Wall clock time and date at job start Tue Mar 31 2020 23:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.46149 * 2 1 4 4 C 1.54375 * 110.41652 * 237.58285 * 2 1 3 5 5 H 1.09006 * 110.32140 * 336.36817 * 4 2 1 6 6 N 1.46506 * 110.32544 * 98.47001 * 4 2 1 7 7 C 1.34776 * 120.00326 * 203.57467 * 6 4 2 8 8 O 1.21602 * 119.99850 * 0.02562 * 7 6 4 9 9 C 1.47445 * 120.00030 * 179.97438 * 7 6 4 10 10 C 1.37984 * 124.15292 * 180.02562 * 9 7 6 11 11 S 1.72104 * 104.03180 * 180.02562 * 10 9 7 12 12 N 1.56403 * 96.15276 * 0.02562 * 11 10 9 13 13 N 1.27413 * 109.87992 * 359.97438 * 12 11 10 14 14 C 1.54259 * 105.15532 * 217.42052 * 4 2 1 15 15 C 1.54380 * 105.05690 * 359.94572 * 14 4 2 16 16 N 1.48564 * 104.59526 * 23.85509 * 15 14 4 17 17 C 1.46897 * 110.99813 * 200.95707 * 16 15 14 18 18 C 1.50701 * 109.47220 * 293.84468 * 17 16 15 19 19 O 1.21289 * 119.99745 * 354.17952 * 18 17 16 20 20 N 1.34775 * 119.99881 * 174.17613 * 18 17 16 21 21 C 1.37096 * 120.00245 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99452 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00204 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00055 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46974 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47169 * 119.99987 * 25 23 21 28 28 H 1.48496 * 109.47564 * 240.00536 * 25 23 21 29 29 H 1.08993 * 109.47438 * 182.41331 * 1 2 3 30 30 H 1.09000 * 109.47585 * 302.42257 * 1 2 3 31 31 H 1.09003 * 109.47255 * 62.41427 * 1 2 3 32 32 H 0.97001 * 119.99901 * 23.58044 * 6 4 2 33 33 H 1.08000 * 127.98469 * 0.03292 * 10 9 7 34 34 H 1.09003 * 110.32294 * 118.83956 * 14 4 2 35 35 H 1.09000 * 110.32419 * 241.05038 * 14 4 2 36 36 H 1.08997 * 110.41000 * 142.62797 * 15 14 4 37 37 H 1.08993 * 110.41115 * 264.95472 * 15 14 4 38 38 H 1.08996 * 109.47103 * 53.84831 * 17 16 15 39 39 H 1.09008 * 109.46858 * 173.84632 * 17 16 15 40 40 H 0.97003 * 120.00294 * 0.02562 * 20 18 17 41 41 H 0.96998 * 119.99680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7756 -1.2213 5 1 1.3228 -1.4868 -1.5769 6 7 2.4356 0.1537 -2.2928 7 6 2.4704 -0.2716 -3.5712 8 8 2.1967 -1.4266 -3.8354 9 6 2.8394 0.6638 -4.6496 10 6 2.9019 0.3211 -5.9847 11 16 3.3751 1.7786 -6.7680 12 7 3.4562 2.6477 -5.4702 13 7 3.1534 1.9397 -4.4550 14 6 3.3173 -1.5208 -0.7071 15 6 3.4310 -1.1326 0.7827 16 7 2.0510 -0.7473 1.1755 17 6 2.0623 0.0997 2.3756 18 6 2.5567 -0.7022 3.5519 19 8 2.7683 -1.8902 3.4299 20 7 2.7638 -0.0991 4.7393 21 6 3.2131 -0.8287 5.8095 22 1 3.4014 -1.8866 5.7010 23 6 3.4270 -0.2069 7.0335 24 7 3.1983 1.0805 7.1654 25 14 4.0385 -1.2011 8.4919 26 1 4.2167 -2.6182 8.0852 27 1 5.3384 -0.6523 8.9551 28 1 3.0471 -1.1233 9.5948 29 1 -0.3634 -1.0267 0.0433 30 1 -0.3634 0.5510 0.8674 31 1 -0.3634 0.4759 -0.9108 32 1 2.6537 1.0751 -2.0821 33 1 2.7003 -0.6399 -6.4344 34 1 3.1840 -2.5979 -0.8086 35 1 4.2035 -1.1952 -1.2519 36 1 3.7703 -1.9840 1.3726 37 1 4.1121 -0.2906 0.9052 38 1 2.7229 0.9513 2.2130 39 1 1.0524 0.4567 2.5779 40 1 2.5942 0.8510 4.8369 41 1 3.3473 1.5144 8.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689308321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:47 Heat of formation + Delta-G solvation = 13.801131 kcal Electronic energy + Delta-G solvation = -26415.995043 eV Core-core repulsion = 22458.896247 eV Total energy + Delta-G solvation = -3957.098796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54514 -40.11022 -38.87729 -37.60332 -34.65097 -33.83142 -32.67029 -31.45807 -31.22638 -30.78520 -27.70438 -26.52341 -25.56937 -24.16048 -23.70289 -21.52929 -20.88524 -20.55956 -19.41791 -19.08561 -17.88240 -17.26765 -16.63234 -16.41168 -16.06536 -15.84844 -15.27702 -15.00661 -14.69740 -14.59691 -14.30203 -13.95267 -13.82448 -13.43794 -13.20467 -13.09988 -12.61739 -12.46565 -12.25152 -11.89281 -11.67555 -11.51663 -11.39314 -11.26685 -11.14610 -10.87440 -10.79580 -10.67296 -10.57556 -10.48087 -10.42135 -10.33658 -10.21774 -9.50018 -9.31780 -8.50271 -8.06468 -7.94048 -6.41126 -3.81763 -0.43470 0.41615 0.98991 1.03554 2.70534 2.75928 3.16814 3.27404 3.34470 3.36367 3.91430 4.01358 4.19386 4.25824 4.38191 4.50142 4.68288 4.85167 5.00781 5.16426 5.24643 5.25417 5.35802 5.43633 5.62289 5.68604 5.78636 5.89591 5.90934 5.92968 6.11297 6.21822 6.27856 6.32313 6.46578 6.88868 7.09679 7.15487 7.23027 7.56172 7.75229 8.07127 8.62490 9.19087 9.55206 10.07011 10.76758 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001960 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.590622 B =14284.101723 C =14559.569859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.056 0.944 4 C 0.144 3.856 5 H 0.106 0.894 6 N -0.701 5.701 7 C 0.605 3.395 8 O -0.521 6.521 9 C -0.022 4.022 10 C -0.236 4.236 11 S 0.463 5.537 12 N -0.288 5.288 13 N -0.210 5.210 14 C -0.133 4.133 15 C 0.037 3.963 16 N -0.476 5.476 17 C 0.035 3.965 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.409 0.591 33 H 0.210 0.790 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 4.235 -28.008 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 H 0.074 0.926 4 C 0.040 3.960 5 H 0.124 0.876 6 N -0.352 5.352 7 C 0.386 3.614 8 O -0.396 6.396 9 C -0.170 4.170 10 C -0.393 4.393 11 S 0.598 5.402 12 N -0.269 5.269 13 N -0.081 5.081 14 C -0.172 4.172 15 C -0.091 4.091 16 N -0.200 5.200 17 C -0.096 4.096 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.245 0.755 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.502 4.039 -28.350 28.676 hybrid contribution 0.413 0.137 1.480 1.543 sum -1.089 4.176 -26.870 27.215 Atomic orbital electron populations 1.21707 0.93063 1.03133 1.01441 1.22912 0.96856 0.95834 0.90254 0.92587 1.21905 0.97600 0.90999 0.85508 0.87628 1.46005 1.68373 1.15226 1.05586 1.16611 0.77720 0.85641 0.81433 1.90862 1.48873 1.17020 1.82853 1.22725 1.07230 0.92042 0.94963 1.28918 1.04897 1.08659 0.96809 1.81604 1.45722 0.93535 1.19299 1.78665 1.22376 1.26550 0.99286 1.71536 1.11297 1.03271 1.22007 1.22764 0.97022 1.01534 0.95856 1.23174 0.89549 1.01746 0.94629 1.65182 1.18955 1.35288 1.00598 1.22079 1.01956 0.94430 0.91184 1.19666 0.84803 0.88498 0.84052 1.90512 1.56218 1.15412 1.83843 1.41870 1.58388 1.11426 1.08529 1.19743 1.40201 0.94984 0.87719 0.87856 1.25261 0.97773 0.95934 0.99076 1.69622 1.49243 1.09227 1.26283 0.85805 0.78166 0.79814 0.80591 1.19214 1.20808 1.20763 0.91234 0.92096 0.92501 0.75478 0.77340 0.89960 0.91142 0.87822 0.94285 0.93338 0.89053 0.77528 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.31 37.15 0.35 -1.19 16 2 C 0.05 0.63 2.60 -65.99 -0.17 0.46 16 3 H 0.06 0.64 7.59 -51.93 -0.39 0.25 16 4 C 0.14 1.73 2.93 -66.55 -0.20 1.54 16 5 H 0.11 1.36 7.32 -51.93 -0.38 0.98 16 6 N -0.70 -7.37 5.03 -53.53 -0.27 -7.64 16 7 C 0.61 6.82 7.81 -12.51 -0.10 6.72 16 8 O -0.52 -7.17 16.47 5.28 0.09 -7.08 16 9 C -0.02 -0.21 6.87 -83.78 -0.58 -0.78 16 10 C -0.24 -1.51 11.21 30.64 0.34 -1.16 16 11 S 0.46 2.27 23.38 -107.50 -2.51 -0.24 16 12 N -0.29 -2.58 12.49 60.35 0.75 -1.83 16 13 N -0.21 -2.12 11.24 32.74 0.37 -1.75 16 14 C -0.13 -1.74 6.79 -25.35 -0.17 -1.91 16 15 C 0.04 0.59 5.73 -2.18 -0.01 0.57 16 16 N -0.48 -7.74 4.78 -223.44 -1.07 -8.81 16 17 C 0.04 0.62 5.24 -4.98 -0.03 0.60 16 18 C 0.44 10.42 7.47 -10.99 -0.08 10.34 16 19 O -0.58 -15.44 14.39 5.55 0.08 -15.36 16 20 N -0.57 -14.27 5.29 -10.97 -0.06 -14.33 16 21 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.69 7.52 -51.93 -0.39 0.29 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.41 3.83 7.95 -40.82 -0.32 3.51 16 33 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 36 H 0.10 1.97 6.85 -51.93 -0.36 1.62 16 37 H 0.04 0.60 7.88 -51.93 -0.41 0.20 16 38 H 0.05 0.78 7.97 -51.93 -0.41 0.37 16 39 H 0.09 1.47 7.45 -51.92 -0.39 1.08 16 40 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -33.43 362.44 -7.33 -40.76 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.99 Total: 11.35 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.88 Total: 7.23 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.45 Total: -58.19 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.51 Total: -0.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.43 -7.33 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689308321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.562 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds