Wall clock time and date at job start Tue Mar 31 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99835 * 2 1 4 4 H 1.48505 * 109.47495 * 240.00273 * 3 2 1 5 5 H 1.48499 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47153 * 120.00641 * 3 2 1 7 7 C 1.38796 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99906 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99880 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00383 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47507 * 185.23720 * 14 13 11 16 16 H 1.09000 * 112.96805 * 308.98304 * 15 14 13 17 17 C 1.53949 * 113.77095 * 177.30226 * 15 14 13 18 18 C 1.53953 * 86.29160 * 222.09509 * 17 15 14 19 19 N 1.47589 * 113.76937 * 80.66189 * 15 14 13 20 20 C 1.34778 * 134.48546 * 318.92701 * 19 15 14 21 21 O 1.21282 * 120.00528 * 5.12271 * 20 19 15 22 22 C 1.50706 * 119.99336 * 185.11974 * 20 19 15 23 23 N 1.46502 * 109.46513 * 180.02562 * 22 20 19 24 24 N 1.28603 * 124.61640 * 269.69931 * 23 22 20 25 25 C 1.31380 * 108.71774 * 179.83604 * 24 23 22 26 26 C 1.39680 * 105.90005 * 0.41283 * 25 24 23 27 27 N 1.28599 * 124.61994 * 90.00492 * 23 22 20 28 28 H 0.96997 * 120.00144 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47009 * 300.00191 * 10 9 7 30 30 H 1.09005 * 109.46639 * 60.00344 * 10 9 7 31 31 H 0.97007 * 120.00173 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47009 * 305.24265 * 14 13 11 33 33 H 1.08998 * 109.46841 * 65.23427 * 14 13 11 34 34 H 1.09006 * 113.73775 * 336.43789 * 17 15 14 35 35 H 1.08996 * 113.74609 * 107.74539 * 17 15 14 36 36 H 1.08996 * 113.77234 * 137.90596 * 18 17 15 37 37 H 1.08997 * 113.76344 * 269.19373 * 18 17 15 38 38 H 1.08995 * 109.47451 * 300.00479 * 22 20 19 39 39 H 1.08998 * 109.46804 * 60.00435 * 22 20 19 40 40 H 1.08002 * 127.05020 * 180.15628 * 25 24 23 41 41 H 1.07994 * 127.05375 * 179.72826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3430 0.0007 14 6 2.3306 -7.7150 0.0008 15 6 3.4969 -8.6963 0.1332 16 1 4.2932 -8.5103 -0.5875 17 6 3.0615 -10.1709 0.2099 18 6 4.1240 -10.3232 1.3136 19 7 3.9764 -8.8669 1.5186 20 6 4.1918 -8.0304 2.5532 21 8 3.8884 -6.8598 2.4600 22 6 4.8098 -8.5497 3.8258 23 7 4.9374 -7.4535 4.7893 24 7 5.9670 -6.6902 4.8953 25 6 5.7472 -5.8161 5.8512 26 6 4.4753 -6.1066 6.3504 27 7 4.0374 -7.1269 5.6479 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 -0.8905 30 1 3.1245 -3.7312 0.8895 31 1 3.8011 -6.1834 0.0004 32 1 1.6474 -7.8472 0.8398 33 1 1.8005 -7.9045 -0.9326 34 1 2.0394 -10.3089 0.5627 35 1 3.2815 -10.7410 -0.6926 36 1 3.7937 -10.9230 2.1617 37 1 5.1052 -10.6173 0.9412 38 1 4.1753 -9.3301 4.2458 39 1 5.7960 -8.9605 3.6095 40 1 6.4148 -5.0359 6.1857 41 1 3.9581 -5.5973 7.1499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689508995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:03 Heat of formation + Delta-G solvation = 90.157959 kcal Electronic energy + Delta-G solvation = -26583.819140 eV Core-core repulsion = 22630.031424 eV Total energy + Delta-G solvation = -3953.787716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.65716 -40.90398 -38.82591 -38.15337 -34.36686 -33.87553 -32.51930 -32.34466 -30.95194 -29.86984 -28.16578 -27.63256 -25.39611 -23.54579 -23.09191 -23.00662 -21.53279 -20.27223 -19.40358 -18.05936 -17.73993 -17.63866 -16.75803 -16.43655 -16.03121 -15.74779 -15.69489 -15.00396 -14.91511 -14.72763 -14.55087 -14.47146 -13.88405 -13.77900 -13.15678 -13.04552 -12.82503 -12.68194 -12.55231 -12.37598 -11.98982 -11.75637 -11.61036 -11.46960 -10.97159 -10.95666 -10.92055 -10.69085 -10.41635 -10.38402 -9.73227 -9.44371 -9.24302 -9.19398 -8.97936 -8.69378 -8.13054 -6.39124 -6.13028 -3.82328 1.48184 1.91887 2.15518 2.41588 2.42341 3.14426 3.29042 3.30071 3.33050 3.38612 3.68023 3.80311 3.92330 3.96819 4.29139 4.37606 4.41730 4.52560 4.61336 4.71332 4.77083 4.81105 4.93700 5.03903 5.20168 5.21645 5.26593 5.31230 5.50276 5.61316 5.78407 5.85679 5.92914 6.06110 6.07022 6.31344 6.45740 6.76015 7.15189 7.67786 7.68684 7.87909 8.18974 8.43950 8.79464 9.31909 10.94511 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.003176 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.538196 B = 8813.780062 C =11029.030067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.538 3.462 12 O -0.526 6.526 13 N -0.724 5.724 14 C 0.123 3.877 15 C 0.127 3.873 16 H 0.103 0.897 17 C -0.142 4.142 18 C 0.097 3.903 19 N -0.645 5.645 20 C 0.517 3.483 21 O -0.491 6.491 22 C 0.132 3.868 23 N -0.149 5.149 24 N -0.284 5.284 25 C -0.020 4.020 26 C -0.020 4.020 27 N -0.281 5.281 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.397 0.603 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.199 0.801 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.359 -26.366 6.294 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.682 4.682 8 H 0.089 0.911 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.325 3.675 12 O -0.401 6.401 13 N -0.377 5.377 14 C -0.002 4.002 15 C 0.025 3.975 16 H 0.121 0.879 17 C -0.180 4.180 18 C -0.025 4.025 19 N -0.385 5.385 20 C 0.302 3.698 21 O -0.362 6.362 22 C 0.008 3.992 23 N -0.049 5.049 24 N -0.124 5.124 25 C -0.204 4.204 26 C -0.203 4.203 27 N -0.121 5.121 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.216 0.784 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 11.934 -26.841 5.522 29.889 hybrid contribution 2.640 2.106 0.720 3.453 sum 14.574 -24.735 6.242 29.380 Atomic orbital electron populations 1.70014 1.05930 1.27429 1.47070 1.24978 0.95017 0.98943 0.94633 0.86235 0.79237 0.81293 0.78793 1.19966 1.20816 1.19949 1.22843 0.94885 0.91773 1.58703 0.91084 1.85313 1.05198 0.96223 1.96688 1.23481 1.06310 0.95484 1.04693 1.20171 0.86351 0.86247 0.74762 1.90675 1.15413 1.85668 1.48316 1.45730 1.09857 1.04792 1.77370 1.21371 0.94879 0.81274 1.02685 1.23185 0.96136 0.95661 0.82552 0.87921 1.23548 1.00455 0.94395 0.99619 1.23312 0.99723 0.80871 0.98625 1.50200 1.67166 1.09187 1.11900 1.20187 0.79271 0.86149 0.84149 1.90920 1.48478 1.15793 1.81042 1.21513 1.05331 0.86147 0.86252 1.47266 1.07969 1.24756 1.24913 1.74017 1.13657 1.05103 1.19664 1.24805 0.98452 1.00940 0.96163 1.24827 0.95781 0.96707 1.02983 1.74061 1.18222 1.16651 1.03146 0.92218 0.89585 0.89339 0.76916 0.91015 0.90448 0.88145 0.88804 0.89493 0.89065 0.84989 0.84852 0.78428 0.78395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.30 13.22 55.49 0.73 -26.56 16 2 C 0.07 2.19 5.49 -17.43 -0.10 2.10 16 3 Si 0.92 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -16.18 9.50 30.94 0.29 -15.88 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.78 20.57 -107.50 -2.21 -4.00 16 10 C -0.15 -3.45 6.16 36.01 0.22 -3.23 16 11 C 0.54 11.53 7.85 -10.99 -0.09 11.45 16 12 O -0.53 -13.16 15.86 5.56 0.09 -13.08 16 13 N -0.72 -11.50 4.17 -60.30 -0.25 -11.75 16 14 C 0.12 1.51 5.22 -4.05 -0.02 1.49 16 15 C 0.13 0.94 4.29 -66.86 -0.29 0.65 16 16 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 17 C -0.14 -0.51 7.86 -25.79 -0.20 -0.71 16 18 C 0.10 0.27 8.63 -2.84 -0.02 0.25 16 19 N -0.64 -4.94 3.50 -170.15 -0.60 -5.54 16 20 C 0.52 5.81 8.05 -10.98 -0.09 5.72 16 21 O -0.49 -8.29 14.98 5.56 0.08 -8.21 16 22 C 0.13 1.11 6.78 -5.19 -0.04 1.07 16 23 N -0.15 -1.88 3.44 -11.66 -0.04 -1.92 16 24 N -0.28 -3.73 12.05 30.68 0.37 -3.36 16 25 C -0.02 -0.23 12.20 -17.21 -0.21 -0.44 16 26 C -0.02 -0.23 12.20 -17.21 -0.21 -0.44 16 27 N -0.28 -3.84 12.05 30.67 0.37 -3.48 16 28 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 30 H 0.09 2.04 8.14 -51.91 -0.42 1.62 16 31 H 0.40 5.69 8.15 -40.82 -0.33 5.36 16 32 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.42 8.10 -51.93 -0.42 0.00 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -43.78 374.81 -6.94 -50.73 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.37 Total: 2.12 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.74 Total: 2.03 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.59 Total: -52.62 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.28 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -43.78 -6.94 -50.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.886 kcal (2) G-P(sol) polarization free energy of solvation -43.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds