Wall clock time and date at job start Tue Mar 31 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46801 * 240.00212 * 3 2 1 5 5 H 1.48500 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47078 * 120.00057 * 3 2 1 7 7 C 1.38791 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99951 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00366 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47545 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00296 * 179.97438 * 11 10 9 14 14 C 1.43463 * 118.94328 * 179.97438 * 13 11 10 15 15 C 1.53791 * 107.96758 * 273.63303 * 14 13 11 16 16 C 1.47141 * 111.84010 * 281.67225 * 15 14 13 17 17 N 1.48206 * 110.34421 * 58.29393 * 16 15 14 18 18 C 1.34778 * 119.97459 * 102.46905 * 17 16 15 19 19 O 1.21555 * 119.99739 * 5.41978 * 18 17 16 20 20 C 1.47870 * 120.00114 * 185.42496 * 18 17 16 21 21 N 1.34552 * 126.04379 * 186.05703 * 20 18 17 22 22 C 1.30871 * 107.26516 * 179.97438 * 21 20 18 23 23 N 1.34590 * 107.62730 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.74449 * 179.97438 * 23 22 21 25 25 N 1.28845 * 108.50247 * 0.02562 * 23 22 21 26 26 C 1.43620 * 120.05648 * 282.74258 * 17 16 15 27 27 C 1.48865 * 118.94055 * 359.97438 * 13 11 10 28 28 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46973 * 59.99148 * 10 9 7 30 30 H 1.08999 * 109.46738 * 299.99932 * 10 9 7 31 31 H 1.09001 * 109.76728 * 154.00995 * 14 13 11 32 32 H 1.09006 * 109.75891 * 33.25010 * 14 13 11 33 33 H 1.08998 * 109.01192 * 161.06427 * 15 14 13 34 34 H 1.09002 * 108.94404 * 42.23465 * 15 14 13 35 35 H 1.09003 * 109.32443 * 298.02858 * 16 15 14 36 36 H 1.08997 * 109.32821 * 178.56481 * 16 15 14 37 37 H 1.08001 * 126.18938 * 179.74001 * 22 21 20 38 38 H 1.09004 * 108.87545 * 211.19914 * 26 17 16 39 39 H 1.09003 * 108.87729 * 329.62799 * 26 17 16 40 40 H 1.09001 * 109.47198 * 260.60354 * 27 13 11 41 41 H 1.09001 * 109.47877 * 20.61995 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8444 -6.3430 -0.0018 14 6 2.3166 -7.6771 -0.0018 15 6 2.0566 -8.0844 1.4582 16 6 3.2970 -8.4741 2.1470 17 7 4.2735 -7.3595 2.1197 18 6 4.4602 -6.6008 3.2178 19 8 3.9024 -6.8901 4.2584 20 6 5.3433 -5.4163 3.1568 21 7 5.7056 -4.6445 4.1976 22 6 6.4888 -3.7056 3.7309 23 7 6.6101 -3.8981 2.4043 24 1 7.1327 -3.3506 1.7977 25 7 5.9142 -4.9315 2.0759 26 6 5.0168 -7.0836 0.9222 27 6 4.3079 -6.0709 -0.0024 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7312 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.0382 -8.3589 -0.4518 32 1 1.3830 -7.7040 -0.5639 33 1 1.3627 -8.9248 1.4741 34 1 1.6070 -7.2431 1.9856 35 1 3.7278 -9.3433 1.6499 36 1 3.0700 -8.7295 3.1820 37 1 6.9510 -2.9166 4.3055 38 1 5.9916 -6.6806 1.1972 39 1 5.1642 -8.0153 0.3760 40 1 4.6953 -6.1693 -1.0165 41 1 4.4897 -5.0590 0.3596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687247374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:37 Heat of formation + Delta-G solvation = 50.485015 kcal Electronic energy + Delta-G solvation = -28250.938087 eV Core-core repulsion = 24295.430024 eV Total energy + Delta-G solvation = -3955.508063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.70043 -40.59311 -39.15697 -36.95833 -34.42613 -33.86678 -33.55606 -32.45131 -31.47318 -29.63690 -28.53919 -26.31273 -25.47036 -24.83598 -23.25990 -22.85098 -21.86642 -19.80471 -19.04772 -18.66006 -17.91027 -17.28912 -16.93331 -16.55377 -16.36872 -15.77147 -15.45966 -14.97573 -14.84218 -14.78340 -14.25209 -14.06661 -13.86989 -13.63974 -13.19094 -13.15323 -12.77694 -12.61577 -12.24886 -11.96190 -11.72787 -11.49301 -11.22314 -11.08139 -11.06851 -11.02317 -10.87149 -10.79359 -10.64024 -10.29407 -9.88561 -9.83267 -9.36143 -9.08594 -8.92827 -8.43234 -8.22935 -6.50653 -6.23288 -3.93615 1.12572 1.93626 2.31671 2.64886 2.99447 3.09323 3.18452 3.20717 3.22372 3.25248 3.59775 3.89032 4.17584 4.25648 4.52306 4.67012 4.73672 4.76749 4.84350 5.11136 5.11841 5.19661 5.28443 5.35559 5.49735 5.55552 5.57668 5.64992 5.71644 5.77973 5.88185 5.97282 6.03443 6.09724 6.20641 6.33981 6.48965 6.84629 7.09788 7.51771 7.55200 7.69355 8.00074 8.31597 8.61758 9.21003 10.84219 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.004484 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.900977 B = 6242.937371 C = 7935.330336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.068 0.932 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.530 3.470 12 O -0.514 6.514 13 N -0.615 5.615 14 C 0.123 3.877 15 C -0.163 4.163 16 C 0.123 3.877 17 N -0.588 5.588 18 C 0.615 3.385 19 O -0.507 6.507 20 C 0.154 3.846 21 N -0.461 5.461 22 C 0.203 3.797 23 N -0.398 5.398 24 H 0.453 0.547 25 N -0.275 5.275 26 C 0.095 3.905 27 C 0.092 3.908 28 H 0.269 0.731 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.231 0.769 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.381 -14.379 1.008 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.683 4.683 8 H 0.087 0.913 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.351 5.351 14 C -0.001 4.001 15 C -0.202 4.202 16 C 0.003 3.997 17 N -0.322 5.322 18 C 0.399 3.601 19 O -0.377 6.377 20 C -0.126 4.126 21 N -0.185 5.185 22 C -0.095 4.095 23 N -0.121 5.121 24 H 0.299 0.701 25 N -0.117 5.117 26 C -0.031 4.031 27 C -0.032 4.032 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.247 0.753 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.836 -15.203 1.430 21.999 hybrid contribution 2.569 2.139 -0.395 3.366 sum 18.405 -13.064 1.035 22.594 Atomic orbital electron populations 1.70007 1.05933 1.27559 1.46627 1.24978 0.95014 0.98930 0.94591 0.86248 0.79305 0.81446 0.78613 1.19974 1.20706 1.20061 1.22766 0.94634 0.91766 1.59146 0.91332 1.85421 1.05018 0.96207 1.96639 1.23508 1.06227 0.95897 1.04020 1.20310 0.86322 0.86432 0.75179 1.90692 1.15153 1.85373 1.47647 1.47765 1.06184 1.05808 1.75341 1.20955 1.00070 0.83224 0.95824 1.21573 0.97853 1.03324 0.97488 1.20787 0.88532 0.87242 1.03173 1.47267 1.41718 1.32089 1.11091 1.16421 0.79910 0.80023 0.83791 1.90825 1.47994 1.69304 1.29603 1.23734 1.02952 1.00203 0.85724 1.71312 1.12598 1.04706 1.29903 1.26742 0.98856 1.00479 0.83429 1.45234 1.35567 1.21413 1.09848 0.70062 1.74359 1.09946 1.01541 1.25855 1.21745 0.95954 0.99478 0.85888 1.22870 0.79457 1.01455 0.99377 0.92093 0.90097 0.89610 0.90869 0.89629 0.89712 0.90605 0.90475 0.88751 0.75313 0.87871 0.90294 0.90591 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.83 7.80 -52.48 -0.41 1.43 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.09 4.53 36.00 0.16 -2.93 16 11 C 0.53 10.47 7.40 -10.99 -0.08 10.38 16 12 O -0.51 -12.08 15.36 5.55 0.09 -11.99 16 13 N -0.62 -8.83 2.50 -172.76 -0.43 -9.26 16 14 C 0.12 1.46 5.33 -5.24 -0.03 1.43 16 15 C -0.16 -1.91 5.64 -29.13 -0.16 -2.08 16 16 C 0.12 1.27 5.73 -5.92 -0.03 1.23 16 17 N -0.59 -6.96 2.47 -178.09 -0.44 -7.40 16 18 C 0.61 9.44 7.67 -12.32 -0.09 9.35 16 19 O -0.51 -9.48 16.52 5.32 0.09 -9.40 16 20 C 0.15 2.18 7.57 -156.35 -1.18 0.99 16 21 N -0.46 -6.48 11.41 -12.36 -0.14 -6.62 16 22 C 0.20 1.75 13.14 -90.48 -1.19 0.56 16 23 N -0.40 -3.02 6.93 29.57 0.20 -2.81 16 24 H 0.45 1.54 8.96 -190.21 -1.71 -0.17 16 25 N -0.27 -2.95 7.20 32.07 0.23 -2.72 16 26 C 0.09 0.86 4.73 -4.85 -0.02 0.84 16 27 C 0.09 1.01 6.25 -2.02 -0.01 1.00 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.08 1.69 7.41 -51.92 -0.38 1.30 16 30 H 0.09 1.66 8.08 -51.92 -0.42 1.24 16 31 H 0.07 0.62 7.58 -51.93 -0.39 0.22 16 32 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 35 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 36 H 0.09 1.08 7.08 -51.93 -0.37 0.71 16 37 H 0.23 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.10 0.88 5.52 -51.93 -0.29 0.60 16 39 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.22 4.34 -51.93 -0.23 0.99 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -41.14 350.56 -10.28 -51.42 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.21 Total: -1.05 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -2.45 Total: 7.84 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.16 Total: -54.38 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.17 Total: -21.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -41.14 -10.28 -51.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687247374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.901 kcal (2) G-P(sol) polarization free energy of solvation -41.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds