Wall clock time and date at job start Tue Mar 31 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00241 * 2 1 4 4 H 1.48491 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47022 * 300.00700 * 3 2 1 6 6 H 1.48502 * 109.47041 * 60.00008 * 3 2 1 7 7 C 1.38796 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 N 1.46503 * 109.46979 * 179.97438 * 19 17 16 21 21 C 1.34426 * 126.82359 * 124.70530 * 20 19 17 22 22 N 1.30825 * 108.07923 * 179.89124 * 21 20 19 23 23 C 1.33246 * 109.82801 * 0.38380 * 22 21 20 24 24 N 1.30709 * 108.94391 * 359.76113 * 23 22 21 25 25 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 26 26 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 27 27 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 29 29 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 30 30 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 32 32 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 34 34 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 35 35 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 36 36 H 1.08003 * 125.96131 * 0.04058 * 21 20 19 37 37 H 1.07997 * 125.53080 * 179.72328 * 23 22 21 38 38 H 1.09001 * 117.50020 * 359.97438 * 25 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 25 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 26 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3303 -7.7151 -0.0058 15 6 3.4953 -8.6965 0.1376 16 7 4.1485 -9.0890 -1.1137 17 6 3.4664 -9.7950 -2.0372 18 8 2.3433 -10.1837 -1.7957 19 6 4.0996 -10.1014 -3.3701 20 7 3.1629 -10.8745 -4.1894 21 6 2.7281 -10.5664 -5.4235 22 7 1.9064 -11.5078 -5.8112 23 6 1.7856 -12.4253 -4.8525 24 7 2.5361 -12.0814 -3.8391 25 6 3.4012 -9.7476 1.2453 26 6 4.3733 -8.5734 1.3845 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7314 0.8895 29 1 3.1245 -3.7314 -0.8905 30 1 3.8009 -6.1835 -0.0006 31 1 1.6391 -7.8475 0.8264 32 1 1.8094 -7.9042 -0.9445 33 1 5.0718 -8.8408 -1.2774 34 1 4.3441 -9.1690 -3.8791 35 1 5.0099 -10.6805 -3.2153 36 1 3.0099 -9.6952 -5.9962 37 1 1.1674 -13.3093 -4.9042 38 1 2.5096 -9.7396 1.8723 39 1 3.8256 -10.7311 1.0434 40 1 5.4369 -8.7848 1.2740 41 1 4.1213 -7.7929 2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689569998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:47 Heat of formation + Delta-G solvation = 58.728017 kcal Electronic energy + Delta-G solvation = -25782.762154 eV Core-core repulsion = 21827.611534 eV Total energy + Delta-G solvation = -3955.150620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36982 -40.55253 -39.13378 -37.78258 -34.42508 -34.01997 -33.29687 -32.45684 -31.47725 -29.81987 -28.58605 -26.49378 -25.45053 -23.37337 -22.88633 -22.29107 -21.45866 -20.35542 -20.17062 -18.08246 -17.85994 -17.71594 -16.88412 -16.45922 -16.22137 -15.66017 -15.45330 -15.21322 -15.01370 -14.83348 -14.65934 -14.50458 -14.04047 -13.94946 -13.34685 -13.21250 -13.06016 -12.82332 -12.57714 -12.18409 -11.97493 -11.83110 -11.34654 -11.09766 -11.05111 -10.91439 -10.78886 -10.59745 -10.31638 -10.06219 -9.89441 -9.84164 -9.64627 -9.33894 -9.10785 -8.94174 -8.25827 -6.53175 -6.24430 -3.95329 1.26867 1.77648 2.06918 2.48659 2.72262 2.85572 3.05728 3.19044 3.19225 3.27610 3.37160 3.73637 3.87891 4.02744 4.06642 4.17229 4.18592 4.35441 4.42966 4.50086 4.55387 4.90941 5.03117 5.10723 5.14499 5.20619 5.41788 5.49642 5.59339 5.67433 5.81682 5.83803 5.87419 6.05185 6.08177 6.13172 6.37352 6.51950 6.89770 7.56657 7.64269 7.68891 7.78249 8.32315 8.56761 9.20813 10.83005 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.002155 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.709774 B =12991.438934 C =14051.115692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.156 3.844 15 C 0.086 3.914 16 N -0.698 5.698 17 C 0.501 3.499 18 O -0.492 6.492 19 C 0.113 3.887 20 N -0.373 5.373 21 C 0.258 3.742 22 N -0.543 5.543 23 C 0.195 3.805 24 N -0.292 5.292 25 C -0.156 4.156 26 C -0.164 4.164 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.397 0.603 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.220 0.780 37 H 0.217 0.783 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.421 -22.546 -4.714 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.388 6.388 13 N -0.392 5.392 14 C 0.031 3.969 15 C -0.002 4.002 16 N -0.352 5.352 17 C 0.285 3.715 18 O -0.364 6.364 19 C -0.014 4.014 20 N -0.164 5.164 21 C -0.039 4.039 22 N -0.270 5.270 23 C -0.108 4.108 24 N -0.118 5.118 25 C -0.195 4.195 26 C -0.201 4.201 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.236 0.764 37 H 0.233 0.767 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.325 -23.461 -4.179 27.303 hybrid contribution 3.061 1.742 -0.145 3.525 sum 16.386 -21.719 -4.324 27.548 Atomic orbital electron populations 1.70029 1.05957 1.27384 1.46827 1.25005 0.95035 0.99066 0.94551 0.86111 0.79527 0.81878 0.77930 1.19642 1.20558 1.20552 1.22894 0.94899 0.91617 1.58940 0.90891 1.85467 1.04863 0.96348 1.96705 1.23516 1.06576 0.95314 1.04832 1.20341 0.86542 0.86249 0.75263 1.90725 1.15384 1.85549 1.47185 1.46013 1.09842 1.05169 1.78188 1.20879 0.93056 0.79342 1.03635 1.20792 0.98059 1.00906 0.80430 1.45229 1.15842 1.56793 1.17352 1.20468 0.86977 0.78580 0.85519 1.90852 1.18225 1.48891 1.78400 1.21548 0.91613 0.97471 0.90772 1.49970 1.35196 1.18027 1.13251 1.26133 0.92980 0.99591 0.85170 1.70548 1.20368 1.04514 1.31520 1.26040 0.98360 0.99665 0.86775 1.78170 1.13551 0.97416 1.22672 1.23370 1.01872 0.94509 0.99718 1.23383 0.97433 1.01841 0.97481 0.92199 0.89229 0.89323 0.76981 0.90084 0.90799 0.76126 0.84920 0.86357 0.76351 0.76678 0.87513 0.88113 0.87847 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 11 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 12 O -0.51 -11.82 15.85 5.56 0.09 -11.73 16 13 N -0.74 -9.21 5.43 -60.30 -0.33 -9.54 16 14 C 0.16 1.91 5.66 -4.04 -0.02 1.88 16 15 C 0.09 0.69 1.74 -131.82 -0.23 0.46 16 16 N -0.70 -4.16 5.45 -47.60 -0.26 -4.42 16 17 C 0.50 4.28 7.55 -10.98 -0.08 4.19 16 18 O -0.49 -6.90 14.94 5.56 0.08 -6.82 16 19 C 0.11 0.54 7.03 -5.19 -0.04 0.51 16 20 N -0.37 -3.29 3.41 -63.81 -0.22 -3.51 16 21 C 0.26 2.10 12.63 -90.66 -1.14 0.95 16 22 N -0.54 -5.88 11.19 -15.83 -0.18 -6.06 16 23 C 0.19 2.05 13.03 -91.81 -1.20 0.85 16 24 N -0.29 -3.42 11.82 29.29 0.35 -3.08 16 25 C -0.16 -1.20 10.11 -26.69 -0.27 -1.47 16 26 C -0.16 -0.95 9.91 -26.69 -0.26 -1.22 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 29 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 30 H 0.40 3.61 8.35 -40.82 -0.34 3.26 16 31 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 32 H 0.07 1.12 7.15 -51.93 -0.37 0.75 16 33 H 0.40 0.88 8.83 -40.82 -0.36 0.52 16 34 H 0.13 0.13 8.09 -51.92 -0.42 -0.29 16 35 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.22 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.11 0.87 8.04 -51.93 -0.42 0.45 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -42.10 378.83 -9.42 -51.51 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.25 Total: 0.71 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.91 Total: 0.24 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.10 Total: -51.87 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -42.10 -9.42 -51.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689569998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.240 kcal (2) G-P(sol) polarization free energy of solvation -42.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds