Wall clock time and date at job start Tue Mar 31 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46500 * 114.26834 * 139.78985 * 15 14 13 17 17 C 1.34767 * 119.99895 * 111.47154 * 16 15 14 18 18 O 1.21287 * 120.00399 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99869 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47286 * 180.02562 * 19 17 16 21 21 N 1.46500 * 109.47312 * 180.02562 * 20 19 17 22 22 C 1.34427 * 126.82185 * 124.99992 * 21 20 19 23 23 N 1.30830 * 108.07605 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.83242 * 0.02562 * 23 22 21 25 25 N 1.30720 * 108.93945 * 359.74894 * 24 23 22 26 26 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 27 27 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 29 29 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 30 30 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 31 31 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 32 32 H 1.09001 * 114.39331 * 272.67753 * 15 14 13 33 33 H 0.97001 * 119.99661 * 291.47422 * 16 15 14 34 34 H 1.08992 * 109.47297 * 300.00293 * 19 17 16 35 35 H 1.08998 * 109.47345 * 60.00964 * 19 17 16 36 36 H 1.09004 * 109.47092 * 300.00470 * 20 19 17 37 37 H 1.09004 * 109.47161 * 60.00103 * 20 19 17 38 38 H 1.08003 * 125.96185 * 359.97438 * 22 21 20 39 39 H 1.07991 * 125.52796 * 179.97438 * 24 23 22 40 40 H 1.09001 * 113.46952 * 321.86856 * 26 13 11 41 41 H 1.09004 * 113.46955 * 92.25117 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0270 15 6 4.0986 -7.8632 0.6762 16 7 4.9744 -8.9335 0.1928 17 6 5.9428 -9.4241 0.9914 18 8 6.0891 -8.9799 2.1105 19 6 6.8433 -10.5255 0.4943 20 6 7.8470 -10.8964 1.5880 21 7 8.7228 -11.9667 1.1046 22 6 10.0664 -11.9526 1.0662 23 7 10.4703 -13.0934 0.5690 24 6 9.4182 -13.8579 0.2790 25 7 8.3256 -13.2132 0.5940 26 6 2.7297 -7.8092 -0.0165 27 1 -0.4851 0.8400 -0.0004 28 1 3.1212 -3.7293 -0.8992 29 1 3.1279 -3.7332 0.8807 30 1 4.7224 -6.6035 -1.0299 31 1 4.8324 -5.7788 0.5838 32 1 4.0523 -7.8025 1.7636 33 1 4.8572 -9.2891 -0.7020 34 1 6.2430 -11.3993 0.2412 35 1 7.3799 -10.1844 -0.3910 36 1 8.4474 -10.0227 1.8416 37 1 7.3102 -11.2377 2.4732 38 1 10.7017 -11.1412 1.3893 39 1 9.4614 -14.8505 -0.1440 40 1 1.9144 -8.1821 0.6034 41 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688592490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:27 Heat of formation + Delta-G solvation = 36.594318 kcal Electronic energy + Delta-G solvation = -24857.384558 eV Core-core repulsion = 20901.274149 eV Total energy + Delta-G solvation = -3956.110409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.96302 -41.78359 -40.49802 -38.93016 -35.80880 -35.03620 -34.60644 -32.17773 -32.06512 -31.37183 -29.00559 -27.67943 -27.00155 -26.04147 -23.27398 -22.88455 -22.31412 -21.50922 -20.46414 -19.55619 -18.73238 -18.20071 -17.79153 -17.51915 -17.01280 -16.91380 -16.85756 -16.40721 -16.14313 -15.81192 -15.72724 -15.14516 -15.03611 -14.69854 -14.61864 -14.23928 -14.05288 -13.82225 -13.64778 -13.53171 -13.19976 -13.19315 -13.00797 -12.87759 -12.64297 -12.24845 -12.22944 -11.77819 -11.26182 -11.14655 -11.05787 -10.92855 -10.76585 -10.61516 -10.33266 -10.19296 -9.87171 -8.71034 -8.36358 -6.15860 0.70675 1.12917 1.31675 1.40951 1.43278 1.47948 1.50226 1.52689 1.80549 2.04575 2.25299 2.31307 2.97843 3.11419 3.26258 3.49686 3.54930 3.57747 3.63924 3.84019 3.88456 4.02229 4.16243 4.23357 4.23990 4.38630 4.40009 4.41905 4.51719 4.56917 4.71162 4.79101 4.80733 4.90738 5.31349 5.37062 5.39433 5.49827 5.91021 6.17526 6.39789 6.52232 7.01650 7.04575 7.14183 7.15624 8.72674 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.001568 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.538800 B =17852.393114 C =18698.952438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.119 4.119 11 C 0.565 3.435 12 O -0.564 6.564 13 N -0.651 5.651 14 C 0.086 3.914 15 C 0.128 3.872 16 N -0.699 5.699 17 C 0.528 3.472 18 O -0.574 6.574 19 C -0.139 4.139 20 C 0.143 3.857 21 N -0.382 5.382 22 C 0.261 3.739 23 N -0.582 5.582 24 C 0.192 3.808 25 N -0.349 5.349 26 C 0.096 3.904 27 H 0.272 0.728 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.423 0.577 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.257 0.743 39 H 0.237 0.763 40 H 0.076 0.924 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.518 -25.797 -1.387 34.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.270 4.270 11 C 0.354 3.646 12 O -0.442 6.442 13 N -0.388 5.388 14 C -0.037 4.037 15 C 0.021 3.979 16 N -0.351 5.351 17 C 0.315 3.685 18 O -0.453 6.453 19 C -0.179 4.179 20 C 0.021 3.979 21 N -0.173 5.173 22 C -0.035 4.035 23 N -0.310 5.310 24 C -0.111 4.111 25 N -0.177 5.177 26 C -0.027 4.027 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.262 0.738 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.253 0.747 40 H 0.095 0.905 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.101 -25.830 -0.700 32.737 hybrid contribution 1.129 1.304 -0.276 1.747 sum 21.229 -24.526 -0.976 32.452 Atomic orbital electron populations 1.70172 1.07991 1.28765 1.47746 1.26130 0.95964 1.03305 0.93580 0.84997 0.77820 0.75611 0.79529 1.18542 1.20315 1.18697 1.23161 0.95351 0.91880 1.59291 0.89886 1.85579 1.10308 0.99242 1.97062 1.23265 1.03541 0.93745 1.06462 1.19550 0.84903 0.85319 0.74808 1.90702 1.16924 1.85496 1.51110 1.49195 1.09516 1.06555 1.73533 1.23852 0.79915 0.96975 1.02965 1.22483 0.88985 0.86489 0.99933 1.45584 1.32823 1.37606 1.19136 1.20698 0.80555 0.82662 0.84568 1.90778 1.71490 1.61746 1.21272 1.21773 0.97579 0.98106 1.00489 1.21646 0.92543 0.87339 0.96343 1.50671 1.06935 1.12708 1.46967 1.26899 0.83672 0.98067 0.94841 1.70586 1.33062 1.04729 1.22576 1.26541 0.84643 1.01705 0.98165 1.77972 1.24773 0.93716 1.21258 1.23518 0.97586 0.79050 1.02563 0.91914 0.87388 0.87706 0.86426 0.89482 0.86421 0.73828 0.86799 0.85931 0.85150 0.89413 0.72778 0.74677 0.90508 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.55 -31.34 9.50 67.95 0.65 -30.70 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.12 -4.80 5.98 71.24 0.43 -4.38 16 11 C 0.56 21.39 8.10 87.66 0.71 22.10 16 12 O -0.56 -26.80 16.64 -3.02 -0.05 -26.85 16 13 N -0.65 -16.36 3.69 -857.80 -3.16 -19.52 16 14 C 0.09 1.30 8.25 83.26 0.69 1.99 16 15 C 0.13 1.66 4.62 45.56 0.21 1.88 16 16 N -0.70 -4.64 5.39 -441.48 -2.38 -7.02 16 17 C 0.53 5.03 7.83 87.66 0.69 5.72 16 18 O -0.57 -10.46 15.57 -3.05 -0.05 -10.51 16 19 C -0.14 -0.60 5.92 29.85 0.18 -0.43 16 20 C 0.14 0.91 5.84 86.38 0.50 1.41 16 21 N -0.38 -3.75 3.69 -352.05 -1.30 -5.05 16 22 C 0.26 2.24 12.63 180.36 2.28 4.51 16 23 N -0.58 -8.21 11.19 -204.01 -2.28 -10.50 16 24 C 0.19 2.47 13.03 180.76 2.36 4.82 16 25 N -0.35 -4.96 12.57 -61.25 -0.77 -5.73 16 26 C 0.10 1.57 8.38 83.18 0.70 2.27 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 2.06 7.45 -2.39 -0.02 2.04 16 33 H 0.42 0.13 8.76 -92.71 -0.81 -0.68 16 34 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.12 0.10 8.14 -2.39 -0.02 0.09 16 36 H 0.13 0.36 8.04 -2.39 -0.02 0.34 16 37 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 38 H 0.26 -0.21 8.06 -2.91 -0.02 -0.24 16 39 H 0.24 1.49 8.06 -2.92 -0.02 1.47 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -90.45 378.68 1.26 -89.19 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.26 Total: 5.21 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 9.84 Total: 10.53 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -9.61 Total: -103.35 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.10 Total: -37.36 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -90.45 1.26 -89.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688592490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.788 kcal (2) G-P(sol) polarization free energy of solvation -90.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds