Wall clock time and date at job start Tue Mar 31 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00136 * 2 1 4 4 H 1.48505 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47336 * 299.99730 * 3 2 1 6 6 H 1.48501 * 109.47405 * 59.99862 * 3 2 1 7 7 C 1.38813 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99889 * 198.61120 * 7 2 1 9 9 N 1.36932 * 120.00120 * 18.60951 * 7 2 1 10 10 C 1.47219 * 135.96673 * 8.25026 * 9 7 2 11 11 C 1.52951 * 87.66912 * 153.64056 * 10 9 7 12 12 C 1.47225 * 135.96623 * 188.61611 * 9 7 2 13 13 C 1.53319 * 115.75815 * 270.15519 * 11 10 9 14 14 C 1.55032 * 103.78779 * 229.61257 * 13 11 10 15 15 H 1.08993 * 110.86717 * 139.22845 * 14 13 11 16 16 N 1.46494 * 110.87056 * 262.70468 * 14 13 11 17 17 C 1.34779 * 119.99673 * 204.99420 * 16 14 13 18 18 O 1.21545 * 120.00106 * 0.02562 * 17 16 14 19 19 C 1.47883 * 119.99884 * 179.97438 * 17 16 14 20 20 N 1.32845 * 119.72247 * 359.73574 * 19 17 16 21 21 C 1.31368 * 121.68901 * 179.74909 * 20 19 17 22 22 C 1.38997 * 120.93342 * 0.52561 * 21 20 19 23 23 F 1.35096 * 120.33169 * 179.72158 * 22 21 20 24 24 C 1.38722 * 119.34286 * 359.73809 * 22 21 20 25 25 C 1.38835 * 118.44787 * 0.02562 * 24 22 21 26 26 F 1.35102 * 120.48616 * 179.97438 * 25 24 22 27 27 C 1.55065 * 102.12660 * 20.86438 * 14 13 11 28 28 O 1.42840 * 115.80379 * 141.75526 * 11 10 9 29 29 H 0.96999 * 120.00505 * 185.69237 * 1 2 3 30 30 H 1.09004 * 113.50062 * 268.31271 * 10 9 7 31 31 H 1.08994 * 113.49940 * 38.85704 * 10 9 7 32 32 H 1.08996 * 113.50155 * 321.14488 * 12 9 7 33 33 H 1.08998 * 113.49829 * 91.62588 * 12 9 7 34 34 H 1.08999 * 110.56736 * 348.19139 * 13 11 10 35 35 H 1.09006 * 110.56047 * 111.03965 * 13 11 10 36 36 H 0.97001 * 120.00152 * 25.00267 * 16 14 13 37 37 H 1.07996 * 119.53274 * 180.26398 * 21 20 19 38 38 H 1.08002 * 120.77665 * 179.97438 * 24 22 21 39 39 H 1.08998 * 110.58726 * 82.02722 * 27 14 13 40 40 H 1.09000 * 110.58483 * 204.93337 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0479 -1.2266 0.2991 9 7 1.3792 -2.3572 -0.3774 10 6 0.0779 -2.7071 -0.9705 11 6 0.7447 -3.9605 -1.5394 12 6 1.7024 -3.7935 -0.3625 13 6 1.3725 -3.8085 -2.9299 14 6 0.8098 -5.0157 -3.7233 15 1 0.5444 -4.7230 -4.7391 16 7 1.7674 -6.1243 -3.7355 17 6 1.7343 -7.0324 -4.7308 18 8 0.9102 -6.9314 -5.6185 19 6 2.7013 -8.1512 -4.7434 20 7 3.6037 -8.2528 -3.7738 21 6 4.4775 -9.2332 -3.7442 22 6 4.4976 -10.2026 -4.7402 23 9 5.4052 -11.2025 -4.7008 24 6 3.5767 -10.1330 -5.7753 25 6 2.6621 -9.0885 -5.7777 26 9 1.7474 -8.9807 -6.7661 27 6 -0.4527 -5.3852 -2.9023 28 8 -0.0524 -5.1458 -1.5336 29 1 -0.4851 -0.8359 0.0833 30 1 -0.6931 -2.9226 -0.2307 31 1 -0.2543 -2.0045 -1.7347 32 1 2.7411 -4.0079 -0.6135 33 1 1.3732 -4.3037 0.5427 34 1 1.0622 -2.8701 -3.3896 35 1 2.4593 -3.8645 -2.8674 36 1 2.4252 -6.2048 -3.0271 37 1 5.1930 -9.2844 -2.9370 38 1 3.5718 -10.8737 -6.5613 39 1 -1.2892 -4.7418 -3.1751 40 1 -0.7113 -6.4340 -3.0482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688157466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:21 Heat of formation + Delta-G solvation = -82.743046 kcal Electronic energy + Delta-G solvation = -28932.181067 eV Core-core repulsion = 24384.762664 eV Total energy + Delta-G solvation = -4547.418403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.29224 -50.25423 -42.01559 -41.38960 -40.05506 -38.20177 -35.71192 -34.36100 -33.76493 -32.54209 -31.32948 -29.71915 -27.60492 -26.65255 -26.18100 -25.07317 -24.01085 -23.10215 -21.85667 -20.55738 -19.71283 -19.46266 -19.42245 -19.09206 -17.83638 -17.54295 -17.14637 -16.90761 -16.67582 -16.63064 -16.52698 -16.09823 -15.98638 -15.83425 -15.60210 -15.53668 -15.07269 -14.82499 -14.48072 -14.33964 -14.19103 -13.84891 -13.71622 -13.11355 -12.81675 -12.75096 -12.69808 -12.48725 -12.30104 -11.90066 -11.84513 -11.62173 -11.56847 -11.12121 -11.07483 -10.75947 -10.69733 -10.30857 -10.04354 -9.16308 -8.39670 -5.38569 -0.94686 -0.37808 1.33678 1.58543 1.68693 1.73231 1.82541 2.31046 2.41653 2.53257 2.71308 2.78001 2.82251 3.17199 3.27469 3.33499 3.38914 3.45418 3.48749 3.54258 3.78701 3.87638 4.17004 4.26166 4.31514 4.51121 4.58473 4.59102 4.61284 4.65176 4.71948 4.74827 4.80733 4.87296 4.96410 5.19847 5.25159 5.26791 5.93289 6.09814 6.10555 6.38723 6.65399 6.91032 7.57439 8.38092 9.03383 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.002443 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.442637 B =11459.998824 C =12106.281862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.090 4.090 3 Si 1.132 2.868 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.318 4.318 8 H 0.081 0.919 9 N -0.635 5.635 10 C 0.119 3.881 11 C 0.082 3.918 12 C 0.127 3.873 13 C -0.108 4.108 14 C 0.119 3.881 15 H 0.117 0.883 16 N -0.684 5.684 17 C 0.570 3.430 18 O -0.553 6.553 19 C 0.018 3.982 20 N -0.412 5.412 21 C 0.078 3.922 22 C 0.119 3.881 23 F -0.108 7.108 24 C -0.144 4.144 25 C 0.131 3.869 26 F -0.110 7.110 27 C 0.037 3.963 28 O -0.368 6.368 29 H 0.253 0.747 30 H 0.019 0.981 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.419 0.581 37 H 0.217 0.783 38 H 0.195 0.805 39 H 0.080 0.920 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -23.706 -12.618 28.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.283 4.283 3 Si 0.956 3.044 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.445 4.445 8 H 0.098 0.902 9 N -0.364 5.364 10 C -0.007 4.007 11 C 0.040 3.960 12 C 0.002 3.998 13 C -0.146 4.146 14 C 0.014 3.986 15 H 0.135 0.865 16 N -0.335 5.335 17 C 0.355 3.645 18 O -0.431 6.431 19 C -0.120 4.120 20 N -0.122 5.122 21 C -0.086 4.086 22 C 0.097 3.903 23 F -0.086 7.086 24 C -0.171 4.171 25 C 0.107 3.893 26 F -0.088 7.088 27 C -0.041 4.041 28 O -0.286 6.286 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.257 0.743 37 H 0.233 0.767 38 H 0.213 0.787 39 H 0.098 0.902 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.919 -21.265 -12.448 26.562 hybrid contribution -0.181 -2.200 -0.064 2.208 sum 9.738 -23.466 -12.512 28.320 Atomic orbital electron populations 1.70820 1.07610 1.29464 1.53215 1.27357 0.96866 1.04599 0.99501 0.82623 0.74145 0.71114 0.76564 1.18949 1.21442 1.21989 1.20163 0.94974 0.85453 1.43926 0.90153 1.45920 1.16139 1.01535 1.72842 1.22676 0.89641 0.93649 0.94739 1.23241 0.91999 0.84533 0.96183 1.22511 0.97885 0.84366 0.95069 1.22603 1.02273 0.98042 0.91687 1.22525 0.89127 0.85618 1.01313 0.86536 1.45686 1.35593 1.25587 1.26623 1.17834 0.82993 0.81767 0.81877 1.90854 1.38979 1.75339 1.37916 1.21180 0.98935 0.97625 0.94264 1.67717 1.01625 1.21702 1.21124 1.23639 0.97631 0.88382 0.98915 1.18732 0.88525 0.87553 0.95519 1.91628 1.63573 1.57555 1.95862 1.21909 0.94160 0.99418 1.01565 1.18454 0.89113 0.95175 0.86523 1.91637 1.63562 1.95287 1.58345 1.24123 0.96330 1.02759 0.80857 1.88767 1.69279 1.42906 1.27625 0.93668 0.96350 0.94859 0.90994 0.94633 0.89240 0.88290 0.74278 0.76684 0.78747 0.90174 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.94 13.34 21.65 0.29 -60.65 16 2 C -0.09 -5.22 5.45 84.86 0.46 -4.75 16 3 Si 1.13 51.05 29.96 68.60 2.06 53.10 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.32 -17.92 10.65 84.03 0.89 -17.02 16 8 H 0.08 4.36 7.90 -2.91 -0.02 4.33 16 9 N -0.64 -32.58 3.65 -739.07 -2.69 -35.27 16 10 C 0.12 5.68 5.68 83.50 0.47 6.16 16 11 C 0.08 2.99 1.66 -10.82 -0.02 2.97 16 12 C 0.13 5.18 8.20 83.40 0.68 5.86 16 13 C -0.11 -3.25 6.11 31.40 0.19 -3.06 16 14 C 0.12 3.07 3.51 46.40 0.16 3.23 16 15 H 0.12 2.94 7.54 -2.39 -0.02 2.92 16 16 N -0.68 -16.07 5.14 -438.76 -2.25 -18.32 16 17 C 0.57 14.27 7.80 86.80 0.68 14.94 16 18 O -0.55 -17.00 14.95 -3.86 -0.06 -17.05 16 19 C 0.02 0.35 6.75 41.88 0.28 0.63 16 20 N -0.41 -6.62 9.53 -184.61 -1.76 -8.38 16 21 C 0.08 0.75 11.17 84.94 0.95 1.70 16 22 C 0.12 1.06 7.35 22.57 0.17 1.23 16 23 F -0.11 -0.91 17.28 44.97 0.78 -0.13 16 24 C -0.14 -1.46 10.14 22.53 0.23 -1.23 16 25 C 0.13 2.27 7.31 22.75 0.17 2.44 16 26 F -0.11 -2.42 15.54 44.97 0.70 -1.72 16 27 C 0.04 1.01 7.42 72.69 0.54 1.54 16 28 O -0.37 -12.52 11.32 -148.98 -1.69 -14.21 16 29 H 0.25 16.17 5.92 -92.71 -0.55 15.62 16 30 H 0.02 0.96 7.96 -2.38 -0.02 0.94 16 31 H 0.03 1.69 7.79 -2.39 -0.02 1.67 16 32 H 0.07 2.59 7.91 -2.39 -0.02 2.57 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 2.88 7.82 -2.39 -0.02 2.86 16 35 H 0.10 2.78 7.70 -2.38 -0.02 2.76 16 36 H 0.42 9.07 7.95 -92.71 -0.74 8.33 16 37 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -74.64 350.26 1.83 -72.82 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.60 Total: 15.17 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.86 Total: 14.64 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.42 Total: -122.62 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.74 Total: -31.26 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 1.48 Total: -1.85 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.10 kcal Total: -74.64 1.83 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688157466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.924 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds