Wall clock time and date at job start Tue Mar 31 2020 22:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47371 * 300.00235 * 3 2 1 6 6 H 1.48496 * 109.46972 * 60.00202 * 3 2 1 7 7 C 1.38957 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99935 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99791 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99880 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47121 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99987 * 179.97438 * 13 12 10 15 15 C 1.53778 * 113.61802 * 205.00229 * 14 13 12 16 16 C 1.53777 * 87.08391 * 219.93707 * 15 14 13 17 17 C 1.52999 * 113.61776 * 139.97967 * 16 15 14 18 18 N 1.46502 * 109.47377 * 176.52715 * 17 16 15 19 19 C 1.34780 * 119.99811 * 180.02562 * 18 17 16 20 20 O 1.21561 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.47749 * 119.99428 * 180.02562 * 19 18 17 22 22 C 1.39359 * 124.11182 * 179.97438 * 21 19 18 23 23 N 1.30089 * 112.14021 * 180.28003 * 22 21 19 24 24 S 1.55917 * 108.75960 * 359.63220 * 23 22 21 25 25 N 1.31482 * 124.12174 * 0.03893 * 21 19 18 26 26 C 1.53775 * 87.17494 * 25.38854 * 16 15 14 27 27 H 0.97000 * 120.00268 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00161 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.47192 * 59.99926 * 12 10 9 30 30 H 1.08998 * 109.47425 * 300.00341 * 12 10 9 31 31 H 1.00890 * 111.00146 * 303.95402 * 13 12 10 32 32 H 1.09003 * 112.85477 * 336.19992 * 14 13 12 33 33 H 1.08998 * 113.61751 * 105.38112 * 15 14 13 34 34 H 1.09004 * 113.61473 * 334.48809 * 15 14 13 35 35 H 1.08999 * 113.61426 * 270.79628 * 16 15 14 36 36 H 1.09009 * 109.47045 * 56.52529 * 17 16 15 37 37 H 1.09004 * 109.47349 * 296.53043 * 17 16 15 38 38 H 0.96999 * 119.99755 * 359.97438 * 18 17 16 39 39 H 1.08002 * 123.92565 * 0.02562 * 22 21 19 40 40 H 1.08999 * 113.61536 * 89.15441 * 26 16 15 41 41 H 1.09001 * 113.61826 * 220.06312 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9795 -0.0007 14 6 1.4982 -7.2708 0.0005 15 6 2.3277 -8.4209 0.5954 16 6 1.7604 -9.3060 -0.5269 17 6 2.7876 -10.2677 -1.1276 18 7 2.1345 -11.1198 -2.1244 19 6 2.8491 -12.0502 -2.7878 20 8 4.0358 -12.1821 -2.5593 21 6 2.1904 -12.9091 -3.7934 22 6 2.8455 -13.8956 -4.5281 23 7 2.0447 -14.5070 -5.3511 24 16 0.6151 -13.9031 -5.2013 25 7 0.9152 -12.8350 -4.1050 26 6 1.5718 -8.0171 -1.3442 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8902 31 1 2.8327 -5.9124 -0.7825 32 1 0.4890 -7.2047 0.4069 33 1 2.0062 -8.7208 1.5928 34 1 3.4042 -8.2642 0.5260 35 1 0.8237 -9.7974 -0.2641 36 1 3.2084 -10.8898 -0.3375 37 1 3.5848 -9.6968 -1.6039 38 1 1.1875 -11.0148 -2.3064 39 1 3.8966 -14.1231 -4.4289 40 1 2.4412 -7.7497 -1.9448 41 1 0.6407 -7.9914 -1.9104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689389747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:08 Heat of formation + Delta-G solvation = -18.680268 kcal Electronic energy + Delta-G solvation = -25073.434185 eV Core-core repulsion = 21114.926890 eV Total energy + Delta-G solvation = -3958.507295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.18889 -40.74649 -40.11700 -39.57393 -36.28406 -35.88017 -34.84063 -34.20153 -33.23400 -29.82717 -28.49542 -27.52961 -26.53827 -25.80102 -24.09507 -22.44188 -21.63823 -21.22587 -20.47025 -20.36346 -19.85877 -18.80552 -17.76230 -17.23987 -17.09980 -16.86952 -16.59182 -16.35581 -16.24104 -15.99138 -15.70391 -15.47638 -14.98284 -14.90718 -14.35569 -13.99662 -13.55117 -13.52550 -13.31651 -13.30191 -12.98822 -12.83686 -12.65933 -12.53511 -12.41243 -12.28843 -12.12476 -12.11744 -11.87624 -11.56509 -11.51348 -11.28957 -11.14567 -10.36576 -10.32255 -10.07192 -10.01505 -9.19241 -8.47111 -5.95739 -0.67217 0.33194 0.43309 0.61355 1.36487 1.41872 1.56057 1.96247 1.99414 2.05528 2.29426 2.97904 3.20281 3.36869 3.51654 3.60476 3.63333 3.76686 3.94688 4.00881 4.07455 4.27397 4.35780 4.45379 4.46901 4.53017 4.61090 4.72251 4.85997 4.90401 4.95022 5.13143 5.21631 5.29110 5.35041 5.40925 5.48711 5.95048 6.21559 6.35653 6.44899 6.60456 6.97420 7.12744 7.56498 8.12113 8.70446 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.001520 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.846930 B =18411.512152 C =18821.330539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.674 5.674 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.103 4.103 17 C 0.132 3.868 18 N -0.696 5.696 19 C 0.601 3.399 20 O -0.557 6.557 21 C -0.005 4.005 22 C 0.087 3.913 23 N -0.602 5.602 24 S 0.796 5.204 25 N -0.561 5.561 26 C -0.160 4.160 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.344 0.656 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.223 0.777 40 H 0.074 0.926 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 -29.967 -8.295 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.066 4.066 13 N -0.305 5.305 14 C -0.049 4.049 15 C -0.154 4.154 16 C -0.122 4.122 17 C 0.009 3.991 18 N -0.347 5.347 19 C 0.382 3.618 20 O -0.435 6.435 21 C -0.179 4.179 22 C -0.105 4.105 23 N -0.444 5.444 24 S 0.837 5.163 25 N -0.413 5.413 26 C -0.199 4.199 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.239 0.761 40 H 0.093 0.907 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.985 -30.341 -8.425 32.053 hybrid contribution 0.908 1.475 -0.145 1.738 sum -5.078 -28.866 -8.570 30.537 Atomic orbital electron populations 1.69669 1.06784 1.29237 1.50368 1.26030 0.96557 1.02371 0.96268 0.84874 0.77989 0.77122 0.78355 1.19918 1.19551 1.19555 1.19706 0.92696 0.84130 1.49914 0.90440 1.41941 1.09337 1.04719 1.65067 1.21001 0.88290 0.86323 0.82083 1.90491 1.16007 1.88021 1.56685 1.21578 0.94084 0.88001 1.02974 1.60034 1.18676 1.00825 1.51008 1.23241 0.98143 0.86841 0.96719 1.23024 1.00384 0.93694 0.98332 1.22542 0.99479 0.93337 0.96830 1.21461 0.95342 0.91909 0.90382 1.45766 1.14091 1.34910 1.39893 1.16946 0.85333 0.79750 0.79801 1.90836 1.15611 1.70472 1.66591 1.22272 0.88737 1.02657 1.04184 1.23893 1.03614 0.91961 0.91048 1.72179 1.10910 1.33313 1.28004 1.78873 1.09229 1.09153 1.19002 1.72265 1.19751 1.28346 1.20980 1.23797 1.02611 0.96476 0.97058 0.91286 0.76928 0.91547 0.87749 0.83667 0.87164 0.89971 0.90479 0.86252 0.90765 0.91994 0.74500 0.76117 0.90712 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.50 13.05 21.66 0.28 -49.21 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.48 5.29 -306.99 -1.62 -31.11 16 10 C 0.44 20.77 7.82 87.66 0.69 21.46 16 11 O -0.63 -35.08 15.78 -3.06 -0.05 -35.13 16 12 C 0.07 2.20 6.01 85.56 0.51 2.72 16 13 N -0.67 -20.53 6.24 -492.54 -3.08 -23.61 16 14 C 0.06 1.23 4.18 45.50 0.19 1.42 16 15 C -0.12 -2.02 7.44 31.12 0.23 -1.79 16 16 C -0.10 -1.34 3.75 -10.27 -0.04 -1.38 16 17 C 0.13 2.05 5.50 86.38 0.47 2.52 16 18 N -0.70 -10.41 5.55 -466.05 -2.59 -13.00 16 19 C 0.60 11.39 7.82 86.76 0.68 12.07 16 20 O -0.56 -14.03 16.80 -3.91 -0.07 -14.10 16 21 C -0.01 -0.09 6.81 41.98 0.29 0.20 16 22 C 0.09 1.23 11.22 85.22 0.96 2.18 16 23 N -0.60 -8.10 11.41 -92.45 -1.05 -9.15 16 24 S 0.80 6.77 23.69 -56.49 -1.34 5.43 16 25 N -0.56 -7.26 11.00 -80.59 -0.89 -8.15 16 26 C -0.16 -2.63 7.27 31.18 0.23 -2.41 16 27 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 28 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 29 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.10 3.12 8.13 -2.39 -0.02 3.10 16 31 H 0.34 11.26 7.91 -89.70 -0.71 10.55 16 32 H 0.11 1.96 7.87 -2.39 -0.02 1.94 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.60 8.10 -2.38 -0.02 1.58 16 35 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.17 7.88 -2.39 -0.02 1.15 16 38 H 0.42 4.84 8.06 -92.71 -0.75 4.09 16 39 H 0.22 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.07 1.44 7.61 -2.39 -0.02 1.42 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -73.64 370.37 -3.96 -77.60 By element: Atomic # 1 Polarization: 37.97 SS G_CDS: -1.07 Total: 36.89 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.49 Total: 18.44 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -8.94 Total: -134.23 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.11 Total: -49.23 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.34 Total: 5.43 kcal Total: -73.64 -3.96 -77.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689389747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.915 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds