Wall clock time and date at job start Tue Mar 31 2020 22:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 120.00313 * 2 1 4 4 H 1.48507 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47292 * 299.99811 * 3 2 1 6 6 H 1.48496 * 109.47133 * 59.99731 * 3 2 1 7 7 C 1.38805 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99888 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99921 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47152 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99975 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99831 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46947 * 174.81003 * 14 13 11 16 16 H 1.09003 * 112.73915 * 314.98271 * 15 14 13 17 17 C 1.53491 * 113.46745 * 85.73118 * 15 14 13 18 18 C 1.53613 * 83.30866 * 140.83108 * 17 15 14 19 19 N 1.47067 * 113.46548 * 184.24322 * 15 14 13 20 20 C 1.34770 * 136.06434 * 38.06611 * 19 15 14 21 21 O 1.21285 * 119.99471 * 5.03333 * 20 19 15 22 22 C 1.50696 * 120.00586 * 185.03422 * 20 19 15 23 23 N 1.46503 * 109.47364 * 180.02562 * 22 20 19 24 24 N 1.28608 * 124.61541 * 269.70020 * 23 22 20 25 25 C 1.31378 * 108.71758 * 179.83076 * 24 23 22 26 26 C 1.39676 * 105.90022 * 0.41007 * 25 24 23 27 27 N 1.28593 * 124.61953 * 89.99719 * 23 22 20 28 28 H 0.97001 * 119.99284 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.46556 * 59.99945 * 10 9 7 30 30 H 1.08994 * 109.47141 * 299.99900 * 10 9 7 31 31 H 0.96996 * 119.99489 * 359.72897 * 13 11 10 32 32 H 1.08998 * 109.47368 * 294.81443 * 14 13 11 33 33 H 1.09006 * 109.47092 * 54.81197 * 14 13 11 34 34 H 1.09002 * 114.20236 * 254.43360 * 17 15 14 35 35 H 1.09001 * 114.20700 * 27.25723 * 17 15 14 36 36 H 1.09002 * 113.50587 * 219.18691 * 18 17 15 37 37 H 1.09002 * 113.41613 * 88.75385 * 18 17 15 38 38 H 1.09004 * 109.47035 * 299.99440 * 22 20 19 39 39 H 1.09004 * 109.47155 * 59.99772 * 22 20 19 40 40 H 1.07996 * 127.05160 * 180.15656 * 25 24 23 41 41 H 1.07998 * 127.05514 * 179.77361 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3963 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7907 -5.5023 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 2.3300 -7.7152 0.0008 15 6 3.4964 -8.6966 -0.1302 16 1 4.2130 -8.3996 -0.8959 17 6 4.1490 -9.0531 1.2125 18 6 4.2272 -10.4583 0.5969 19 7 3.0712 -10.1003 -0.2390 20 6 2.0649 -10.7658 -0.8396 21 8 1.2888 -10.1719 -1.5579 22 6 1.9038 -12.2477 -0.6187 23 7 0.7463 -12.7314 -1.3753 24 7 -0.4545 -12.7857 -0.9180 25 6 -1.2415 -13.2629 -1.8555 26 6 -0.4175 -13.5162 -2.9545 27 7 0.7934 -13.1644 -2.5852 28 1 -0.4849 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8906 30 1 3.1242 -3.7315 -0.8894 31 1 3.8006 -6.1836 -0.0039 32 1 1.7990 -7.9043 0.9337 33 1 1.6476 -7.8476 -0.8389 34 1 5.1182 -8.5822 1.3773 35 1 3.4793 -8.9770 2.0692 36 1 4.0176 -11.2569 1.3084 37 1 5.1393 -10.6307 0.0254 38 1 2.8011 -12.7653 -0.9580 39 1 1.7516 -12.4424 0.4430 40 1 -2.3065 -13.4294 -1.7887 41 1 -0.7146 -13.9184 -3.9117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689508996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:05 Heat of formation + Delta-G solvation = 55.497275 kcal Electronic energy + Delta-G solvation = -25619.243948 eV Core-core repulsion = 21663.953232 eV Total energy + Delta-G solvation = -3955.290716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.52590 -41.77270 -40.54046 -39.17776 -35.84145 -34.80829 -34.59729 -33.43375 -31.98046 -31.19087 -29.01736 -28.66842 -27.64317 -24.24592 -23.89675 -23.86263 -22.34329 -21.97937 -20.27654 -19.82805 -18.73363 -18.58280 -17.93950 -17.75652 -17.13873 -16.89616 -16.74841 -16.57525 -16.32327 -15.97718 -15.69186 -15.35277 -15.28372 -14.96572 -14.71644 -14.50070 -14.04860 -13.78764 -13.56745 -13.42129 -13.17655 -12.99132 -12.91155 -12.62822 -12.61189 -12.49122 -11.85200 -11.77953 -11.65416 -11.37134 -11.35071 -11.17213 -11.06612 -10.32979 -10.28614 -10.22579 -9.93632 -8.70099 -8.35881 -6.15047 0.62870 1.14911 1.23994 1.28943 1.41345 1.44793 1.53471 1.56303 1.56920 1.72874 2.25619 2.29970 2.98432 3.10076 3.24958 3.30003 3.37469 3.65269 3.88111 3.91350 3.93959 3.97149 3.99267 4.12179 4.27958 4.37125 4.47418 4.48216 4.55527 4.62736 4.69011 4.86101 5.01472 5.02543 5.23793 5.29713 5.32643 5.41015 5.63153 6.19029 6.42980 6.49415 6.81721 7.05115 7.18455 7.30872 8.73811 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.001919 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.031869 B =14583.896085 C =15670.321506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.009 3.991 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.087 0.913 9 S -0.162 6.162 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.572 6.572 13 N -0.703 5.703 14 C 0.121 3.879 15 C 0.120 3.880 16 H 0.122 0.878 17 C -0.136 4.136 18 C 0.103 3.897 19 N -0.643 5.643 20 C 0.519 3.481 21 O -0.581 6.581 22 C 0.131 3.869 23 N -0.159 5.159 24 N -0.315 5.315 25 C -0.027 4.027 26 C -0.025 4.025 27 N -0.311 5.311 28 H 0.271 0.729 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.422 0.578 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.229 0.771 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.734 -31.239 2.164 35.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.690 4.690 8 H 0.105 0.895 9 S 0.065 5.935 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.359 5.359 14 C -0.004 4.004 15 C 0.016 3.984 16 H 0.139 0.861 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.379 5.379 20 C 0.307 3.693 21 O -0.461 6.461 22 C 0.008 3.992 23 N -0.059 5.059 24 N -0.156 5.156 25 C -0.210 4.210 26 C -0.208 4.208 27 N -0.151 5.151 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.245 0.755 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 14.159 -30.883 2.424 34.060 hybrid contribution 0.416 1.262 -0.904 1.607 sum 14.575 -29.621 1.520 33.048 Atomic orbital electron populations 1.70213 1.08119 1.28556 1.48114 1.26209 0.96004 1.03560 0.93755 0.84847 0.78686 0.76029 0.78002 1.17674 1.20117 1.19901 1.23236 0.95423 0.91642 1.58712 0.89511 1.85742 1.10982 0.99702 1.97081 1.23336 1.03422 0.93467 1.07290 1.20255 0.86153 0.87012 0.74924 1.90722 1.18000 1.86194 1.50087 1.45435 1.10501 1.04185 1.75755 1.21374 0.97161 0.81071 1.00836 1.23202 0.93494 0.80976 1.00749 0.86060 1.23632 1.03437 0.96287 0.93950 1.23489 0.87229 0.99085 0.91888 1.49824 1.26261 1.09902 1.51955 1.20729 0.80372 0.89664 0.78522 1.90835 1.45764 1.70287 1.39170 1.21902 0.86920 0.90652 0.99756 1.47621 1.06482 1.44050 1.07773 1.74021 0.92719 1.19283 1.29532 1.25449 1.02976 1.02345 0.90224 1.25457 0.87749 1.04397 1.03173 1.73978 1.27013 1.15365 0.98768 0.92033 0.86298 0.86912 0.73940 0.92553 0.94876 0.85031 0.88721 0.86794 0.85941 0.81167 0.81682 0.75491 0.75195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.16 13.22 21.65 0.29 -56.88 16 2 C 0.01 0.52 5.49 84.86 0.47 0.99 16 3 Si 1.00 43.86 29.55 68.60 2.03 45.88 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.20 9.50 67.96 0.65 -30.55 16 8 H 0.09 4.57 7.80 -2.91 -0.02 4.55 16 9 S -0.16 -9.26 20.57 -56.49 -1.16 -10.42 16 10 C -0.12 -4.95 6.16 71.24 0.44 -4.51 16 11 C 0.53 20.69 7.85 87.66 0.69 21.37 16 12 O -0.57 -29.18 15.86 -3.06 -0.05 -29.22 16 13 N -0.70 -18.15 5.55 -463.05 -2.57 -20.72 16 14 C 0.12 3.17 5.47 86.38 0.47 3.64 16 15 C 0.12 1.62 4.06 41.79 0.17 1.79 16 16 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.14 -0.54 8.02 30.97 0.25 -0.29 16 18 C 0.10 0.12 8.42 83.22 0.70 0.82 16 19 N -0.64 -8.79 3.57 -833.02 -2.97 -11.76 16 20 C 0.52 11.25 8.02 87.66 0.70 11.95 16 21 O -0.58 -20.75 16.03 -3.04 -0.05 -20.80 16 22 C 0.13 1.79 6.85 85.63 0.59 2.38 16 23 N -0.16 -3.58 3.44 -190.79 -0.66 -4.24 16 24 N -0.32 -7.71 12.05 -56.87 -0.69 -8.40 16 25 C -0.03 -0.51 12.20 85.11 1.04 0.53 16 26 C -0.02 -0.45 12.20 85.11 1.04 0.59 16 27 N -0.31 -7.19 12.05 -56.86 -0.69 -7.88 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 31 H 0.42 6.68 8.48 -92.71 -0.79 5.90 16 32 H 0.06 1.62 7.89 -2.39 -0.02 1.60 16 33 H 0.03 1.23 7.14 -2.38 -0.02 1.21 16 34 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.09 0.61 7.95 -2.39 -0.02 0.59 16 36 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.12 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.17 0.96 8.14 -2.38 -0.02 0.95 16 39 H 0.17 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.23 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.23 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -104.65 376.27 0.96 -103.68 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.28 Total: 12.04 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.20 Total: 8.70 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -7.28 Total: -109.87 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.10 Total: -50.02 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.16 Total: -10.42 kcal Total: -104.65 0.96 -103.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689508996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.181 kcal (2) G-P(sol) polarization free energy of solvation -104.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds