Wall clock time and date at job start Tue Mar 31 2020 22:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 120.00313 * 2 1 4 4 H 1.48507 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47292 * 299.99811 * 3 2 1 6 6 H 1.48496 * 109.47133 * 59.99731 * 3 2 1 7 7 C 1.38805 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99888 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99921 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47152 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99975 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99831 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46947 * 174.81003 * 14 13 11 16 16 H 1.09003 * 112.73915 * 314.98271 * 15 14 13 17 17 C 1.53491 * 113.46745 * 85.73118 * 15 14 13 18 18 C 1.53613 * 83.30866 * 140.83108 * 17 15 14 19 19 N 1.47067 * 113.46548 * 184.24322 * 15 14 13 20 20 C 1.34770 * 136.06434 * 38.06611 * 19 15 14 21 21 O 1.21285 * 119.99471 * 5.03333 * 20 19 15 22 22 C 1.50696 * 120.00586 * 185.03422 * 20 19 15 23 23 N 1.46503 * 109.47364 * 180.02562 * 22 20 19 24 24 N 1.28608 * 124.61541 * 269.70020 * 23 22 20 25 25 C 1.31378 * 108.71758 * 179.83076 * 24 23 22 26 26 C 1.39676 * 105.90022 * 0.41007 * 25 24 23 27 27 N 1.28593 * 124.61953 * 89.99719 * 23 22 20 28 28 H 0.97001 * 119.99284 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46556 * 59.99945 * 10 9 7 30 30 H 1.08994 * 109.47141 * 299.99900 * 10 9 7 31 31 H 0.96996 * 119.99489 * 359.72897 * 13 11 10 32 32 H 1.08998 * 109.47368 * 294.81443 * 14 13 11 33 33 H 1.09006 * 109.47092 * 54.81197 * 14 13 11 34 34 H 1.09002 * 114.20236 * 254.43360 * 17 15 14 35 35 H 1.09001 * 114.20700 * 27.25723 * 17 15 14 36 36 H 1.09002 * 113.50587 * 219.18691 * 18 17 15 37 37 H 1.09002 * 113.41613 * 88.75385 * 18 17 15 38 38 H 1.09004 * 109.47035 * 299.99440 * 22 20 19 39 39 H 1.09004 * 109.47155 * 59.99772 * 22 20 19 40 40 H 1.07996 * 127.05160 * 180.15656 * 25 24 23 41 41 H 1.07998 * 127.05514 * 179.77361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7907 -5.5023 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 2.3300 -7.7152 0.0008 15 6 3.4964 -8.6966 -0.1302 16 1 4.2130 -8.3996 -0.8959 17 6 4.1490 -9.0531 1.2125 18 6 4.2272 -10.4583 0.5969 19 7 3.0712 -10.1003 -0.2390 20 6 2.0649 -10.7658 -0.8396 21 8 1.2888 -10.1719 -1.5579 22 6 1.9038 -12.2477 -0.6187 23 7 0.7463 -12.7314 -1.3753 24 7 -0.4545 -12.7857 -0.9180 25 6 -1.2415 -13.2629 -1.8555 26 6 -0.4175 -13.5162 -2.9545 27 7 0.7934 -13.1644 -2.5852 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8906 30 1 3.1242 -3.7315 -0.8894 31 1 3.8006 -6.1836 -0.0039 32 1 1.7990 -7.9043 0.9337 33 1 1.6476 -7.8476 -0.8389 34 1 5.1182 -8.5822 1.3773 35 1 3.4793 -8.9770 2.0692 36 1 4.0176 -11.2569 1.3084 37 1 5.1393 -10.6307 0.0254 38 1 2.8011 -12.7653 -0.9580 39 1 1.7516 -12.4424 0.4430 40 1 -2.3065 -13.4294 -1.7887 41 1 -0.7146 -13.9184 -3.9117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689508996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:05 Heat of formation + Delta-G solvation = 91.823022 kcal Electronic energy + Delta-G solvation = -25617.668745 eV Core-core repulsion = 21663.953232 eV Total energy + Delta-G solvation = -3953.715513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.81368 -41.11235 -39.08383 -38.35256 -34.53326 -34.07985 -32.67527 -32.42179 -31.02730 -30.00807 -28.37826 -27.64368 -25.47636 -23.49493 -23.30358 -23.16100 -21.67440 -20.54614 -19.50273 -18.16646 -17.88607 -17.81726 -16.86953 -16.53075 -16.14656 -15.84597 -15.52466 -15.22955 -15.07896 -14.80020 -14.65927 -14.64877 -13.99557 -13.89695 -13.42984 -13.29552 -13.05337 -12.82414 -12.55663 -12.48366 -12.08298 -11.90886 -11.75819 -11.10797 -11.06928 -11.06508 -11.01322 -10.74967 -10.57628 -10.54236 -9.80408 -9.60559 -9.42509 -9.31558 -9.07340 -8.91224 -8.21737 -6.49219 -6.20969 -3.91537 1.33448 1.77125 2.00413 2.25587 2.30140 3.06534 3.10638 3.21892 3.28839 3.33552 3.60769 3.72154 3.79890 3.81022 4.20676 4.32167 4.33797 4.41449 4.49377 4.63386 4.73835 4.77697 4.79243 5.02287 5.12796 5.14098 5.16647 5.22786 5.48358 5.63352 5.68742 5.70392 5.89284 5.91166 5.96512 6.13027 6.30240 6.54404 7.08406 7.53167 7.60263 7.67094 8.03873 8.35965 8.61322 9.24196 10.86521 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.001919 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.031869 B =14583.896085 C =15670.321506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.736 5.736 14 C 0.115 3.885 15 C 0.128 3.872 16 H 0.103 0.897 17 C -0.150 4.150 18 C 0.097 3.903 19 N -0.642 5.642 20 C 0.528 3.472 21 O -0.505 6.505 22 C 0.133 3.867 23 N -0.149 5.149 24 N -0.280 5.280 25 C -0.021 4.021 26 C -0.022 4.022 27 N -0.284 5.284 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.200 0.800 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -30.093 1.320 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.317 3.683 12 O -0.386 6.386 13 N -0.392 5.392 14 C -0.010 4.010 15 C 0.024 3.976 16 H 0.121 0.879 17 C -0.188 4.188 18 C -0.026 4.026 19 N -0.381 5.381 20 C 0.314 3.686 21 O -0.378 6.378 22 C 0.009 3.991 23 N -0.049 5.049 24 N -0.120 5.120 25 C -0.204 4.204 26 C -0.205 4.205 27 N -0.124 5.124 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.217 0.783 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.897 -29.689 1.533 31.332 hybrid contribution 1.662 1.009 -0.644 2.048 sum 11.559 -28.680 0.889 30.934 Atomic orbital electron populations 1.70036 1.05958 1.27343 1.46890 1.25011 0.95043 0.99072 0.94580 0.86103 0.79542 0.81860 0.77893 1.19625 1.20578 1.20570 1.22905 0.94930 0.91624 1.58855 0.90854 1.85471 1.04897 0.96339 1.96703 1.23517 1.06587 0.95183 1.04941 1.20334 0.86518 0.86210 0.75206 1.90733 1.15389 1.85490 1.47004 1.45816 1.09882 1.05050 1.78461 1.21410 0.95435 0.80529 1.03629 1.22932 0.95351 0.82054 0.97246 0.87919 1.23623 1.02742 0.95616 0.96826 1.23121 0.88357 0.98886 0.92231 1.49582 1.25872 1.09779 1.52833 1.20053 0.80675 0.88385 0.79450 1.90872 1.42828 1.68574 1.35572 1.21513 0.86428 0.92916 0.98284 1.47281 1.06035 1.43876 1.07671 1.74078 0.91751 1.18109 1.28085 1.24834 1.01659 1.03358 0.90578 1.24818 0.88416 1.05259 1.02033 1.74034 1.25726 1.14457 0.98170 0.92229 0.89135 0.89183 0.76886 0.91256 0.89898 0.88317 0.87914 0.89695 0.88895 0.84638 0.84468 0.78345 0.78388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.85 16 11 C 0.53 10.23 7.85 -10.98 -0.09 10.15 16 12 O -0.51 -12.38 15.86 5.55 0.09 -12.29 16 13 N -0.74 -9.82 5.55 -60.29 -0.33 -10.16 16 14 C 0.11 1.47 5.47 -4.04 -0.02 1.45 16 15 C 0.13 0.99 4.06 -72.39 -0.29 0.70 16 16 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.15 -0.60 8.02 -26.16 -0.21 -0.81 16 18 C 0.10 0.27 8.42 -8.44 -0.07 0.20 16 19 N -0.64 -4.94 3.57 -177.23 -0.63 -5.57 16 20 C 0.53 5.70 8.02 -10.99 -0.09 5.61 16 21 O -0.51 -8.40 16.03 5.55 0.09 -8.31 16 22 C 0.13 0.98 6.85 -5.19 -0.04 0.95 16 23 N -0.15 -1.67 3.44 -11.66 -0.04 -1.71 16 24 N -0.28 -3.36 12.05 30.67 0.37 -2.99 16 25 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 26 C -0.02 -0.20 12.20 -17.21 -0.21 -0.41 16 27 N -0.28 -3.28 12.05 30.68 0.37 -2.91 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.40 3.73 8.48 -40.82 -0.35 3.38 16 32 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 33 H 0.08 1.42 7.14 -51.93 -0.37 1.05 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.10 0.49 7.95 -51.93 -0.41 0.08 16 36 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -43.32 376.27 -7.04 -50.36 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.31 Total: -0.48 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.81 Total: 1.50 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.47 Total: -49.07 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.18 Total: -20.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -43.32 -7.04 -50.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.188 kcal (2) G-P(sol) polarization free energy of solvation -43.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds