Wall clock time and date at job start Tue Mar 31 2020 22:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46801 * 240.00212 * 3 2 1 5 5 H 1.48500 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47078 * 120.00057 * 3 2 1 7 7 C 1.38791 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99951 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00366 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47545 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99871 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00296 * 179.97438 * 11 10 9 14 14 C 1.43463 * 118.94328 * 179.97438 * 13 11 10 15 15 C 1.53791 * 107.96758 * 273.63303 * 14 13 11 16 16 C 1.47141 * 111.84010 * 281.67225 * 15 14 13 17 17 N 1.48206 * 110.34421 * 58.29393 * 16 15 14 18 18 C 1.34778 * 119.97459 * 102.46905 * 17 16 15 19 19 O 1.21555 * 119.99739 * 5.41978 * 18 17 16 20 20 C 1.47870 * 120.00114 * 185.42496 * 18 17 16 21 21 N 1.34552 * 126.04379 * 186.05703 * 20 18 17 22 22 C 1.30871 * 107.26516 * 179.97438 * 21 20 18 23 23 N 1.34590 * 107.62730 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.74449 * 179.97438 * 23 22 21 25 25 N 1.28845 * 108.50247 * 0.02562 * 23 22 21 26 26 C 1.43620 * 120.05648 * 282.74258 * 17 16 15 27 27 C 1.48865 * 118.94055 * 359.97438 * 13 11 10 28 28 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46973 * 59.99148 * 10 9 7 30 30 H 1.08999 * 109.46738 * 299.99932 * 10 9 7 31 31 H 1.09001 * 109.76728 * 154.00995 * 14 13 11 32 32 H 1.09006 * 109.75891 * 33.25010 * 14 13 11 33 33 H 1.08998 * 109.01192 * 161.06427 * 15 14 13 34 34 H 1.09002 * 108.94404 * 42.23465 * 15 14 13 35 35 H 1.09003 * 109.32443 * 298.02858 * 16 15 14 36 36 H 1.08997 * 109.32821 * 178.56481 * 16 15 14 37 37 H 1.08001 * 126.18938 * 179.74001 * 22 21 20 38 38 H 1.09004 * 108.87545 * 211.19914 * 26 17 16 39 39 H 1.09003 * 108.87729 * 329.62799 * 26 17 16 40 40 H 1.09001 * 109.47198 * 260.60354 * 27 13 11 41 41 H 1.09001 * 109.47877 * 20.61995 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8444 -6.3430 -0.0018 14 6 2.3166 -7.6771 -0.0018 15 6 2.0566 -8.0844 1.4582 16 6 3.2970 -8.4741 2.1470 17 7 4.2735 -7.3595 2.1197 18 6 4.4602 -6.6008 3.2178 19 8 3.9024 -6.8901 4.2584 20 6 5.3433 -5.4163 3.1568 21 7 5.7056 -4.6445 4.1976 22 6 6.4888 -3.7056 3.7309 23 7 6.6101 -3.8981 2.4043 24 1 7.1327 -3.3506 1.7977 25 7 5.9142 -4.9315 2.0759 26 6 5.0168 -7.0836 0.9222 27 6 4.3079 -6.0709 -0.0024 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7312 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.0382 -8.3589 -0.4518 32 1 1.3830 -7.7040 -0.5639 33 1 1.3627 -8.9248 1.4741 34 1 1.6070 -7.2431 1.9856 35 1 3.7278 -9.3433 1.6499 36 1 3.0700 -8.7295 3.1820 37 1 6.9510 -2.9166 4.3055 38 1 5.9916 -6.6806 1.1972 39 1 5.1642 -8.0153 0.3760 40 1 4.6953 -6.1693 -1.0165 41 1 4.4897 -5.0590 0.3596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687247374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:36 Heat of formation + Delta-G solvation = 19.936602 kcal Electronic energy + Delta-G solvation = -28252.262766 eV Core-core repulsion = 24295.430024 eV Total energy + Delta-G solvation = -3956.832742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.49909 -41.69324 -40.45694 -38.18346 -35.63263 -34.80884 -34.61888 -34.41796 -32.30961 -31.16069 -29.55013 -27.82085 -27.20018 -25.80010 -24.02546 -23.88138 -22.84415 -20.72050 -20.43558 -19.64655 -19.39632 -18.48381 -18.12399 -17.77952 -17.27681 -16.92170 -16.84127 -16.72999 -16.09522 -15.90538 -15.62977 -15.24556 -15.01963 -14.90286 -14.55725 -14.24152 -14.08540 -13.91591 -13.51460 -13.21142 -13.13834 -12.88885 -12.70565 -12.66008 -12.36696 -12.19222 -11.95878 -11.77209 -11.73917 -11.51714 -11.37498 -11.15685 -10.92342 -10.69295 -10.32086 -9.93813 -9.58484 -8.72701 -8.37131 -6.17191 0.22601 1.12608 1.22048 1.41464 1.42973 1.51119 1.54396 1.55237 1.95644 2.17305 2.20149 2.24776 2.96855 3.03754 3.21577 3.47251 3.63111 3.81681 3.91589 3.95667 4.02674 4.13509 4.17753 4.31850 4.33383 4.49120 4.56031 4.68246 4.77120 4.78880 4.84910 4.92069 5.01341 5.20258 5.28207 5.35612 5.47115 5.73425 5.92964 6.13768 6.15559 6.24767 6.81771 7.02736 7.07127 7.16048 8.72276 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.004484 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.900977 B = 6242.937371 C = 7935.330336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.156 6.156 10 C -0.113 4.113 11 C 0.523 3.477 12 O -0.565 6.565 13 N -0.598 5.598 14 C 0.119 3.881 15 C -0.153 4.153 16 C 0.121 3.879 17 N -0.582 5.582 18 C 0.602 3.398 19 O -0.561 6.561 20 C 0.120 3.880 21 N -0.518 5.518 22 C 0.217 3.783 23 N -0.380 5.380 24 H 0.472 0.528 25 N -0.260 5.260 26 C 0.094 3.906 27 C 0.085 3.915 28 H 0.271 0.729 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.017 0.983 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.277 0.723 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.494 -14.679 -0.646 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.071 5.929 10 C -0.264 4.264 11 C 0.310 3.690 12 O -0.444 6.444 13 N -0.332 5.332 14 C -0.003 4.003 15 C -0.193 4.193 16 C 0.001 3.999 17 N -0.313 5.313 18 C 0.387 3.613 19 O -0.436 6.436 20 C -0.159 4.159 21 N -0.244 5.244 22 C -0.080 4.080 23 N -0.106 5.106 24 H 0.324 0.676 25 N -0.104 5.104 26 C -0.031 4.031 27 C -0.037 4.037 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.036 0.964 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.293 0.707 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.034 -15.537 -0.282 25.354 hybrid contribution 1.378 2.161 0.091 2.565 sum 21.412 -13.376 -0.190 25.248 Atomic orbital electron populations 1.70194 1.08169 1.28750 1.47806 1.26194 0.95974 1.03479 0.93570 0.84974 0.77854 0.75323 0.79658 1.18113 1.20502 1.18500 1.23098 0.95146 0.91723 1.59251 0.89997 1.85654 1.10765 0.99543 1.96965 1.23263 1.03004 0.95182 1.04973 1.20162 0.86243 0.87036 0.75540 1.90670 1.17294 1.85928 1.50496 1.47806 1.07207 1.05454 1.72730 1.21233 1.00856 0.82509 0.95749 1.21497 0.98907 1.01940 0.96930 1.20949 0.87985 0.88281 1.02654 1.47451 1.41376 1.31464 1.11047 1.16896 0.79751 0.80634 0.84062 1.90774 1.50297 1.70864 1.31698 1.23591 1.04638 1.00902 0.86764 1.71236 1.14924 1.06666 1.31524 1.27545 0.96958 0.99750 0.83725 1.45286 1.34541 1.20529 1.10212 0.67607 1.74250 1.09464 1.02043 1.24668 1.21989 0.95339 1.01126 0.84599 1.23222 0.77095 1.01368 1.02058 0.91969 0.89921 0.87403 0.85413 0.91542 0.87406 0.96364 0.85288 0.90577 0.70750 0.86965 0.85770 0.86692 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 2 C 0.01 0.71 5.49 84.85 0.47 1.18 16 3 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -31.38 9.50 67.95 0.65 -30.73 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 9 S -0.16 -9.05 20.57 -56.49 -1.16 -10.21 16 10 C -0.11 -4.82 4.53 71.23 0.32 -4.50 16 11 C 0.52 20.96 7.40 87.66 0.65 21.61 16 12 O -0.57 -27.90 15.36 -3.04 -0.05 -27.94 16 13 N -0.60 -16.16 2.50 -818.87 -2.05 -18.21 16 14 C 0.12 2.55 5.33 87.21 0.47 3.02 16 15 C -0.15 -3.50 5.64 29.04 0.16 -3.33 16 16 C 0.12 2.27 5.73 84.23 0.48 2.75 16 17 N -0.58 -12.82 2.47 -835.64 -2.06 -14.88 16 18 C 0.60 18.85 7.67 86.79 0.67 19.51 16 19 O -0.56 -22.40 16.52 -3.89 -0.06 -22.46 16 20 C 0.12 3.36 7.57 137.13 1.04 4.40 16 21 N -0.52 -14.50 11.41 -193.02 -2.20 -16.70 16 22 C 0.22 3.29 13.14 180.30 2.37 5.65 16 23 N -0.38 -4.72 6.93 -60.37 -0.42 -5.14 16 24 H 0.47 1.50 8.96 -219.80 -1.97 -0.47 16 25 N -0.26 -5.07 7.20 -52.43 -0.38 -5.45 16 26 C 0.09 1.32 4.73 87.38 0.41 1.73 16 27 C 0.08 1.56 6.25 86.39 0.54 2.10 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.08 3.47 7.41 -2.40 -0.02 3.45 16 30 H 0.11 4.06 8.08 -2.40 -0.02 4.04 16 31 H 0.13 1.41 7.58 -2.39 -0.02 1.39 16 32 H 0.07 1.73 7.40 -2.38 -0.02 1.72 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.02 0.62 7.89 -2.39 -0.02 0.60 16 35 H 0.13 1.14 8.06 -2.39 -0.02 1.12 16 36 H 0.08 1.75 7.08 -2.39 -0.02 1.74 16 37 H 0.28 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.11 1.48 5.52 -2.38 -0.01 1.47 16 39 H 0.12 0.73 7.73 -2.39 -0.02 0.72 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.77 4.34 -2.39 -0.01 1.76 16 Total: -1.00 -99.95 350.56 1.27 -98.68 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -0.87 Total: 10.60 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 8.22 Total: 23.39 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.83 Total: -117.00 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.11 Total: -50.41 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.16 Total: -10.21 kcal Total: -99.95 1.27 -98.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687247374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.614 kcal (2) G-P(sol) polarization free energy of solvation -99.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds