Wall clock time and date at job start Tue Mar 31 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47591 * 270.00248 * 3 2 1 5 5 H 1.48495 * 109.47177 * 30.00821 * 3 2 1 6 6 H 1.48502 * 109.46982 * 150.00222 * 3 2 1 7 7 C 1.38797 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00193 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99751 * 179.97438 * 7 2 1 10 10 C 1.81004 * 100.00230 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99969 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00198 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47215 * 179.72627 * 14 13 11 16 16 N 1.46501 * 109.46830 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00007 * 82.36593 * 16 15 14 18 18 O 1.21619 * 119.99779 * 182.45921 * 17 16 15 19 19 C 1.47233 * 120.00238 * 2.45262 * 17 16 15 20 20 C 1.37005 * 127.18437 * 170.30028 * 19 17 16 21 21 N 1.33324 * 106.36832 * 180.02562 * 20 19 17 22 22 N 1.28520 * 109.43856 * 0.02562 * 21 20 19 23 23 N 1.28716 * 110.63842 * 359.71407 * 22 21 20 24 24 H 0.96997 * 126.03763 * 180.30322 * 23 22 21 25 25 C 1.46502 * 119.99620 * 262.36147 * 16 15 14 26 26 C 1.52997 * 117.49795 * 196.73863 * 25 16 15 27 27 C 1.53001 * 117.49859 * 128.07927 * 25 16 15 28 28 H 0.96997 * 119.99641 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46659 * 59.99752 * 10 9 7 30 30 H 1.09001 * 109.46908 * 300.00278 * 10 9 7 31 31 H 0.97004 * 119.99496 * 359.72695 * 13 11 10 32 32 H 1.09004 * 109.47264 * 299.72861 * 14 13 11 33 33 H 1.09004 * 109.46599 * 59.72749 * 14 13 11 34 34 H 1.08999 * 109.46799 * 300.00049 * 15 14 13 35 35 H 1.08998 * 109.47083 * 59.99808 * 15 14 13 36 36 H 1.07999 * 126.81905 * 0.02562 * 20 19 17 37 37 H 1.08999 * 115.54867 * 342.40597 * 25 16 15 38 38 H 1.08999 * 117.49813 * 0.02562 * 26 25 16 39 39 H 1.08999 * 117.50022 * 145.01927 * 26 25 16 40 40 H 1.08998 * 117.49654 * 214.97805 * 27 25 16 41 41 H 1.08998 * 117.50084 * 359.97334 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0008 12 8 6.3441 -2.2962 -0.0005 13 7 6.0458 -4.4947 -0.0001 14 6 7.4908 -4.7357 -0.0006 15 6 7.7565 -6.2424 0.0073 16 7 9.2016 -6.4834 0.0075 17 6 9.8927 -6.4351 1.1635 18 8 11.0989 -6.5908 1.1579 19 6 9.1876 -6.1937 2.4333 20 6 9.7023 -6.2964 3.6988 21 7 8.7097 -5.9891 4.5342 22 7 7.6516 -5.7143 3.8585 23 7 7.8806 -5.8150 2.5959 24 1 7.2407 -5.6534 1.8852 25 6 9.8953 -6.7770 -1.2490 26 6 11.2911 -7.3969 -1.1572 27 6 11.1284 -5.9371 -1.5881 28 1 -0.4849 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8906 30 1 3.6441 -3.4314 0.8893 31 1 5.4291 -5.2434 0.0044 32 1 7.9327 -4.2935 -0.8935 33 1 7.9348 -4.2838 0.8865 34 1 7.3147 -6.6846 0.9003 35 1 7.3125 -6.6943 -0.8796 36 1 10.7117 -6.5716 3.9666 37 1 9.2581 -7.0920 -2.0753 38 1 11.6930 -7.5867 -0.1620 39 1 11.5723 -8.1194 -1.9234 40 1 11.3026 -5.6999 -2.6376 41 1 11.4232 -5.1658 -0.8766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688479617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:32 Heat of formation + Delta-G solvation = 98.301644 kcal Electronic energy + Delta-G solvation = -26628.699783 eV Core-core repulsion = 22675.265204 eV Total energy + Delta-G solvation = -3953.434579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.93831 -41.02282 -39.66334 -37.38291 -36.51101 -34.36095 -33.61240 -32.51239 -31.67600 -30.63706 -28.44572 -25.71622 -25.49897 -23.96876 -23.71503 -22.78388 -22.55860 -21.21602 -20.86003 -18.58955 -18.09557 -17.78489 -17.03660 -16.80884 -16.53193 -16.38587 -15.83192 -15.61022 -15.31203 -15.02548 -14.93614 -14.49953 -14.18391 -13.98102 -13.69525 -13.48152 -13.20094 -12.86515 -12.78007 -12.56814 -12.10111 -11.91969 -11.74956 -11.60358 -11.34777 -11.14217 -11.07202 -10.87071 -10.72831 -10.34274 -9.97865 -9.95399 -9.83594 -9.49364 -9.22811 -9.07330 -8.61402 -7.02275 -6.36058 -4.09350 0.36589 1.70921 1.84359 2.08218 2.37824 2.57797 2.66060 3.05291 3.27285 3.37645 3.44540 3.47039 3.52578 3.72843 3.89897 4.04341 4.26110 4.31269 4.34260 4.45168 4.52891 4.55989 4.59683 4.72824 4.79560 4.97377 5.02982 5.04400 5.30886 5.34760 5.51323 5.53741 5.58651 5.79894 5.83313 5.99380 6.02965 6.06387 6.40688 7.15291 7.27335 7.84086 7.86786 8.13928 8.33945 9.09782 10.73050 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002521 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.249437 B =11105.835532 C =12066.624557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.508 6.508 13 N -0.745 5.745 14 C 0.079 3.921 15 C 0.079 3.921 16 N -0.575 5.575 17 C 0.602 3.398 18 O -0.499 6.499 19 C -0.080 4.080 20 C 0.040 3.960 21 N -0.268 5.268 22 N -0.038 5.038 23 N -0.383 5.383 24 H 0.453 0.547 25 C 0.064 3.936 26 C -0.188 4.188 27 C -0.183 4.183 28 H 0.272 0.728 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.403 0.597 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.206 0.794 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.636 -19.605 -2.123 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.087 5.913 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.380 6.380 13 N -0.403 5.403 14 C -0.046 4.046 15 C -0.046 4.046 16 N -0.306 5.306 17 C 0.388 3.612 18 O -0.373 6.373 19 C -0.214 4.214 20 C -0.120 4.120 21 N -0.133 5.133 22 N -0.020 5.020 23 N -0.120 5.120 24 H 0.311 0.689 25 C -0.039 4.039 26 C -0.225 4.225 27 C -0.221 4.221 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.238 0.762 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.223 0.777 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.442 -17.695 -0.976 27.055 hybrid contribution -0.939 -0.711 -1.389 1.821 sum 19.503 -18.406 -2.365 26.921 Atomic orbital electron populations 1.69932 1.05902 1.27873 1.47740 1.24710 0.94462 0.98982 0.93100 0.86745 0.81897 0.83324 0.79947 1.19179 1.19824 1.15953 1.22279 0.88033 0.97589 1.59165 0.89281 1.84863 1.09605 0.99381 1.97454 1.23287 0.93096 1.05046 1.06166 1.20413 0.90968 0.81748 0.74865 1.90745 1.58758 1.41954 1.46567 1.45955 1.06141 1.08967 1.79236 1.21980 0.83267 0.94615 1.04786 1.22176 0.81363 0.95879 1.05187 1.47011 1.07435 1.69478 1.06663 1.16872 0.86272 0.76916 0.81099 1.90716 1.12370 1.48839 1.85353 1.22319 0.86494 1.14532 0.98021 1.23972 1.01123 1.00058 0.86831 1.75065 0.96267 1.15056 1.26895 1.78306 1.20702 1.15386 0.87590 1.47074 1.10479 1.44987 1.09465 0.68938 1.21858 0.89296 1.06522 0.86231 1.23950 0.96627 0.95936 1.06023 1.23329 1.00784 0.95452 1.02538 0.91842 0.88109 0.88082 0.76205 0.88818 0.91298 0.90201 0.86511 0.77699 0.84483 0.84317 0.88697 0.87997 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.97 55.49 0.78 -25.16 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.31 27.74 -169.99 -4.71 16.59 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 7 C -0.52 -14.53 10.04 30.94 0.31 -14.22 16 8 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 9 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 10 C -0.13 -2.16 6.16 36.00 0.22 -1.93 16 11 C 0.53 8.10 7.85 -10.99 -0.09 8.02 16 12 O -0.51 -9.95 15.86 5.55 0.09 -9.86 16 13 N -0.75 -6.71 5.38 -60.29 -0.32 -7.03 16 14 C 0.08 0.63 4.77 -4.04 -0.02 0.61 16 15 C 0.08 0.37 5.10 -4.04 -0.02 0.35 16 16 N -0.57 -3.78 2.86 -167.44 -0.48 -4.26 16 17 C 0.60 5.33 7.39 -12.61 -0.09 5.24 16 18 O -0.50 -5.27 12.70 5.26 0.07 -5.21 16 19 C -0.08 -0.74 6.53 -82.33 -0.54 -1.28 16 20 C 0.04 0.39 11.88 -17.35 -0.21 0.18 16 21 N -0.27 -3.25 12.35 30.47 0.38 -2.87 16 22 N -0.04 -0.46 13.35 60.35 0.81 0.35 16 23 N -0.38 -3.59 5.24 33.31 0.17 -3.42 16 24 H 0.45 3.45 3.60 -190.33 -0.68 2.76 16 25 C 0.06 0.37 6.61 -67.93 -0.45 -0.07 16 26 C -0.19 -1.26 9.63 -26.69 -0.26 -1.51 16 27 C -0.18 -1.26 9.88 -26.69 -0.26 -1.53 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 30 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.40 2.14 8.47 -40.82 -0.35 1.79 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16 34 H 0.08 0.32 5.09 -51.93 -0.26 0.06 16 35 H 0.12 0.23 7.93 -51.93 -0.41 -0.18 16 36 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.14 0.46 8.03 -51.93 -0.42 0.04 16 38 H 0.14 1.23 5.12 -52.54 -0.27 0.96 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.89 7.67 -51.93 -0.40 0.49 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -36.09 357.81 -6.57 -42.66 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.24 Total: 1.65 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.50 Total: -3.50 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 1.33 Total: -42.38 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.15 Total: -15.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.09 -6.57 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688479617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.963 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds