Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47371 * 300.00235 * 3 2 1 6 6 H 1.48496 * 109.46972 * 60.00202 * 3 2 1 7 7 C 1.38957 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99935 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99791 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99880 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47121 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99987 * 179.97438 * 13 12 10 15 15 C 1.53778 * 113.61802 * 205.00229 * 14 13 12 16 16 C 1.53777 * 87.08391 * 219.93707 * 15 14 13 17 17 C 1.52999 * 113.61776 * 139.97967 * 16 15 14 18 18 N 1.46502 * 109.47377 * 176.52715 * 17 16 15 19 19 C 1.34780 * 119.99811 * 180.02562 * 18 17 16 20 20 O 1.21561 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.47749 * 119.99428 * 180.02562 * 19 18 17 22 22 C 1.39359 * 124.11182 * 179.97438 * 21 19 18 23 23 N 1.30089 * 112.14021 * 180.28003 * 22 21 19 24 24 S 1.55917 * 108.75960 * 359.63220 * 23 22 21 25 25 N 1.31482 * 124.12174 * 0.03893 * 21 19 18 26 26 C 1.53775 * 87.17494 * 25.38854 * 16 15 14 27 27 H 0.97000 * 120.00268 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00161 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47192 * 59.99926 * 12 10 9 30 30 H 1.08998 * 109.47425 * 300.00341 * 12 10 9 31 31 H 1.00890 * 111.00146 * 303.95402 * 13 12 10 32 32 H 1.09003 * 112.85477 * 336.19992 * 14 13 12 33 33 H 1.08998 * 113.61751 * 105.38112 * 15 14 13 34 34 H 1.09004 * 113.61473 * 334.48809 * 15 14 13 35 35 H 1.08999 * 113.61426 * 270.79628 * 16 15 14 36 36 H 1.09009 * 109.47045 * 56.52529 * 17 16 15 37 37 H 1.09004 * 109.47349 * 296.53043 * 17 16 15 38 38 H 0.96999 * 119.99755 * 359.97438 * 18 17 16 39 39 H 1.08002 * 123.92565 * 0.02562 * 22 21 19 40 40 H 1.08999 * 113.61536 * 89.15441 * 26 16 15 41 41 H 1.09001 * 113.61826 * 220.06312 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2708 0.0005 15 6 2.3277 -8.4209 0.5954 16 6 1.7604 -9.3060 -0.5269 17 6 2.7876 -10.2677 -1.1276 18 7 2.1345 -11.1198 -2.1244 19 6 2.8491 -12.0502 -2.7878 20 8 4.0358 -12.1821 -2.5593 21 6 2.1904 -12.9091 -3.7934 22 6 2.8455 -13.8956 -4.5281 23 7 2.0447 -14.5070 -5.3511 24 16 0.6151 -13.9031 -5.2013 25 7 0.9152 -12.8350 -4.1050 26 6 1.5718 -8.0171 -1.3442 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8902 31 1 2.8327 -5.9124 -0.7825 32 1 0.4890 -7.2047 0.4069 33 1 2.0062 -8.7208 1.5928 34 1 3.4042 -8.2642 0.5260 35 1 0.8237 -9.7974 -0.2641 36 1 3.2084 -10.8898 -0.3375 37 1 3.5848 -9.6968 -1.6039 38 1 1.1875 -11.0148 -2.3064 39 1 3.8966 -14.1231 -4.4289 40 1 2.4412 -7.7497 -1.9448 41 1 0.6407 -7.9914 -1.9104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689389747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = 9.146791 kcal Electronic energy + Delta-G solvation = -25072.227513 eV Core-core repulsion = 21114.926890 eV Total energy + Delta-G solvation = -3957.300623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61188 -39.93850 -39.04737 -38.03950 -35.31148 -34.25236 -33.93302 -33.12509 -31.20442 -29.01108 -27.55689 -26.23653 -25.78339 -24.16386 -23.37633 -21.61632 -20.93722 -19.97213 -19.86494 -19.09294 -18.15301 -17.86598 -16.64082 -16.43876 -16.12777 -15.92196 -15.61973 -15.39448 -14.97990 -14.55142 -14.36183 -14.31221 -13.83126 -13.64330 -13.12780 -12.79006 -12.60288 -12.54516 -12.38374 -11.99182 -11.83645 -11.72707 -11.57945 -11.55692 -11.53530 -11.11364 -11.04317 -10.79723 -10.51498 -10.39882 -10.34146 -10.21760 -9.79281 -9.52178 -9.44014 -8.44522 -8.01727 -7.94931 -6.42029 -3.82701 -0.12123 0.83915 1.02821 1.08100 2.62115 2.66407 3.16323 3.26924 3.34392 3.90963 3.93025 4.09108 4.24963 4.28235 4.36754 4.47770 4.56695 4.68696 4.85168 4.95123 4.95812 5.18282 5.23293 5.27694 5.39716 5.57950 5.65012 5.68129 5.79795 5.81786 5.85863 5.95970 5.98058 6.10626 6.19422 6.32804 7.00480 7.27553 7.55356 7.64323 7.67300 8.06686 8.61237 9.17981 9.54392 10.05860 10.75797 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.001520 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.846930 B =18411.512152 C =18821.330539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.069 3.931 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.129 3.871 18 N -0.705 5.705 19 C 0.602 3.398 20 O -0.522 6.522 21 C 0.011 3.989 22 C 0.090 3.910 23 N -0.578 5.578 24 S 0.724 5.276 25 N -0.548 5.548 26 C -0.166 4.166 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.352 0.648 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.216 0.784 40 H 0.086 0.914 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -29.037 -7.905 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.288 5.288 14 C -0.043 4.043 15 C -0.154 4.154 16 C -0.145 4.145 17 C 0.007 3.993 18 N -0.356 5.356 19 C 0.382 3.618 20 O -0.397 6.397 21 C -0.164 4.164 22 C -0.103 4.103 23 N -0.419 5.419 24 S 0.765 5.235 25 N -0.399 5.399 26 C -0.205 4.205 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.245 0.755 39 H 0.232 0.768 40 H 0.105 0.895 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.036 -29.397 -8.046 30.744 hybrid contribution 0.400 1.270 -0.212 1.348 sum -3.636 -28.127 -8.258 29.539 Atomic orbital electron populations 1.69616 1.05944 1.28039 1.50756 1.25264 0.95636 0.99730 0.97352 0.85799 0.79731 0.81121 0.77687 1.19207 1.20795 1.20736 1.19763 0.93422 0.82247 1.47419 0.87856 1.41874 1.09191 1.04633 1.64407 1.19852 0.88409 0.84774 0.84423 1.90524 1.13782 1.87086 1.55356 1.21716 0.94437 0.91025 1.01076 1.60002 1.18300 0.99551 1.50967 1.23020 0.97561 0.88735 0.94940 1.23050 1.01313 0.93894 0.97146 1.22673 0.99064 0.94255 0.98487 1.21540 0.95410 0.91936 0.90453 1.45839 1.13805 1.35553 1.40423 1.16741 0.85668 0.79660 0.79731 1.90860 1.14144 1.69349 1.65343 1.22546 0.88335 1.01966 1.03545 1.23816 1.03107 0.92163 0.91217 1.72274 1.09669 1.32451 1.27475 1.79151 1.11169 1.11585 1.21559 1.72428 1.20041 1.27322 1.20081 1.23882 1.02472 0.96274 0.97886 0.91942 0.77480 0.93881 0.89637 0.82774 0.88626 0.90984 0.89021 0.88587 0.90718 0.90539 0.75473 0.76817 0.89531 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 11 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 13 N -0.66 -10.23 6.24 -107.03 -0.67 -10.90 16 14 C 0.07 0.76 4.18 -66.81 -0.28 0.49 16 15 C -0.12 -1.09 7.44 -25.92 -0.19 -1.29 16 16 C -0.13 -0.95 3.75 -89.81 -0.34 -1.29 16 17 C 0.13 1.06 5.50 -4.04 -0.02 1.04 16 18 N -0.71 -5.67 5.55 -61.28 -0.34 -6.01 16 19 C 0.60 5.81 7.82 -12.37 -0.10 5.71 16 20 O -0.52 -6.45 16.80 5.31 0.09 -6.36 16 21 C 0.01 0.09 6.81 -83.71 -0.57 -0.48 16 22 C 0.09 0.67 11.22 -17.87 -0.20 0.47 16 23 N -0.58 -4.28 11.41 19.43 0.22 -4.05 16 24 S 0.72 3.82 23.69 -107.50 -2.55 1.27 16 25 N -0.55 -4.02 11.00 23.18 0.25 -3.76 16 26 C -0.17 -1.52 7.27 -25.83 -0.19 -1.70 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.35 5.71 7.91 -39.30 -0.31 5.40 16 32 H 0.10 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.08 0.71 7.88 -51.93 -0.41 0.31 16 38 H 0.41 2.77 8.06 -40.82 -0.33 2.44 16 39 H 0.22 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.09 0.86 7.61 -51.93 -0.40 0.47 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -33.65 370.37 -8.98 -42.64 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.06 Total: 13.46 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.24 Total: 6.04 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.13 Total: -62.87 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.18 Total: -22.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.55 Total: 1.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.65 -8.98 -42.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689389747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.783 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds