Wall clock time and date at job start Tue Mar 31 2020 23:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.46149 * 2 1 4 4 C 1.54375 * 110.41652 * 237.58285 * 2 1 3 5 5 H 1.09006 * 110.32140 * 336.36817 * 4 2 1 6 6 N 1.46506 * 110.32544 * 98.47001 * 4 2 1 7 7 C 1.34776 * 120.00326 * 203.57467 * 6 4 2 8 8 O 1.21602 * 119.99850 * 0.02562 * 7 6 4 9 9 C 1.47445 * 120.00030 * 179.97438 * 7 6 4 10 10 C 1.37984 * 124.15292 * 180.02562 * 9 7 6 11 11 S 1.72104 * 104.03180 * 180.02562 * 10 9 7 12 12 N 1.56403 * 96.15276 * 0.02562 * 11 10 9 13 13 N 1.27413 * 109.87992 * 359.97438 * 12 11 10 14 14 C 1.54259 * 105.15532 * 217.42052 * 4 2 1 15 15 C 1.54380 * 105.05690 * 359.94572 * 14 4 2 16 16 N 1.48564 * 104.59526 * 23.85509 * 15 14 4 17 17 C 1.46897 * 110.99813 * 200.95707 * 16 15 14 18 18 C 1.50701 * 109.47220 * 293.84468 * 17 16 15 19 19 O 1.21289 * 119.99745 * 354.17952 * 18 17 16 20 20 N 1.34775 * 119.99881 * 174.17613 * 18 17 16 21 21 C 1.37096 * 120.00245 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99452 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00204 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00055 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99960 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46974 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47169 * 119.99987 * 25 23 21 28 28 H 1.48496 * 109.47564 * 240.00536 * 25 23 21 29 29 H 1.08993 * 109.47438 * 182.41331 * 1 2 3 30 30 H 1.09000 * 109.47585 * 302.42257 * 1 2 3 31 31 H 1.09003 * 109.47255 * 62.41427 * 1 2 3 32 32 H 0.97001 * 119.99901 * 23.58044 * 6 4 2 33 33 H 1.08000 * 127.98469 * 0.03292 * 10 9 7 34 34 H 1.09003 * 110.32294 * 118.83956 * 14 4 2 35 35 H 1.09000 * 110.32419 * 241.05038 * 14 4 2 36 36 H 1.08997 * 110.41000 * 142.62797 * 15 14 4 37 37 H 1.08993 * 110.41115 * 264.95472 * 15 14 4 38 38 H 1.08996 * 109.47103 * 53.84831 * 17 16 15 39 39 H 1.09008 * 109.46858 * 173.84632 * 17 16 15 40 40 H 0.97003 * 120.00294 * 0.02562 * 20 18 17 41 41 H 0.96998 * 119.99680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0684 -0.7756 -1.2213 5 1 1.3228 -1.4868 -1.5769 6 7 2.4356 0.1537 -2.2928 7 6 2.4704 -0.2716 -3.5712 8 8 2.1967 -1.4266 -3.8354 9 6 2.8394 0.6638 -4.6496 10 6 2.9019 0.3211 -5.9847 11 16 3.3751 1.7786 -6.7680 12 7 3.4562 2.6477 -5.4702 13 7 3.1534 1.9397 -4.4550 14 6 3.3173 -1.5208 -0.7071 15 6 3.4310 -1.1326 0.7827 16 7 2.0510 -0.7473 1.1755 17 6 2.0623 0.0997 2.3756 18 6 2.5567 -0.7022 3.5519 19 8 2.7683 -1.8902 3.4299 20 7 2.7638 -0.0991 4.7393 21 6 3.2131 -0.8287 5.8095 22 1 3.4014 -1.8866 5.7010 23 6 3.4270 -0.2069 7.0335 24 7 3.1983 1.0805 7.1654 25 14 4.0385 -1.2011 8.4919 26 1 4.2167 -2.6182 8.0852 27 1 5.3384 -0.6523 8.9551 28 1 3.0471 -1.1233 9.5948 29 1 -0.3634 -1.0267 0.0433 30 1 -0.3634 0.5510 0.8674 31 1 -0.3634 0.4759 -0.9108 32 1 2.6537 1.0751 -2.0821 33 1 2.7003 -0.6399 -6.4344 34 1 3.1840 -2.5979 -0.8086 35 1 4.2035 -1.1952 -1.2519 36 1 3.7703 -1.9840 1.3726 37 1 4.1121 -0.2906 0.9052 38 1 2.7229 0.9513 2.2130 39 1 1.0524 0.4567 2.5779 40 1 2.5942 0.8510 4.8369 41 1 3.3473 1.5144 8.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689308321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:46 Heat of formation + Delta-G solvation = -13.575770 kcal Electronic energy + Delta-G solvation = -26417.182195 eV Core-core repulsion = 22458.896247 eV Total energy + Delta-G solvation = -3958.285948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.20521 -41.14049 -40.20006 -39.12734 -36.05726 -35.49142 -33.39974 -33.23778 -32.41919 -31.99270 -28.48575 -27.92229 -26.62245 -25.87884 -24.55136 -22.53147 -21.77594 -21.56024 -20.92570 -20.15482 -19.84370 -18.15007 -17.58792 -17.47704 -17.10258 -16.76071 -16.49028 -16.40466 -16.18556 -15.79785 -15.50153 -15.42300 -15.22558 -14.70293 -14.45719 -13.92518 -13.78918 -13.66599 -13.48352 -13.07068 -12.97872 -12.86850 -12.79066 -12.48042 -12.43639 -12.38022 -12.13396 -12.10637 -11.72105 -11.53691 -11.47496 -11.26977 -11.18077 -10.91300 -10.34834 -10.21375 -10.00047 -9.42990 -8.46392 -5.94619 -0.94404 -0.05522 0.29123 0.52886 1.36246 1.41484 1.55536 1.87285 1.96975 2.06014 2.28991 2.67564 2.85932 3.20313 3.30229 3.38290 3.63163 3.75527 3.83798 4.01109 4.13848 4.22256 4.31899 4.35869 4.40515 4.41382 4.54163 4.68643 4.79770 4.87292 4.95938 5.02329 5.13085 5.27917 5.35470 5.41897 5.80500 5.91158 6.07485 6.17824 6.51152 6.61282 6.92670 7.13878 7.57172 8.13251 8.71312 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.001960 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.590622 B =14284.101723 C =14559.569859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.075 0.925 4 C 0.155 3.845 5 H 0.099 0.901 6 N -0.693 5.693 7 C 0.608 3.392 8 O -0.552 6.552 9 C -0.046 4.046 10 C -0.236 4.236 11 S 0.563 5.437 12 N -0.332 5.332 13 N -0.233 5.233 14 C -0.124 4.124 15 C 0.039 3.961 16 N -0.497 5.497 17 C 0.048 3.952 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.416 0.584 33 H 0.229 0.771 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 5.559 -29.886 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 H 0.093 0.907 4 C 0.049 3.951 5 H 0.117 0.883 6 N -0.344 5.344 7 C 0.390 3.610 8 O -0.429 6.429 9 C -0.193 4.193 10 C -0.393 4.393 11 S 0.698 5.302 12 N -0.313 5.313 13 N -0.102 5.102 14 C -0.163 4.163 15 C -0.089 4.089 16 N -0.222 5.222 17 C -0.083 4.083 18 C 0.229 3.771 19 O -0.500 6.500 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.230 0.770 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.690 5.417 -30.235 30.763 hybrid contribution 0.483 -0.278 1.865 1.946 sum -1.207 5.139 -28.370 28.857 Atomic orbital electron populations 1.21707 0.91951 1.02749 1.02647 1.22964 0.97593 0.96244 0.88454 0.90711 1.21663 0.96609 0.91015 0.85783 0.88340 1.45878 1.68111 1.15244 1.05199 1.16821 0.76878 0.85531 0.81787 1.90843 1.50337 1.18339 1.83351 1.22511 1.09313 0.92103 0.95420 1.29298 1.03357 1.10406 0.96194 1.81248 1.42377 0.90824 1.15767 1.78332 1.23848 1.28272 1.00859 1.71565 1.12163 1.03440 1.23038 1.22667 0.98213 1.01324 0.94074 1.23026 0.89707 1.00421 0.95740 1.65119 1.19135 1.36366 1.01541 1.21935 1.03177 0.93928 0.89276 1.20706 0.83030 0.88476 0.84860 1.90491 1.57388 1.17524 1.84636 1.41931 1.59008 1.11495 1.08807 1.19671 1.42398 0.94394 0.89458 0.90399 1.26023 0.97353 0.97005 1.01001 1.69678 1.49204 1.10084 1.27215 0.84884 0.78158 0.77979 0.77395 1.19878 1.19633 1.19616 0.92364 0.91813 0.90425 0.74599 0.75429 0.90724 0.90111 0.91713 0.93870 0.91144 0.86923 0.77033 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.31 71.98 0.67 -2.09 16 2 C 0.06 1.30 2.60 45.03 0.12 1.42 16 3 H 0.08 1.51 7.59 -2.38 -0.02 1.49 16 4 C 0.15 3.57 2.93 45.88 0.13 3.70 16 5 H 0.10 2.48 7.32 -2.38 -0.02 2.46 16 6 N -0.69 -13.73 5.03 -441.53 -2.22 -15.95 16 7 C 0.61 13.09 7.81 86.67 0.68 13.77 16 8 O -0.55 -14.82 16.47 -4.04 -0.07 -14.88 16 9 C -0.05 -0.79 6.87 41.36 0.28 -0.51 16 10 C -0.24 -2.46 11.21 67.76 0.76 -1.70 16 11 S 0.56 3.91 23.38 -56.49 -1.32 2.59 16 12 N -0.33 -5.36 12.49 37.02 0.46 -4.90 16 13 N -0.23 -4.37 11.24 -50.34 -0.57 -4.94 16 14 C -0.12 -3.25 6.79 31.49 0.21 -3.03 16 15 C 0.04 1.27 5.73 86.45 0.49 1.76 16 16 N -0.50 -15.99 4.78 -860.84 -4.11 -20.10 16 17 C 0.05 1.66 5.24 85.56 0.45 2.11 16 18 C 0.44 21.15 7.47 87.66 0.66 21.80 16 19 O -0.61 -34.27 14.39 -3.06 -0.04 -34.31 16 20 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 21 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 24 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.29 7.52 -2.39 -0.02 1.27 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.42 7.16 7.95 -92.71 -0.74 6.42 16 33 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 1.94 7.95 -2.39 -0.02 1.92 16 36 H 0.06 2.61 6.85 -2.39 -0.02 2.59 16 37 H 0.04 1.34 7.88 -2.39 -0.02 1.32 16 38 H 0.07 2.14 7.97 -2.39 -0.02 2.12 16 39 H 0.11 3.42 7.45 -2.38 -0.02 3.41 16 40 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 41 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -74.35 362.44 -1.81 -76.16 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.37 Total: 32.89 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 5.74 Total: 18.91 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -7.78 Total: -126.74 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.11 Total: -49.19 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.32 Total: 2.59 kcal Total: -74.35 -1.81 -76.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689308321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.580 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds