Wall clock time and date at job start Tue Mar 31 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00136 * 2 1 4 4 H 1.48505 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47336 * 299.99730 * 3 2 1 6 6 H 1.48501 * 109.47405 * 59.99862 * 3 2 1 7 7 C 1.38813 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99889 * 198.61120 * 7 2 1 9 9 N 1.36932 * 120.00120 * 18.60951 * 7 2 1 10 10 C 1.47219 * 135.96673 * 8.25026 * 9 7 2 11 11 C 1.52951 * 87.66912 * 153.64056 * 10 9 7 12 12 C 1.47225 * 135.96623 * 188.61611 * 9 7 2 13 13 C 1.53319 * 115.75815 * 270.15519 * 11 10 9 14 14 C 1.55032 * 103.78779 * 229.61257 * 13 11 10 15 15 H 1.08993 * 110.86717 * 139.22845 * 14 13 11 16 16 N 1.46494 * 110.87056 * 262.70468 * 14 13 11 17 17 C 1.34779 * 119.99673 * 204.99420 * 16 14 13 18 18 O 1.21545 * 120.00106 * 0.02562 * 17 16 14 19 19 C 1.47883 * 119.99884 * 179.97438 * 17 16 14 20 20 N 1.32845 * 119.72247 * 359.73574 * 19 17 16 21 21 C 1.31368 * 121.68901 * 179.74909 * 20 19 17 22 22 C 1.38997 * 120.93342 * 0.52561 * 21 20 19 23 23 F 1.35096 * 120.33169 * 179.72158 * 22 21 20 24 24 C 1.38722 * 119.34286 * 359.73809 * 22 21 20 25 25 C 1.38835 * 118.44787 * 0.02562 * 24 22 21 26 26 F 1.35102 * 120.48616 * 179.97438 * 25 24 22 27 27 C 1.55065 * 102.12660 * 20.86438 * 14 13 11 28 28 O 1.42840 * 115.80379 * 141.75526 * 11 10 9 29 29 H 0.96999 * 120.00505 * 185.69237 * 1 2 3 30 30 H 1.09004 * 113.50062 * 268.31271 * 10 9 7 31 31 H 1.08994 * 113.49940 * 38.85704 * 10 9 7 32 32 H 1.08996 * 113.50155 * 321.14488 * 12 9 7 33 33 H 1.08998 * 113.49829 * 91.62588 * 12 9 7 34 34 H 1.08999 * 110.56736 * 348.19139 * 13 11 10 35 35 H 1.09006 * 110.56047 * 111.03965 * 13 11 10 36 36 H 0.97001 * 120.00152 * 25.00267 * 16 14 13 37 37 H 1.07996 * 119.53274 * 180.26398 * 21 20 19 38 38 H 1.08002 * 120.77665 * 179.97438 * 24 22 21 39 39 H 1.08998 * 110.58726 * 82.02722 * 27 14 13 40 40 H 1.09000 * 110.58483 * 204.93337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0479 -1.2266 0.2991 9 7 1.3792 -2.3572 -0.3774 10 6 0.0779 -2.7071 -0.9705 11 6 0.7447 -3.9605 -1.5394 12 6 1.7024 -3.7935 -0.3625 13 6 1.3725 -3.8085 -2.9299 14 6 0.8098 -5.0157 -3.7233 15 1 0.5444 -4.7230 -4.7391 16 7 1.7674 -6.1243 -3.7355 17 6 1.7343 -7.0324 -4.7308 18 8 0.9102 -6.9314 -5.6185 19 6 2.7013 -8.1512 -4.7434 20 7 3.6037 -8.2528 -3.7738 21 6 4.4775 -9.2332 -3.7442 22 6 4.4976 -10.2026 -4.7402 23 9 5.4052 -11.2025 -4.7008 24 6 3.5767 -10.1330 -5.7753 25 6 2.6621 -9.0885 -5.7777 26 9 1.7474 -8.9807 -6.7661 27 6 -0.4527 -5.3852 -2.9023 28 8 -0.0524 -5.1458 -1.5336 29 1 -0.4851 -0.8359 0.0833 30 1 -0.6931 -2.9226 -0.2307 31 1 -0.2543 -2.0045 -1.7347 32 1 2.7411 -4.0079 -0.6135 33 1 1.3732 -4.3037 0.5427 34 1 1.0622 -2.8701 -3.3896 35 1 2.4593 -3.8645 -2.8674 36 1 2.4252 -6.2048 -3.0271 37 1 5.1930 -9.2844 -2.9370 38 1 3.5718 -10.8737 -6.5613 39 1 -1.2892 -4.7418 -3.1751 40 1 -0.7113 -6.4340 -3.0482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688157466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:21 Heat of formation + Delta-G solvation = -58.562338 kcal Electronic energy + Delta-G solvation = -28931.132513 eV Core-core repulsion = 24384.762664 eV Total energy + Delta-G solvation = -4546.369849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.78794 -49.52367 -41.03363 -40.24303 -39.00115 -36.62762 -34.55830 -33.13546 -32.30907 -31.76663 -30.23025 -28.00905 -25.89542 -25.51986 -24.86097 -24.43715 -22.37199 -21.90098 -20.80886 -18.97806 -18.91552 -18.79150 -18.36888 -17.46674 -16.92925 -16.68676 -16.49070 -16.01503 -15.85572 -15.42977 -15.20992 -15.07623 -14.71281 -14.66594 -14.13902 -13.97849 -13.85637 -13.78968 -13.58955 -13.22544 -13.08136 -12.75822 -12.28757 -11.56929 -11.44599 -11.23066 -11.12476 -10.97138 -10.79014 -10.68605 -10.55995 -10.21383 -10.13815 -10.07317 -9.63516 -9.54886 -9.30272 -8.81646 -8.66611 -7.08362 -6.15806 -3.19126 -0.29399 0.16929 2.12476 2.61439 3.02597 3.06128 3.32849 3.47074 3.47510 3.52337 3.63321 3.86722 4.00518 4.10292 4.37597 4.51276 4.58781 4.74868 4.89829 4.92438 5.00194 5.05006 5.10159 5.18058 5.40548 5.46445 5.67080 5.74999 5.77792 5.98103 6.12649 6.27009 6.34781 6.41915 6.44527 6.61626 6.71259 6.77404 7.20761 7.28398 7.41643 7.87420 8.26683 8.87124 9.71582 10.44032 11.25146 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002443 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.442637 B =11459.998824 C =12106.281862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 1.081 2.919 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.315 4.315 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.052 3.948 12 C 0.129 3.871 13 C -0.115 4.115 14 C 0.106 3.894 15 H 0.110 0.890 16 N -0.688 5.688 17 C 0.570 3.430 18 O -0.521 6.521 19 C 0.038 3.962 20 N -0.398 5.398 21 C 0.068 3.932 22 C 0.105 3.895 23 F -0.114 7.114 24 C -0.158 4.158 25 C 0.144 3.856 26 F -0.094 7.094 27 C 0.040 3.960 28 O -0.359 6.359 29 H 0.267 0.733 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.415 0.585 37 H 0.186 0.814 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.165 -21.893 -11.915 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.232 4.232 3 Si 0.911 3.089 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.441 4.441 8 H 0.094 0.906 9 N -0.337 5.337 10 C -0.002 4.002 11 C 0.011 3.989 12 C 0.002 3.998 13 C -0.153 4.153 14 C 0.001 3.999 15 H 0.128 0.872 16 N -0.339 5.339 17 C 0.354 3.646 18 O -0.397 6.397 19 C -0.102 4.102 20 N -0.108 5.108 21 C -0.094 4.094 22 C 0.083 3.917 23 F -0.093 7.093 24 C -0.185 4.185 25 C 0.121 3.879 26 F -0.072 7.072 27 C -0.038 4.038 28 O -0.277 6.277 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.203 0.797 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.455 -19.402 -11.747 23.875 hybrid contribution 0.523 -2.571 -0.330 2.644 sum 7.977 -21.973 -12.076 26.311 Atomic orbital electron populations 1.70696 1.06353 1.30236 1.50098 1.25856 0.96861 1.00867 0.99616 0.83271 0.73856 0.75019 0.76771 1.21822 1.21609 1.22023 1.19805 0.94616 0.84224 1.45462 0.90551 1.45645 1.15257 1.00146 1.72673 1.22666 0.90403 0.91619 0.95532 1.23722 0.93623 0.86107 0.95456 1.22389 0.96006 0.87057 0.94331 1.22693 1.01812 0.97379 0.93456 1.22740 0.89547 0.86070 1.01564 0.87188 1.45767 1.35798 1.25928 1.26427 1.17501 0.83037 0.81466 0.82634 1.90878 1.37517 1.74429 1.36841 1.21527 0.98204 0.97612 0.92813 1.67730 1.01198 1.20514 1.21360 1.23124 0.98342 0.89521 0.98425 1.18777 0.89034 0.87876 0.96015 1.91600 1.63865 1.57828 1.95961 1.21706 0.95554 1.00194 1.01081 1.18305 0.88454 0.94276 0.86838 1.91680 1.62742 1.95073 1.57699 1.23925 0.95693 1.01775 0.82404 1.88779 1.69384 1.44044 1.25458 0.92121 0.94195 0.92779 0.93430 0.94249 0.88492 0.89423 0.74845 0.79712 0.81343 0.90894 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.34 55.49 0.74 -27.81 16 2 C -0.03 -0.92 5.45 -17.43 -0.09 -1.01 16 3 Si 1.08 25.34 29.96 -169.99 -5.09 20.25 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.31 -8.82 10.65 -15.06 -0.16 -8.98 16 8 H 0.08 2.10 7.90 -52.48 -0.41 1.68 16 9 N -0.61 -15.42 3.65 -184.60 -0.67 -16.09 16 10 C 0.12 2.86 5.68 -7.88 -0.04 2.81 16 11 C 0.05 0.96 1.66 -90.66 -0.15 0.81 16 12 C 0.13 2.66 8.20 -8.03 -0.07 2.59 16 13 C -0.12 -1.79 6.11 -25.49 -0.16 -1.95 16 14 C 0.11 1.42 3.51 -65.77 -0.23 1.19 16 15 H 0.11 1.44 7.54 -51.93 -0.39 1.05 16 16 N -0.69 -8.54 5.14 -52.65 -0.27 -8.82 16 17 C 0.57 7.36 7.80 -12.31 -0.10 7.27 16 18 O -0.52 -8.07 14.95 5.33 0.08 -8.00 16 19 C 0.04 0.40 6.75 -82.96 -0.56 -0.16 16 20 N -0.40 -3.64 9.53 -9.70 -0.09 -3.73 16 21 C 0.07 0.44 11.17 -17.47 -0.20 0.25 16 22 C 0.11 0.64 7.35 -39.12 -0.29 0.36 16 23 F -0.11 -0.69 17.28 2.25 0.04 -0.65 16 24 C -0.16 -1.02 10.14 -39.18 -0.40 -1.41 16 25 C 0.14 1.35 7.31 -38.84 -0.28 1.07 16 26 F -0.09 -1.05 15.54 2.25 0.04 -1.02 16 27 C 0.04 0.57 7.42 38.25 0.28 0.85 16 28 O -0.36 -6.24 11.32 -35.23 -0.40 -6.64 16 29 H 0.27 8.17 5.92 -40.82 -0.24 7.93 16 30 H 0.04 0.97 7.96 -51.93 -0.41 0.56 16 31 H 0.05 1.31 7.79 -51.93 -0.40 0.91 16 32 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.57 7.82 -51.93 -0.41 1.17 16 35 H 0.09 1.31 7.70 -51.93 -0.40 0.91 16 36 H 0.41 4.85 7.95 -40.82 -0.32 4.53 16 37 H 0.19 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -33.73 350.26 -7.11 -40.84 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.32 Total: 2.71 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.44 Total: 3.67 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.30 Total: -56.44 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.32 Total: -14.63 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.07 Total: -1.67 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.73 -7.11 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688157466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.725 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds