 1.22000 1.00646 0.79420 0.94159 0.88069 1.22972 0.98392 0.91257 1.02809 1.22457 0.96041 0.99504 0.85514 1.48236 1.53243 1.06222 1.27241 1.19735 0.78446 0.86857 0.81515 1.90705 1.40481 1.82123 1.31105 1.23190 1.05715 0.92908 1.03261 1.84817 1.71377 1.01774 1.37507 1.22418 1.38859 0.91130 1.14936 0.91618 1.25522 0.96107 0.93970 1.00272 1.70006 1.45703 0.98705 1.40813 0.85904 0.80484 0.80137 0.80084 1.18702 1.18334 1.16318 1.22627 1.01834 0.79847 0.98754 0.88924 0.89337 0.89568 0.74287 0.86711 0.86105 0.89908 0.89067 0.86659 0.86862 0.91360 0.92876 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.93 71.24 0.71 -0.39 16 2 C 0.05 0.84 7.29 42.04 0.31 1.15 16 3 N -0.30 -5.71 12.35 -47.88 -0.59 -6.31 16 4 N -0.05 -0.78 13.35 37.02 0.49 -0.29 16 5 N -0.35 -2.55 6.97 -48.53 -0.34 -2.89 16 6 H 0.47 -1.24 8.32 -219.89 -1.83 -3.07 16 7 C -0.07 -0.87 7.17 40.41 0.29 -0.58 16 8 C 0.60 7.96 7.81 86.61 0.68 8.64 16 9 O -0.54 -11.51 14.68 -4.09 -0.06 -11.57 16 10 N -0.69 -4.23 5.21 -439.40 -2.29 -6.52 16 11 C 0.14 1.48 3.36 46.39 0.16 1.63 16 12 H 0.10 1.43 7.64 -2.38 -0.02 1.41 16 13 C -0.12 -0.44 6.59 31.80 0.21 -0.23 16 14 C 0.09 1.06 6.49 86.75 0.56 1.62 16 15 N -0.61 -14.08 3.33 -811.70 -2.70 -16.78 16 16 C 0.55 18.92 7.87 87.66 0.69 19.61 16 17 O -0.57 -24.93 16.12 -3.04 -0.05 -24.98 16 18 C -0.10 -3.68 5.35 71.24 0.38 -3.30 16 19 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 20 C -0.53 -30.10 10.04 67.95 0.68 -29.42 16 21 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 22 C 0.05 2.72 5.50 84.86 0.47 3.19 16 23 N -0.91 -54.88 13.97 21.65 0.30 -54.58 16 24 Si 0.91 44.77 27.74 68.60 1.90 46.68 16 25 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 28 C 0.09 1.79 6.60 86.85 0.57 2.36 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.41 6.62 -2.38 -0.02 1.39 16 32 H 0.42 -0.98 7.80 -92.71 -0.72 -1.70 16 33 H 0.11 -0.18 8.00 -2.38 -0.02 -0.20 16 34 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.05 1.40 8.04 -2.39 -0.02 1.39 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -86.50 365.09 -0.17 -86.67 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -1.49 Total: -3.55 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.70 Total: 4.28 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -5.12 Total: -87.36 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.11 Total: -36.55 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -86.50 -0.17 -86.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687140578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.424 kcal (2) G-P(sol) polarization free energy of solvation -86.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds