Wall clock time and date at job start Tue Mar 31 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46932 * 274.98865 * 3 2 1 5 5 H 1.48504 * 109.46832 * 34.98519 * 3 2 1 6 6 H 1.48493 * 109.47329 * 154.98212 * 3 2 1 7 7 C 1.38814 * 120.00677 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00149 * 185.08840 * 7 2 1 9 9 N 1.36938 * 119.99419 * 5.08351 * 7 2 1 10 10 C 1.47717 * 134.43074 * 173.50258 * 9 7 2 11 11 C 1.53229 * 85.89671 * 155.90106 * 10 9 7 12 12 C 1.47720 * 134.43753 * 353.53213 * 9 7 2 13 13 C 1.53436 * 114.99082 * 139.52198 * 11 10 9 14 14 C 1.54989 * 103.85403 * 132.14500 * 13 11 10 15 15 H 1.09000 * 110.87383 * 262.75415 * 14 13 11 16 16 N 1.46503 * 110.87284 * 139.05996 * 14 13 11 17 17 C 1.34775 * 119.99933 * 155.00214 * 16 14 13 18 18 O 1.21552 * 119.99797 * 359.97438 * 17 16 14 19 19 C 1.47880 * 120.00278 * 180.02562 * 17 16 14 20 20 N 1.32844 * 119.71787 * 359.72168 * 19 17 16 21 21 C 1.31370 * 121.68774 * 179.74946 * 20 19 17 22 22 C 1.38999 * 120.93264 * 0.52930 * 21 20 19 23 23 F 1.35097 * 120.33431 * 179.71624 * 22 21 20 24 24 C 1.38725 * 119.34079 * 359.74568 * 22 21 20 25 25 C 1.38829 * 118.45194 * 359.97438 * 24 22 21 26 26 F 1.35101 * 120.48957 * 180.02562 * 25 24 22 27 27 C 1.55052 * 102.11628 * 20.90675 * 14 13 11 28 28 O 1.42970 * 115.34225 * 266.49812 * 11 10 9 29 29 H 0.96997 * 120.00697 * 0.02562 * 1 2 3 30 30 H 1.09008 * 113.80485 * 41.66362 * 10 9 7 31 31 H 1.08995 * 113.91681 * 270.15886 * 10 9 7 32 32 H 1.08994 * 113.80478 * 89.85084 * 12 9 7 33 33 H 1.09005 * 113.80231 * 318.34587 * 12 9 7 34 34 H 1.09005 * 110.55221 * 250.73840 * 13 11 10 35 35 H 1.08997 * 110.55090 * 13.40649 * 13 11 10 36 36 H 0.96993 * 120.00131 * 334.99996 * 16 14 13 37 37 H 1.07995 * 119.53348 * 180.27493 * 21 20 19 38 38 H 1.07998 * 120.77644 * 179.97438 * 24 22 21 39 39 H 1.09005 * 110.59433 * 81.93931 * 27 14 13 40 40 H 1.08996 * 110.59088 * 204.70878 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5041 2.6200 0.8028 6 1 3.5963 1.4123 0.5921 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0835 9 7 1.3297 -2.3857 -0.1040 10 6 1.7308 -3.7993 -0.2552 11 6 0.3721 -4.1369 0.3676 12 6 -0.0993 -2.7599 -0.1113 13 6 -0.3545 -5.3290 -0.2688 14 6 -0.7940 -6.1868 0.9449 15 1 -0.0857 -6.9953 1.1260 16 7 -2.1483 -6.7107 0.7508 17 6 -2.5328 -7.8360 1.3851 18 8 -1.7558 -8.4164 2.1179 19 6 -3.8996 -8.3653 1.1888 20 7 -4.7457 -7.7241 0.3903 21 6 -5.9669 -8.1623 0.1844 22 6 -6.4265 -9.3165 0.8077 23 9 -7.6866 -9.7532 0.5917 24 6 -5.5785 -10.0154 1.6545 25 6 -4.2917 -9.5319 1.8485 26 9 -3.4315 -10.1802 2.6639 27 6 -0.7615 -5.1547 2.1016 28 8 0.3780 -4.3233 1.7851 29 1 -0.4851 0.8400 -0.0004 30 1 2.5815 -4.0840 0.3641 31 1 1.8319 -4.1215 -1.2915 32 1 -0.5466 -2.7691 -1.1052 33 1 -0.6990 -2.2206 0.6220 34 1 -1.2237 -4.9907 -0.8330 35 1 0.3227 -5.8909 -0.9120 36 1 -2.7682 -6.2478 0.1659 37 1 -6.6245 -7.6158 -0.4754 38 1 -5.9115 -10.9148 2.1511 39 1 -1.6766 -4.5625 2.1129 40 1 -0.6190 -5.6561 3.0589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688157465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:17 Heat of formation + Delta-G solvation = -82.375847 kcal Electronic energy + Delta-G solvation = -28602.497460 eV Core-core repulsion = 24055.094980 eV Total energy + Delta-G solvation = -4547.402481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.27567 -50.23847 -41.85540 -41.24526 -40.00128 -37.78018 -35.78141 -34.14058 -33.74745 -32.50596 -31.36770 -29.75234 -27.39790 -26.70564 -26.14609 -25.04972 -23.92274 -22.82521 -21.93851 -20.63078 -19.70481 -19.40721 -19.05372 -18.68863 -17.63087 -17.52827 -17.12337 -16.98626 -16.69221 -16.61552 -16.40768 -16.21919 -16.06013 -15.68054 -15.48321 -15.04369 -14.85926 -14.70884 -14.50068 -14.35729 -14.15178 -13.71536 -13.60613 -13.30041 -13.04813 -12.93914 -12.73040 -12.61082 -12.26345 -11.82541 -11.63815 -11.55410 -11.39586 -11.10267 -11.06562 -10.90577 -10.53158 -10.30577 -10.04963 -8.90278 -7.90888 -5.22393 -0.92995 -0.36216 1.35852 1.44745 1.46955 1.55895 1.72171 2.33291 2.42923 2.47866 2.72929 2.77985 2.90917 3.26051 3.34733 3.39583 3.42768 3.61070 3.65055 3.71937 3.80634 4.09565 4.13878 4.20726 4.34286 4.60175 4.63748 4.66680 4.75430 4.81386 4.88948 4.92343 4.97559 5.14844 5.21646 5.22224 5.36075 5.52012 5.93550 6.10352 6.17450 6.40937 6.92810 6.94887 7.60810 8.56583 9.26884 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002206 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.975122 B =12688.504280 C =13441.260339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.641 5.641 10 C 0.123 3.877 11 C 0.075 3.925 12 C 0.155 3.845 13 C -0.131 4.131 14 C 0.125 3.875 15 H 0.107 0.893 16 N -0.683 5.683 17 C 0.569 3.431 18 O -0.554 6.554 19 C 0.019 3.981 20 N -0.409 5.409 21 C 0.079 3.921 22 C 0.119 3.881 23 F -0.108 7.108 24 C -0.145 4.145 25 C 0.129 3.871 26 F -0.111 7.111 27 C 0.034 3.966 28 O -0.367 6.367 29 H 0.248 0.752 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.423 0.577 37 H 0.218 0.782 38 H 0.194 0.806 39 H 0.063 0.937 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.817 -23.563 -1.198 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.368 5.368 10 C -0.002 4.002 11 C 0.034 3.966 12 C 0.029 3.971 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.125 0.875 16 N -0.335 5.335 17 C 0.355 3.645 18 O -0.431 6.431 19 C -0.119 4.119 20 N -0.119 5.119 21 C -0.085 4.085 22 C 0.096 3.904 23 F -0.087 7.087 24 C -0.171 4.171 25 C 0.106 3.894 26 F -0.089 7.089 27 C -0.043 4.043 28 O -0.285 6.285 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.261 0.739 37 H 0.235 0.765 38 H 0.211 0.789 39 H 0.081 0.919 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.693 -22.807 -0.870 27.698 hybrid contribution -0.331 0.479 0.359 0.684 sum -16.024 -22.329 -0.510 27.488 Atomic orbital electron populations 1.70009 1.06402 1.25571 1.58113 1.25652 0.96650 1.00858 1.02992 0.85058 0.77772 0.79119 0.77398 1.21057 1.22120 1.19426 1.19387 0.91182 0.83488 1.42145 0.90137 1.46191 1.03611 1.01873 1.85118 1.22945 0.95287 0.83605 0.98364 1.23426 0.97284 0.94353 0.81519 1.22563 0.87198 0.90221 0.97118 1.22979 1.02311 0.94428 0.97255 1.22474 0.84087 0.96404 0.95054 0.87483 1.45613 1.14637 1.25603 1.47658 1.17860 0.85683 0.80960 0.80025 1.90870 1.53720 1.59905 1.38621 1.21159 0.95725 0.94846 1.00155 1.67712 1.03282 1.29045 1.11877 1.23650 0.92329 0.93370 0.99109 1.18746 0.80651 0.94540 0.96438 1.91629 1.35625 1.88706 1.92708 1.21905 0.90909 1.03763 1.00564 1.18474 0.88466 0.91321 0.91120 1.91638 1.68773 1.79517 1.69009 1.24051 0.89715 0.91183 0.99391 1.88853 1.46916 1.70688 1.22006 0.94274 0.93109 0.90472 0.94168 0.94905 0.87944 0.87009 0.73851 0.76544 0.78891 0.91922 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 11.51 21.65 0.25 -58.58 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.98 47.08 29.56 68.60 2.03 49.10 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.23 -13.70 10.69 84.03 0.90 -12.80 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.64 -34.26 3.70 -733.78 -2.72 -36.97 16 10 C 0.12 5.02 8.34 86.22 0.72 5.74 16 11 C 0.08 2.83 1.53 -10.46 -0.02 2.82 16 12 C 0.15 7.41 6.81 86.21 0.59 8.00 16 13 C -0.13 -3.34 6.22 31.42 0.20 -3.15 16 14 C 0.13 3.16 3.51 46.37 0.16 3.33 16 15 H 0.11 2.82 7.55 -2.39 -0.02 2.80 16 16 N -0.68 -14.68 5.18 -438.82 -2.27 -16.95 16 17 C 0.57 13.75 7.80 86.80 0.68 14.43 16 18 O -0.55 -17.11 14.96 -3.88 -0.06 -17.17 16 19 C 0.02 0.35 6.75 41.88 0.28 0.64 16 20 N -0.41 -5.90 9.53 -184.61 -1.76 -7.66 16 21 C 0.08 0.66 11.17 84.94 0.95 1.61 16 22 C 0.12 0.96 7.35 22.57 0.17 1.13 16 23 F -0.11 -0.84 17.28 44.97 0.78 -0.07 16 24 C -0.14 -1.40 10.14 22.53 0.23 -1.17 16 25 C 0.13 2.18 7.31 22.75 0.17 2.35 16 26 F -0.11 -2.43 15.54 44.97 0.70 -1.74 16 27 C 0.03 1.06 7.42 72.68 0.54 1.60 16 28 O -0.37 -14.87 11.29 -148.98 -1.68 -16.55 16 29 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 32 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 33 H 0.03 1.82 7.38 -2.38 -0.02 1.80 16 34 H 0.10 2.29 7.52 -2.38 -0.02 2.27 16 35 H 0.11 2.36 7.93 -2.39 -0.02 2.34 16 36 H 0.42 7.53 7.73 -92.71 -0.72 6.82 16 37 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -77.93 351.38 1.68 -76.25 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.39 Total: 9.40 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 6.02 Total: 20.94 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.50 Total: -120.16 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.74 Total: -33.72 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 1.48 Total: -1.80 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -77.93 1.68 -76.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688157465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.130 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds