Wall clock time and date at job start Tue Mar 31 2020 22:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47591 * 270.00248 * 3 2 1 5 5 H 1.48495 * 109.47177 * 30.00821 * 3 2 1 6 6 H 1.48502 * 109.46982 * 150.00222 * 3 2 1 7 7 C 1.38797 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00193 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99751 * 179.97438 * 7 2 1 10 10 C 1.81004 * 100.00230 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99969 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99971 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00198 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47215 * 179.72627 * 14 13 11 16 16 N 1.46501 * 109.46830 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00007 * 82.36593 * 16 15 14 18 18 O 1.21619 * 119.99779 * 182.45921 * 17 16 15 19 19 C 1.47233 * 120.00238 * 2.45262 * 17 16 15 20 20 C 1.37005 * 127.18437 * 170.30028 * 19 17 16 21 21 N 1.33324 * 106.36832 * 180.02562 * 20 19 17 22 22 N 1.28520 * 109.43856 * 0.02562 * 21 20 19 23 23 N 1.28716 * 110.63842 * 359.71407 * 22 21 20 24 24 H 0.96997 * 126.03763 * 180.30322 * 23 22 21 25 25 C 1.46502 * 119.99620 * 262.36147 * 16 15 14 26 26 C 1.52997 * 117.49795 * 196.73863 * 25 16 15 27 27 C 1.53001 * 117.49859 * 128.07927 * 25 16 15 28 28 H 0.96997 * 119.99641 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46659 * 59.99752 * 10 9 7 30 30 H 1.09001 * 109.46908 * 300.00278 * 10 9 7 31 31 H 0.97004 * 119.99496 * 359.72695 * 13 11 10 32 32 H 1.09004 * 109.47264 * 299.72861 * 14 13 11 33 33 H 1.09004 * 109.46599 * 59.72749 * 14 13 11 34 34 H 1.08999 * 109.46799 * 300.00049 * 15 14 13 35 35 H 1.08998 * 109.47083 * 59.99808 * 15 14 13 36 36 H 1.07999 * 126.81905 * 0.02562 * 20 19 17 37 37 H 1.08999 * 115.54867 * 342.40597 * 25 16 15 38 38 H 1.08999 * 117.49813 * 0.02562 * 26 25 16 39 39 H 1.08999 * 117.50022 * 145.01927 * 26 25 16 40 40 H 1.08998 * 117.49654 * 214.97805 * 27 25 16 41 41 H 1.08998 * 117.50084 * 359.97334 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2325 -0.0008 12 8 6.3441 -2.2962 -0.0005 13 7 6.0458 -4.4947 -0.0001 14 6 7.4908 -4.7357 -0.0006 15 6 7.7565 -6.2424 0.0073 16 7 9.2016 -6.4834 0.0075 17 6 9.8927 -6.4351 1.1635 18 8 11.0989 -6.5908 1.1579 19 6 9.1876 -6.1937 2.4333 20 6 9.7023 -6.2964 3.6988 21 7 8.7097 -5.9891 4.5342 22 7 7.6516 -5.7143 3.8585 23 7 7.8806 -5.8150 2.5959 24 1 7.2407 -5.6534 1.8852 25 6 9.8953 -6.7770 -1.2490 26 6 11.2911 -7.3969 -1.1572 27 6 11.1284 -5.9371 -1.5881 28 1 -0.4849 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8906 30 1 3.6441 -3.4314 0.8893 31 1 5.4291 -5.2434 0.0044 32 1 7.9327 -4.2935 -0.8935 33 1 7.9348 -4.2838 0.8865 34 1 7.3147 -6.6846 0.9003 35 1 7.3125 -6.6943 -0.8796 36 1 10.7117 -6.5716 3.9666 37 1 9.2581 -7.0920 -2.0753 38 1 11.6930 -7.5867 -0.1620 39 1 11.5723 -8.1194 -1.9234 40 1 11.3026 -5.6999 -2.6376 41 1 11.4232 -5.1658 -0.8766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688479617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:32 Heat of formation + Delta-G solvation = 70.195856 kcal Electronic energy + Delta-G solvation = -26629.918542 eV Core-core repulsion = 22675.265204 eV Total energy + Delta-G solvation = -3954.653337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72027 -41.66818 -40.78281 -38.11011 -37.15623 -35.28222 -34.67250 -34.35513 -32.44967 -31.74023 -29.39162 -27.84928 -26.20949 -24.72971 -24.38568 -23.30388 -23.22527 -22.15316 -21.68674 -20.00636 -19.20897 -18.54567 -17.97399 -17.65712 -17.42733 -17.33142 -17.07263 -16.77754 -16.25949 -16.12480 -15.77902 -15.66977 -15.07502 -15.00427 -14.90887 -14.80133 -14.08511 -13.88337 -13.73807 -13.37720 -13.35419 -13.07840 -12.98899 -12.69320 -12.48766 -12.44905 -12.20267 -11.92777 -11.88816 -11.34925 -11.18343 -11.17725 -11.01938 -10.71450 -10.53728 -10.42919 -9.79887 -9.00311 -8.52176 -6.22626 -0.38370 0.91365 1.03684 1.12476 1.29984 1.38479 1.44820 1.47730 1.57613 1.68776 2.10494 2.23675 2.68022 2.82561 2.86517 2.92351 3.24798 3.29781 3.40597 3.73080 3.77046 3.85595 3.90565 3.98303 4.04332 4.09581 4.23288 4.31182 4.46695 4.47990 4.61723 4.83153 4.86534 5.04056 5.09242 5.27347 5.33406 5.51399 5.70483 5.83014 6.11897 6.27633 6.62373 6.93610 7.02914 7.04862 8.59987 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.002521 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.249437 B =11105.835532 C =12066.624557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.238 1.238 7 C -0.525 4.525 8 H 0.066 0.934 9 S -0.182 6.182 10 C -0.113 4.113 11 C 0.540 3.460 12 O -0.557 6.557 13 N -0.713 5.713 14 C 0.081 3.919 15 C 0.083 3.917 16 N -0.569 5.569 17 C 0.599 3.401 18 O -0.519 6.519 19 C -0.075 4.075 20 C 0.034 3.966 21 N -0.292 5.292 22 N -0.066 5.066 23 N -0.370 5.370 24 H 0.459 0.541 25 C 0.071 3.929 26 C -0.192 4.192 27 C -0.194 4.194 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.426 0.574 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.227 0.773 37 H 0.175 0.825 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.374 -21.409 -3.525 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.162 1.162 7 C -0.673 4.673 8 H 0.085 0.915 9 S 0.045 5.955 10 C -0.263 4.263 11 C 0.326 3.674 12 O -0.434 6.434 13 N -0.371 5.371 14 C -0.045 4.045 15 C -0.041 4.041 16 N -0.298 5.298 17 C 0.385 3.615 18 O -0.394 6.394 19 C -0.210 4.210 20 C -0.125 4.125 21 N -0.157 5.157 22 N -0.048 5.048 23 N -0.108 5.108 24 H 0.318 0.682 25 C -0.031 4.031 26 C -0.230 4.230 27 C -0.232 4.232 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.265 0.735 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.192 0.808 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.147 -19.562 -2.385 28.906 hybrid contribution -1.077 -0.323 -0.986 1.496 sum 20.070 -19.885 -3.370 28.453 Atomic orbital electron populations 1.70011 1.07247 1.28963 1.49213 1.25534 0.95232 1.02162 0.93055 0.85904 0.80655 0.79892 0.80159 1.18671 1.18638 1.16218 1.22443 0.90119 0.96709 1.58011 0.91547 1.84826 1.06614 1.06484 1.97620 1.23285 0.95315 0.99550 1.08189 1.20002 0.89593 0.83065 0.74786 1.90741 1.59384 1.43937 1.49331 1.45516 1.07343 1.07568 1.76668 1.22039 0.81743 0.97006 1.03676 1.22305 0.80450 0.93456 1.07867 1.47064 1.08163 1.68317 1.06287 1.16910 0.86060 0.76962 0.81559 1.90737 1.13253 1.49776 1.85676 1.22485 0.86329 1.13807 0.98345 1.24404 1.01678 0.99652 0.86815 1.75025 0.96901 1.15899 1.27839 1.78256 1.21183 1.16793 0.88567 1.47061 1.10621 1.44140 1.08989 0.68194 1.22248 0.89449 1.05082 0.86353 1.23875 0.97590 0.96123 1.05363 1.23309 1.02253 0.94956 1.02720 0.91416 0.85873 0.86293 0.73483 0.89218 0.93428 0.89117 0.82158 0.75640 0.80751 0.86658 0.86752 0.86440 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.97 21.65 0.30 -54.36 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 44.15 27.74 68.60 1.90 46.05 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 7 C -0.53 -29.31 10.04 67.95 0.68 -28.63 16 8 H 0.07 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.68 18.55 -56.49 -1.05 -9.73 16 10 C -0.11 -3.64 6.16 71.23 0.44 -3.20 16 11 C 0.54 15.22 7.85 87.66 0.69 15.91 16 12 O -0.56 -21.31 15.86 -3.04 -0.05 -21.36 16 13 N -0.71 -10.44 5.38 -463.05 -2.49 -12.93 16 14 C 0.08 1.06 4.77 86.38 0.41 1.47 16 15 C 0.08 0.44 5.10 86.38 0.44 0.88 16 16 N -0.57 -5.80 2.86 -801.92 -2.29 -8.10 16 17 C 0.60 9.72 7.39 86.61 0.64 10.36 16 18 O -0.52 -10.69 12.70 -4.09 -0.05 -10.74 16 19 C -0.08 -1.31 6.53 40.41 0.26 -1.05 16 20 C 0.03 0.65 11.88 84.18 1.00 1.65 16 21 N -0.29 -7.02 12.35 -57.50 -0.71 -7.73 16 22 N -0.07 -1.56 13.35 37.02 0.49 -1.07 16 23 N -0.37 -6.42 5.24 -48.52 -0.25 -6.67 16 24 H 0.46 5.96 3.60 -219.90 -0.79 5.16 16 25 C 0.07 0.59 6.61 44.99 0.30 0.89 16 26 C -0.19 -2.18 9.63 30.62 0.29 -1.89 16 27 C -0.19 -2.35 9.88 30.62 0.30 -2.05 16 28 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.12 3.47 8.14 -2.40 -0.02 3.45 16 30 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.43 2.55 8.47 -92.71 -0.79 1.76 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.05 0.88 6.51 -2.39 -0.02 0.87 16 34 H 0.09 0.36 5.09 -2.39 -0.01 0.35 16 35 H 0.16 -0.40 7.93 -2.39 -0.02 -0.42 16 36 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.18 0.19 8.03 -2.39 -0.02 0.17 16 38 H 0.12 1.95 5.12 -12.11 -0.06 1.89 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 Total: -1.00 -81.82 357.81 1.17 -80.65 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.55 Total: 8.56 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.93 Total: -2.59 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -4.95 Total: -90.85 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.10 Total: -32.10 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -81.82 1.17 -80.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688479617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.846 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds