Wall clock time and date at job start Tue Mar 31 2020 22:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46500 * 114.26834 * 139.78985 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47154 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.47312 * 180.02562 * 20 19 17 22 22 C 1.34427 * 126.82185 * 124.99992 * 21 20 19 23 23 N 1.30830 * 108.07605 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.83242 * 0.02562 * 23 22 21 25 25 N 1.30720 * 108.93945 * 359.74894 * 24 23 22 26 26 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 27 27 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 29 29 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 30 30 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 31 31 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 32 32 H 1.09001 * 114.39331 * 272.67753 * 15 14 13 33 33 H 0.97001 * 119.99661 * 291.47422 * 16 15 14 34 34 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 35 35 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 36 36 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 37 37 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 38 38 H 1.08003 * 125.96185 * 359.97438 * 22 21 20 39 39 H 1.07991 * 125.52796 * 179.97438 * 24 23 22 40 40 H 1.09001 * 113.46952 * 321.86856 * 26 13 11 41 41 H 1.09004 * 113.46955 * 92.25117 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 7 8.7228 -11.9667 1.1046 22 6 10.0664 -11.9526 1.0662 23 7 10.4703 -13.0934 0.5690 24 6 9.4182 -13.8579 0.2790 25 7 8.3256 -13.2132 0.5940 26 6 2.7297 -7.8092 -0.0165 27 1 -0.4851 0.8400 -0.0004 28 1 3.1212 -3.7293 -0.8992 29 1 3.1279 -3.7332 0.8807 30 1 4.7224 -6.6035 -1.0299 31 1 4.8324 -5.7788 0.5838 32 1 4.0523 -7.8025 1.7636 33 1 4.8572 -9.2891 -0.7020 34 1 6.2430 -11.3993 0.2412 35 1 7.3799 -10.1844 -0.3910 36 1 8.4474 -10.0227 1.8416 37 1 7.3102 -11.2377 2.4732 38 1 10.7017 -11.1412 1.3893 39 1 9.4614 -14.8505 -0.1440 40 1 1.9144 -8.1821 0.6034 41 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688592490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:28 Heat of formation + Delta-G solvation = 65.115378 kcal Electronic energy + Delta-G solvation = -24856.147792 eV Core-core repulsion = 20901.274149 eV Total energy + Delta-G solvation = -3954.873643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54356 -40.96081 -39.67310 -37.67968 -35.40513 -34.35434 -32.46718 -31.71165 -31.31207 -30.29333 -27.88706 -26.22684 -25.65172 -25.39654 -22.57766 -22.48539 -21.71245 -21.01206 -19.20148 -18.30832 -17.81142 -17.20140 -17.07601 -16.75506 -16.42579 -15.96341 -15.49315 -15.28285 -15.02092 -14.83663 -14.64303 -14.34545 -14.18156 -13.91415 -13.56814 -13.17233 -13.01127 -12.97455 -12.75996 -12.58684 -12.53883 -11.92109 -11.88758 -11.45601 -11.07861 -11.06535 -10.80877 -10.65365 -10.47130 -10.29239 -10.20221 -9.87853 -9.66822 -9.49656 -9.09602 -8.78209 -8.30143 -6.55552 -6.25099 -3.96761 1.11184 1.68922 1.99391 2.35194 2.49014 2.77626 3.01916 3.21129 3.22274 3.26619 3.50007 3.81226 3.85313 3.91433 4.02597 4.16477 4.18991 4.40405 4.46256 4.56593 4.66770 4.73601 4.80256 5.01754 5.08573 5.10090 5.10598 5.24617 5.36662 5.48857 5.49873 5.71648 5.79808 5.83846 5.91961 5.97095 6.07764 6.24896 6.84783 7.55670 7.57484 7.58804 7.68978 8.31302 8.40800 9.19953 10.82277 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.001568 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.538800 B =17852.393114 C =18698.952438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.145 4.145 11 C 0.567 3.433 12 O -0.509 6.509 13 N -0.650 5.650 14 C 0.088 3.912 15 C 0.109 3.891 16 N -0.714 5.714 17 C 0.524 3.476 18 O -0.534 6.534 19 C -0.153 4.153 20 C 0.145 3.855 21 N -0.381 5.381 22 C 0.258 3.742 23 N -0.549 5.549 24 C 0.199 3.801 25 N -0.321 5.321 26 C 0.097 3.903 27 H 0.270 0.730 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.406 0.594 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.086 0.914 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.454 -25.358 -0.557 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.295 4.295 11 C 0.357 3.643 12 O -0.382 6.382 13 N -0.389 5.389 14 C -0.038 4.038 15 C 0.003 3.997 16 N -0.366 5.366 17 C 0.309 3.691 18 O -0.411 6.411 19 C -0.194 4.194 20 C 0.023 3.977 21 N -0.172 5.172 22 C -0.039 4.039 23 N -0.276 5.276 24 C -0.104 4.104 25 N -0.148 5.148 26 C -0.027 4.027 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.152 0.848 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.104 0.896 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.982 -25.324 0.158 30.491 hybrid contribution 1.978 1.347 -0.556 2.457 sum 18.960 -23.977 -0.397 30.570 Atomic orbital electron populations 1.70002 1.05963 1.27649 1.46609 1.24988 0.95033 0.99027 0.94432 0.86213 0.79241 0.81168 0.78819 1.19934 1.20754 1.19896 1.22812 0.94880 0.91537 1.59312 0.90927 1.85409 1.04706 0.96354 1.96749 1.23480 1.06657 0.94377 1.05006 1.19947 0.85148 0.84744 0.74507 1.90730 1.14696 1.84738 1.48054 1.49345 1.07727 1.05749 1.76123 1.23498 0.82775 0.96511 1.00967 1.22990 0.89544 0.86164 1.01051 1.45784 1.33758 1.38631 1.18402 1.20332 0.80686 0.82770 0.85278 1.90779 1.70410 1.60388 1.19483 1.21879 0.98141 0.99167 1.00223 1.21554 0.92242 0.87280 0.96657 1.50613 1.06501 1.12983 1.47082 1.26162 0.83545 0.97907 0.96308 1.70573 1.32274 1.03549 1.21174 1.26051 0.84912 1.00889 0.98535 1.78035 1.23969 0.92661 1.20175 1.23203 0.96976 0.81896 1.00635 0.92064 0.89228 0.89111 0.89600 0.89551 0.84755 0.75903 0.87081 0.87943 0.86911 0.88146 0.76355 0.76657 0.89551 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.14 -2.94 5.98 36.00 0.22 -2.72 16 11 C 0.57 10.73 8.10 -10.99 -0.09 10.65 16 12 O -0.51 -11.71 16.64 5.56 0.09 -11.62 16 13 N -0.65 -8.69 3.69 -185.06 -0.68 -9.37 16 14 C 0.09 0.79 8.25 -8.38 -0.07 0.73 16 15 C 0.11 0.84 4.62 -67.66 -0.31 0.53 16 16 N -0.71 -3.54 5.39 -53.47 -0.29 -3.83 16 17 C 0.52 3.17 7.83 -10.99 -0.09 3.09 16 18 O -0.53 -5.31 15.57 5.55 0.09 -5.22 16 19 C -0.15 -0.55 5.92 -27.88 -0.16 -0.71 16 20 C 0.14 0.61 5.84 -4.04 -0.02 0.58 16 21 N -0.38 -2.22 3.69 -62.63 -0.23 -2.45 16 22 C 0.26 1.37 12.63 -90.66 -1.14 0.23 16 23 N -0.55 -4.24 11.19 -15.83 -0.18 -4.42 16 24 C 0.20 1.38 13.03 -91.81 -1.20 0.18 16 25 N -0.32 -2.47 12.57 29.29 0.37 -2.11 16 26 C 0.10 0.91 8.38 -8.50 -0.07 0.83 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 30 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 1.27 7.45 -51.93 -0.39 0.88 16 33 H 0.41 0.92 8.76 -40.82 -0.36 0.56 16 34 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.11 0.30 8.04 -51.93 -0.42 -0.12 16 37 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.22 0.24 8.06 -52.48 -0.42 -0.18 16 39 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -39.65 378.68 -9.72 -49.37 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.35 Total: -3.69 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.74 Total: 0.48 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.28 Total: -47.43 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.65 -9.72 -49.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.487 kcal (2) G-P(sol) polarization free energy of solvation -39.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds