Wall clock time and date at job start Tue Mar 31 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46932 * 274.98865 * 3 2 1 5 5 H 1.48504 * 109.46832 * 34.98519 * 3 2 1 6 6 H 1.48493 * 109.47329 * 154.98212 * 3 2 1 7 7 C 1.38814 * 120.00677 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00149 * 185.08840 * 7 2 1 9 9 N 1.36938 * 119.99419 * 5.08351 * 7 2 1 10 10 C 1.47717 * 134.43074 * 173.50258 * 9 7 2 11 11 C 1.53229 * 85.89671 * 155.90106 * 10 9 7 12 12 C 1.47720 * 134.43753 * 353.53213 * 9 7 2 13 13 C 1.53436 * 114.99082 * 139.52198 * 11 10 9 14 14 C 1.54989 * 103.85403 * 132.14500 * 13 11 10 15 15 H 1.09000 * 110.87383 * 262.75415 * 14 13 11 16 16 N 1.46503 * 110.87284 * 139.05996 * 14 13 11 17 17 C 1.34775 * 119.99933 * 155.00214 * 16 14 13 18 18 O 1.21552 * 119.99797 * 359.97438 * 17 16 14 19 19 C 1.47880 * 120.00278 * 180.02562 * 17 16 14 20 20 N 1.32844 * 119.71787 * 359.72168 * 19 17 16 21 21 C 1.31370 * 121.68774 * 179.74946 * 20 19 17 22 22 C 1.38999 * 120.93264 * 0.52930 * 21 20 19 23 23 F 1.35097 * 120.33431 * 179.71624 * 22 21 20 24 24 C 1.38725 * 119.34079 * 359.74568 * 22 21 20 25 25 C 1.38829 * 118.45194 * 359.97438 * 24 22 21 26 26 F 1.35101 * 120.48957 * 180.02562 * 25 24 22 27 27 C 1.55052 * 102.11628 * 20.90675 * 14 13 11 28 28 O 1.42970 * 115.34225 * 266.49812 * 11 10 9 29 29 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 30 30 H 1.09008 * 113.80485 * 41.66362 * 10 9 7 31 31 H 1.08995 * 113.91681 * 270.15886 * 10 9 7 32 32 H 1.08994 * 113.80478 * 89.85084 * 12 9 7 33 33 H 1.09005 * 113.80231 * 318.34587 * 12 9 7 34 34 H 1.09005 * 110.55221 * 250.73840 * 13 11 10 35 35 H 1.08997 * 110.55090 * 13.40649 * 13 11 10 36 36 H 0.96993 * 120.00131 * 334.99996 * 16 14 13 37 37 H 1.07995 * 119.53348 * 180.27493 * 21 20 19 38 38 H 1.07998 * 120.77644 * 179.97438 * 24 22 21 39 39 H 1.09005 * 110.59433 * 81.93931 * 27 14 13 40 40 H 1.08996 * 110.59088 * 204.70878 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5041 2.6200 0.8028 6 1 3.5963 1.4123 0.5921 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0835 9 7 1.3297 -2.3857 -0.1040 10 6 1.7308 -3.7993 -0.2552 11 6 0.3721 -4.1369 0.3676 12 6 -0.0993 -2.7599 -0.1113 13 6 -0.3545 -5.3290 -0.2688 14 6 -0.7940 -6.1868 0.9449 15 1 -0.0857 -6.9953 1.1260 16 7 -2.1483 -6.7107 0.7508 17 6 -2.5328 -7.8360 1.3851 18 8 -1.7558 -8.4164 2.1179 19 6 -3.8996 -8.3653 1.1888 20 7 -4.7457 -7.7241 0.3903 21 6 -5.9669 -8.1623 0.1844 22 6 -6.4265 -9.3165 0.8077 23 9 -7.6866 -9.7532 0.5917 24 6 -5.5785 -10.0154 1.6545 25 6 -4.2917 -9.5319 1.8485 26 9 -3.4315 -10.1802 2.6639 27 6 -0.7615 -5.1547 2.1016 28 8 0.3780 -4.3233 1.7851 29 1 -0.4851 0.8400 -0.0004 30 1 2.5815 -4.0840 0.3641 31 1 1.8319 -4.1215 -1.2915 32 1 -0.5466 -2.7691 -1.1052 33 1 -0.6990 -2.2206 0.6220 34 1 -1.2237 -4.9907 -0.8330 35 1 0.3227 -5.8909 -0.9120 36 1 -2.7682 -6.2478 0.1659 37 1 -6.6245 -7.6158 -0.4754 38 1 -5.9115 -10.9148 2.1511 39 1 -1.6766 -4.5625 2.1129 40 1 -0.6190 -5.6561 3.0589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688157465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:18 Heat of formation + Delta-G solvation = -56.920641 kcal Electronic energy + Delta-G solvation = -28601.393640 eV Core-core repulsion = 24055.094980 eV Total energy + Delta-G solvation = -4546.298660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -49.80420 -49.53391 -41.01702 -40.04205 -38.95898 -36.19064 -34.60300 -33.15543 -32.07677 -31.76368 -30.21481 -28.07812 -25.73575 -25.46067 -24.93048 -24.44521 -22.43437 -21.54500 -20.89209 -19.05521 -18.98314 -18.81577 -18.33347 -16.93646 -16.69919 -16.57108 -16.48664 -16.02836 -15.74850 -15.15643 -15.14273 -15.09317 -14.94807 -14.73740 -14.16336 -13.95345 -13.84497 -13.56120 -13.26701 -13.12262 -13.02542 -12.78916 -12.06197 -11.77298 -11.56335 -11.17015 -11.09722 -10.90640 -10.82641 -10.57622 -10.48906 -10.28921 -10.19806 -9.77550 -9.64067 -9.51921 -9.18820 -8.80306 -8.76076 -6.83684 -5.73761 -3.04274 -0.31340 0.14931 2.10803 2.58215 3.00727 3.04318 3.31018 3.42497 3.44527 3.47468 3.49761 3.84992 3.97542 4.27002 4.36828 4.48837 4.62203 4.74766 4.90742 4.94016 5.03304 5.11703 5.25880 5.35846 5.37477 5.61027 5.71798 5.86259 5.91777 5.96253 6.07703 6.29944 6.38507 6.53836 6.62337 6.74237 6.95373 7.22112 7.25280 7.53617 7.70960 7.85954 8.01748 9.08346 9.74609 10.62835 11.44300 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002206 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.975122 B =12688.504280 C =13441.260339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.124 3.876 11 C 0.057 3.943 12 C 0.157 3.843 13 C -0.146 4.146 14 C 0.109 3.891 15 H 0.108 0.892 16 N -0.692 5.692 17 C 0.570 3.430 18 O -0.517 6.517 19 C 0.037 3.963 20 N -0.399 5.399 21 C 0.068 3.932 22 C 0.105 3.895 23 F -0.114 7.114 24 C -0.158 4.158 25 C 0.145 3.855 26 F -0.094 7.094 27 C 0.038 3.962 28 O -0.333 6.333 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.186 0.814 38 H 0.169 0.831 39 H 0.063 0.937 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 -22.070 -0.030 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.002 4.002 11 C 0.015 3.985 12 C 0.031 3.969 13 C -0.185 4.185 14 C 0.005 3.995 15 H 0.126 0.874 16 N -0.344 5.344 17 C 0.353 3.647 18 O -0.392 6.392 19 C -0.102 4.102 20 N -0.109 5.109 21 C -0.094 4.094 22 C 0.083 3.917 23 F -0.092 7.092 24 C -0.185 4.185 25 C 0.122 3.878 26 F -0.071 7.071 27 C -0.040 4.040 28 O -0.250 6.250 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.250 0.750 37 H 0.203 0.797 38 H 0.187 0.813 39 H 0.081 0.919 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.379 -21.282 0.313 25.686 hybrid contribution -0.619 0.081 -0.023 0.625 sum -14.998 -21.201 0.290 25.971 Atomic orbital electron populations 1.69825 1.05048 1.25270 1.56653 1.24801 0.95689 0.97502 1.02485 0.86113 0.78783 0.83584 0.77415 1.21687 1.21737 1.20541 1.19006 0.90752 0.81891 1.42954 0.90159 1.45779 1.02066 1.00589 1.84671 1.22702 0.94289 0.86523 0.96653 1.23814 0.98571 0.94632 0.81457 1.22597 0.88662 0.87721 0.97895 1.23073 1.01646 0.96590 0.97160 1.22779 0.83016 0.97230 0.96514 0.87370 1.45758 1.15264 1.25743 1.47659 1.17505 0.84871 0.81369 0.80908 1.90895 1.52348 1.58876 1.37074 1.21527 0.96452 0.93890 0.98332 1.67716 1.02485 1.28875 1.11834 1.23115 0.93046 0.93545 0.99741 1.18776 0.80750 0.94929 0.97219 1.91601 1.35963 1.88807 1.92875 1.21713 0.92317 1.03317 1.01175 1.18307 0.87595 0.91180 0.90722 1.91684 1.67961 1.79168 1.68330 1.23890 0.91058 0.91016 0.98036 1.88894 1.45189 1.69651 1.21276 0.93720 0.92985 0.93562 0.94550 0.90791 0.89751 0.89622 0.74966 0.79708 0.81336 0.91920 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.67 11.51 55.49 0.64 -27.03 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.53 29.56 -169.99 -5.02 17.51 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.30 10.69 -15.06 -0.16 -6.46 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.61 -15.95 3.70 -181.57 -0.67 -16.62 16 10 C 0.12 2.60 8.34 -3.26 -0.03 2.57 16 11 C 0.06 1.08 1.53 -90.28 -0.14 0.94 16 12 C 0.16 3.69 6.81 -3.27 -0.02 3.67 16 13 C -0.15 -2.02 6.22 -25.45 -0.16 -2.18 16 14 C 0.11 1.45 3.51 -65.79 -0.23 1.22 16 15 H 0.11 1.50 7.55 -51.93 -0.39 1.11 16 16 N -0.69 -7.89 5.18 -52.67 -0.27 -8.16 16 17 C 0.57 7.05 7.80 -12.31 -0.10 6.95 16 18 O -0.52 -7.96 14.96 5.32 0.08 -7.88 16 19 C 0.04 0.37 6.75 -82.96 -0.56 -0.19 16 20 N -0.40 -3.30 9.53 -9.70 -0.09 -3.39 16 21 C 0.07 0.39 11.17 -17.47 -0.20 0.20 16 22 C 0.11 0.59 7.35 -39.12 -0.29 0.31 16 23 F -0.11 -0.64 17.28 2.25 0.04 -0.60 16 24 C -0.16 -0.95 10.14 -39.18 -0.40 -1.35 16 25 C 0.15 1.30 7.31 -38.84 -0.28 1.02 16 26 F -0.09 -1.03 15.54 2.25 0.04 -0.99 16 27 C 0.04 0.60 7.42 38.24 0.28 0.88 16 28 O -0.33 -6.68 11.29 -35.23 -0.40 -7.08 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 31 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.07 1.97 7.38 -51.93 -0.38 1.58 16 34 H 0.08 1.06 7.52 -51.93 -0.39 0.67 16 35 H 0.09 1.06 7.93 -51.93 -0.41 0.65 16 36 H 0.41 4.06 7.73 -40.82 -0.32 3.74 16 37 H 0.19 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 351.38 15.07 5.30 5.30 Total: -1.00 -34.62 351.38 -7.13 -41.75 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.39 Total: -0.03 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.37 Total: 7.24 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.40 Total: -55.21 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.32 Total: -14.96 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.07 Total: -1.59 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.62 -7.13 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688157465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.169 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds