Wall clock time and date at job start Tue Mar 31 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99835 * 2 1 4 4 H 1.48505 * 109.47495 * 240.00273 * 3 2 1 5 5 H 1.48499 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47153 * 120.00641 * 3 2 1 7 7 C 1.38796 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99906 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46886 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99880 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00383 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47507 * 185.23720 * 14 13 11 16 16 H 1.09000 * 112.96805 * 308.98304 * 15 14 13 17 17 C 1.53949 * 113.77095 * 177.30226 * 15 14 13 18 18 C 1.53953 * 86.29160 * 222.09509 * 17 15 14 19 19 N 1.47589 * 113.76937 * 80.66189 * 15 14 13 20 20 C 1.34778 * 134.48546 * 318.92701 * 19 15 14 21 21 O 1.21282 * 120.00528 * 5.12271 * 20 19 15 22 22 C 1.50706 * 119.99336 * 185.11974 * 20 19 15 23 23 N 1.46502 * 109.46513 * 180.02562 * 22 20 19 24 24 N 1.28603 * 124.61640 * 269.69931 * 23 22 20 25 25 C 1.31380 * 108.71774 * 179.83604 * 24 23 22 26 26 C 1.39680 * 105.90005 * 0.41283 * 25 24 23 27 27 N 1.28599 * 124.61994 * 90.00492 * 23 22 20 28 28 H 0.96997 * 120.00144 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47009 * 300.00191 * 10 9 7 30 30 H 1.09005 * 109.46639 * 60.00344 * 10 9 7 31 31 H 0.97007 * 120.00173 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47009 * 305.24265 * 14 13 11 33 33 H 1.08998 * 109.46841 * 65.23427 * 14 13 11 34 34 H 1.09006 * 113.73775 * 336.43789 * 17 15 14 35 35 H 1.08996 * 113.74609 * 107.74539 * 17 15 14 36 36 H 1.08996 * 113.77234 * 137.90596 * 18 17 15 37 37 H 1.08997 * 113.76344 * 269.19373 * 18 17 15 38 38 H 1.08995 * 109.47451 * 300.00479 * 22 20 19 39 39 H 1.08998 * 109.46804 * 60.00435 * 22 20 19 40 40 H 1.08002 * 127.05020 * 180.15628 * 25 24 23 41 41 H 1.07994 * 127.05375 * 179.72826 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6966 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3430 0.0007 14 6 2.3306 -7.7150 0.0008 15 6 3.4969 -8.6963 0.1332 16 1 4.2932 -8.5103 -0.5875 17 6 3.0615 -10.1709 0.2099 18 6 4.1240 -10.3232 1.3136 19 7 3.9764 -8.8669 1.5186 20 6 4.1918 -8.0304 2.5532 21 8 3.8884 -6.8598 2.4600 22 6 4.8098 -8.5497 3.8258 23 7 4.9374 -7.4535 4.7893 24 7 5.9670 -6.6902 4.8953 25 6 5.7472 -5.8161 5.8512 26 6 4.4753 -6.1066 6.3504 27 7 4.0374 -7.1269 5.6479 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7312 -0.8905 30 1 3.1245 -3.7312 0.8895 31 1 3.8011 -6.1834 0.0004 32 1 1.6474 -7.8472 0.8398 33 1 1.8005 -7.9045 -0.9326 34 1 2.0394 -10.3089 0.5627 35 1 3.2815 -10.7410 -0.6926 36 1 3.7937 -10.9230 2.1617 37 1 5.1052 -10.6173 0.9412 38 1 4.1753 -9.3301 4.2458 39 1 5.7960 -8.9605 3.6095 40 1 6.4148 -5.0359 6.1857 41 1 3.9581 -5.5973 7.1499 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689508995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:02 Heat of formation + Delta-G solvation = 54.688066 kcal Electronic energy + Delta-G solvation = -26585.357229 eV Core-core repulsion = 22630.031424 eV Total energy + Delta-G solvation = -3955.325806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.50490 -41.59812 -40.40250 -38.95063 -35.70537 -34.74073 -34.63574 -33.41482 -31.94501 -31.17210 -28.82488 -28.76591 -27.68089 -24.33566 -23.85630 -23.71985 -22.29110 -21.80091 -20.22033 -19.80036 -18.68117 -18.50302 -17.84350 -17.59536 -17.33092 -16.92820 -16.74913 -16.57872 -16.27299 -15.98875 -15.71906 -15.37571 -15.20094 -14.77188 -14.65915 -14.49740 -13.93795 -13.62357 -13.31943 -13.28328 -13.22928 -13.03293 -12.89898 -12.68795 -12.62348 -12.39519 -12.08132 -11.84056 -11.77107 -11.34540 -11.22705 -11.17564 -10.98214 -10.37539 -10.24287 -10.13417 -9.80428 -8.73519 -8.38853 -6.18687 0.67076 1.19624 1.22390 1.39359 1.40800 1.42320 1.52518 1.56874 1.57035 1.80426 2.23034 2.29152 2.94475 3.15746 3.25477 3.26661 3.49045 3.70524 3.90382 3.92648 3.97130 4.00488 4.12932 4.16169 4.17267 4.30189 4.38211 4.47251 4.54758 4.69817 4.71863 4.91350 5.01979 5.03868 5.29217 5.31965 5.35387 5.40616 5.66039 6.14666 6.40283 6.54623 6.94845 7.01034 7.17957 7.31898 8.70690 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009996 B = 0.003176 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.538196 B = 8813.780062 C =11029.030067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.553 4.553 8 H 0.078 0.922 9 S -0.145 6.145 10 C -0.125 4.125 11 C 0.536 3.464 12 O -0.571 6.571 13 N -0.698 5.698 14 C 0.119 3.881 15 C 0.121 3.879 16 H 0.126 0.874 17 C -0.128 4.128 18 C 0.104 3.896 19 N -0.645 5.645 20 C 0.508 3.492 21 O -0.564 6.564 22 C 0.127 3.873 23 N -0.156 5.156 24 N -0.307 5.307 25 C -0.027 4.027 26 C -0.030 4.030 27 N -0.314 5.314 28 H 0.273 0.727 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.407 0.593 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.228 0.772 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.210 -28.186 5.979 33.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.700 4.700 8 H 0.096 0.904 9 S 0.083 5.917 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.450 6.450 13 N -0.350 5.350 14 C -0.005 4.005 15 C 0.019 3.981 16 H 0.144 0.856 17 C -0.166 4.166 18 C -0.016 4.016 19 N -0.382 5.382 20 C 0.296 3.704 21 O -0.441 6.441 22 C 0.004 3.996 23 N -0.056 5.056 24 N -0.148 5.148 25 C -0.210 4.210 26 C -0.213 4.213 27 N -0.154 5.154 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.242 0.758 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.245 0.755 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.836 -28.781 5.184 32.792 hybrid contribution 1.764 2.496 0.791 3.158 sum 16.600 -26.284 5.975 31.656 Atomic orbital electron populations 1.70174 1.07982 1.28848 1.47633 1.26172 0.96051 1.03351 0.93435 0.84969 0.77849 0.75406 0.79531 1.18415 1.19769 1.18856 1.23156 0.95199 0.92110 1.59561 0.90417 1.85440 1.10236 0.99056 1.97011 1.23294 1.03539 0.95196 1.05552 1.19920 0.86206 0.86692 0.75052 1.90651 1.17198 1.86151 1.51009 1.45553 1.09665 1.05244 1.74550 1.21629 0.96940 0.80148 1.01788 1.23446 0.95034 0.96543 0.83127 0.85609 1.23549 1.00440 0.91214 1.01412 1.23705 1.01105 0.77708 0.99068 1.50419 1.65363 1.11273 1.11146 1.20721 0.78571 0.85599 0.85516 1.90877 1.51880 1.18829 1.82547 1.21928 1.07544 0.85558 0.84541 1.47646 1.07476 1.25300 1.25171 1.73962 1.14411 1.05947 1.20447 1.25389 0.98868 1.01159 0.95545 1.25383 0.96166 0.96374 1.03349 1.74004 1.19290 1.17915 1.04223 0.91787 0.87442 0.89456 0.75752 0.94074 0.89662 0.88964 0.85560 0.87266 0.85844 0.82337 0.81484 0.75547 0.75927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.48 13.22 21.65 0.29 -58.19 16 2 C 0.01 0.89 5.49 84.86 0.47 1.35 16 3 Si 1.00 45.92 29.55 68.60 2.03 47.95 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -34.17 9.50 67.95 0.65 -33.53 16 8 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16 9 S -0.14 -8.84 20.57 -56.49 -1.16 -10.00 16 10 C -0.12 -5.94 6.16 71.24 0.44 -5.50 16 11 C 0.54 23.78 7.85 87.66 0.69 24.47 16 12 O -0.57 -30.06 15.86 -3.03 -0.05 -30.11 16 13 N -0.70 -22.45 4.17 -463.08 -1.93 -24.38 16 14 C 0.12 2.91 5.22 86.38 0.45 3.36 16 15 C 0.12 1.49 4.29 45.09 0.19 1.68 16 16 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 17 C -0.13 -0.44 7.86 31.25 0.25 -0.19 16 18 C 0.10 0.10 8.63 86.44 0.75 0.85 16 19 N -0.64 -8.35 3.50 -810.63 -2.84 -11.19 16 20 C 0.51 11.01 8.05 87.66 0.71 11.72 16 21 O -0.56 -19.55 14.98 -3.04 -0.05 -19.59 16 22 C 0.13 1.93 6.78 85.63 0.58 2.51 16 23 N -0.16 -3.86 3.44 -190.80 -0.66 -4.52 16 24 N -0.31 -7.94 12.05 -56.86 -0.69 -8.63 16 25 C -0.03 -0.60 12.20 85.11 1.04 0.44 16 26 C -0.03 -0.69 12.20 85.11 1.04 0.34 16 27 N -0.31 -8.65 12.05 -56.86 -0.69 -9.34 16 28 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 29 H 0.11 4.59 8.14 -2.40 -0.02 4.57 16 30 H 0.09 4.16 8.14 -2.39 -0.02 4.14 16 31 H 0.41 11.56 8.15 -92.70 -0.76 10.81 16 32 H 0.04 1.28 8.13 -2.38 -0.02 1.26 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 0.53 8.10 -2.38 -0.02 0.51 16 35 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.11 -0.29 8.14 -2.39 -0.02 -0.30 16 37 H 0.12 -0.53 8.14 -2.39 -0.02 -0.54 16 38 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 41 H 0.22 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -102.71 374.81 1.81 -100.90 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.31 Total: 19.58 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.24 Total: 7.51 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.51 Total: -116.25 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -102.71 1.81 -100.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.593 kcal (2) G-P(sol) polarization free energy of solvation -102.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds