Wall clock time and date at job start Tue Mar 31 2020 22:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86805 * 120.00241 * 2 1 4 4 H 1.48491 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47022 * 300.00700 * 3 2 1 6 6 H 1.48502 * 109.47041 * 60.00008 * 3 2 1 7 7 C 1.38796 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00270 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00096 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99951 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99834 * 180.27682 * 13 11 10 15 15 C 1.53002 * 109.46733 * 185.67649 * 14 13 11 16 16 N 1.46501 * 115.55223 * 273.09788 * 15 14 13 17 17 C 1.34775 * 119.99941 * 294.92154 * 16 15 14 18 18 O 1.21280 * 120.00457 * 354.97181 * 17 16 15 19 19 C 1.50706 * 119.99768 * 174.97829 * 17 16 15 20 20 N 1.46503 * 109.46979 * 179.97438 * 19 17 16 21 21 C 1.34426 * 126.82359 * 124.70530 * 20 19 17 22 22 N 1.30825 * 108.07923 * 179.89124 * 21 20 19 23 23 C 1.33246 * 109.82801 * 0.38380 * 22 21 20 24 24 N 1.30709 * 108.94391 * 359.76113 * 23 22 21 25 25 C 1.52997 * 117.49607 * 127.43073 * 15 14 13 26 26 C 1.53006 * 117.49872 * 58.77296 * 15 14 13 27 27 H 0.97005 * 120.00052 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46872 * 60.00071 * 10 9 7 29 29 H 1.08997 * 109.47195 * 300.00160 * 10 9 7 30 30 H 0.97006 * 119.99784 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47040 * 305.67696 * 14 13 11 32 32 H 1.09005 * 109.47179 * 65.68394 * 14 13 11 33 33 H 0.97002 * 119.99720 * 114.91682 * 16 15 14 34 34 H 1.09009 * 109.46694 * 299.99294 * 19 17 16 35 35 H 1.08996 * 109.47155 * 59.99387 * 19 17 16 36 36 H 1.08003 * 125.96131 * 0.04058 * 21 20 19 37 37 H 1.07997 * 125.53080 * 179.72328 * 23 22 21 38 38 H 1.09001 * 117.50020 * 359.97438 * 25 15 14 39 39 H 1.09004 * 117.50183 * 145.01814 * 25 15 14 40 40 H 1.09001 * 117.49685 * 214.97588 * 26 15 14 41 41 H 1.08996 * 117.49655 * 359.96848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3303 -7.7151 -0.0058 15 6 3.4953 -8.6965 0.1376 16 7 4.1485 -9.0890 -1.1137 17 6 3.4664 -9.7950 -2.0372 18 8 2.3433 -10.1837 -1.7957 19 6 4.0996 -10.1014 -3.3701 20 7 3.1629 -10.8745 -4.1894 21 6 2.7281 -10.5664 -5.4235 22 7 1.9064 -11.5078 -5.8112 23 6 1.7856 -12.4253 -4.8525 24 7 2.5361 -12.0814 -3.8391 25 6 3.4012 -9.7476 1.2453 26 6 4.3733 -8.5734 1.3845 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7314 0.8895 29 1 3.1245 -3.7314 -0.8905 30 1 3.8009 -6.1835 -0.0006 31 1 1.6391 -7.8475 0.8264 32 1 1.8094 -7.9042 -0.9445 33 1 5.0718 -8.8408 -1.2774 34 1 4.3441 -9.1690 -3.8791 35 1 5.0099 -10.6805 -3.2153 36 1 3.0099 -9.6952 -5.9962 37 1 1.1674 -13.3093 -4.9042 38 1 2.5096 -9.7396 1.8723 39 1 3.8256 -10.7311 1.0434 40 1 5.4369 -8.7848 1.2740 41 1 4.1213 -7.7929 2.1024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689569998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:47 Heat of formation + Delta-G solvation = 26.201806 kcal Electronic energy + Delta-G solvation = -25784.172597 eV Core-core repulsion = 21827.611534 eV Total energy + Delta-G solvation = -3956.561062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.01126 -41.32653 -40.41473 -38.60135 -35.28686 -35.02189 -34.57708 -33.93830 -32.16598 -31.29895 -29.13816 -27.88137 -27.31748 -24.01998 -23.50425 -22.92214 -22.08547 -21.74360 -20.91156 -19.84404 -18.57607 -18.34097 -17.92029 -17.56888 -17.18239 -16.87671 -16.61467 -16.43539 -16.08635 -15.87446 -15.75343 -15.36657 -15.15206 -14.73117 -14.60682 -14.43877 -14.35671 -13.73818 -13.58025 -13.35184 -13.15421 -12.90928 -12.79437 -12.59250 -12.49067 -11.99853 -11.70861 -11.62418 -11.30059 -11.15592 -11.03498 -10.99760 -10.77898 -10.51654 -10.26109 -10.22745 -10.13076 -8.67212 -8.34115 -6.12645 0.64910 1.26296 1.29213 1.42494 1.46689 1.47909 1.57814 1.58259 1.93148 2.04107 2.11668 2.27824 2.77671 3.00412 3.32067 3.35261 3.51851 3.53696 3.68238 3.75308 3.85242 4.00408 4.07074 4.13265 4.29671 4.38374 4.42558 4.50731 4.54165 4.70163 4.71631 4.94665 5.14515 5.24287 5.31491 5.41575 5.42929 5.45859 5.84847 6.20753 6.43812 6.48482 7.07296 7.10682 7.17956 7.22185 8.75340 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014674 B = 0.002155 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.709774 B =12991.438934 C =14051.115692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.086 0.914 9 S -0.160 6.160 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.571 6.571 13 N -0.702 5.702 14 C 0.162 3.838 15 C 0.075 3.925 16 N -0.677 5.677 17 C 0.495 3.505 18 O -0.557 6.557 19 C 0.110 3.890 20 N -0.377 5.377 21 C 0.261 3.739 22 N -0.579 5.579 23 C 0.183 3.817 24 N -0.332 5.332 25 C -0.168 4.168 26 C -0.129 4.129 27 H 0.270 0.730 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.419 0.581 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.427 0.573 34 H 0.180 0.820 35 H 0.152 0.848 36 H 0.264 0.736 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.120 -21.810 -4.985 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.689 4.689 8 H 0.105 0.895 9 S 0.067 5.933 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.357 5.357 14 C 0.037 3.963 15 C -0.014 4.014 16 N -0.332 5.332 17 C 0.280 3.720 18 O -0.433 6.433 19 C -0.014 4.014 20 N -0.168 5.168 21 C -0.035 4.035 22 N -0.307 5.307 23 C -0.120 4.120 24 N -0.159 5.159 25 C -0.207 4.207 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.257 0.743 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.266 0.734 34 H 0.197 0.803 35 H 0.169 0.831 36 H 0.279 0.721 37 H 0.249 0.751 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.156 0.844 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.158 -22.735 -4.439 29.433 hybrid contribution 1.642 1.415 -0.037 2.167 sum 19.800 -21.320 -4.476 29.438 Atomic orbital electron populations 1.70204 1.08089 1.28514 1.48186 1.26171 0.95959 1.03478 0.93826 0.84880 0.78743 0.76211 0.77944 1.17649 1.20106 1.20128 1.23227 0.95396 0.91703 1.58569 0.89549 1.85731 1.10927 0.99605 1.97066 1.23335 1.03383 0.93656 1.07161 1.20211 0.86163 0.86891 0.75005 1.90718 1.17884 1.86178 1.50136 1.45640 1.10326 1.04163 1.75585 1.20742 0.94685 0.79716 1.01183 1.20475 0.98205 1.00580 0.82119 1.45030 1.16588 1.55541 1.16068 1.21213 0.86280 0.77588 0.86879 1.90841 1.21157 1.51574 1.79750 1.22023 0.91166 0.99609 0.88627 1.50166 1.35373 1.17412 1.13858 1.26978 0.91533 0.99831 0.85119 1.70526 1.22026 1.05629 1.32495 1.26469 0.98514 1.00380 0.86639 1.78065 1.14776 0.99371 1.23712 1.23383 1.02493 0.95326 0.99488 1.23505 0.98587 0.99950 0.94589 0.92076 0.86691 0.86816 0.74303 0.92120 0.93940 0.73356 0.80304 0.83059 0.72071 0.75088 0.88913 0.87724 0.84409 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.57 5.49 84.86 0.47 1.03 16 3 Si 1.00 42.68 29.55 68.60 2.03 44.71 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.16 9.50 67.95 0.65 -29.51 16 8 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 10 C -0.12 -4.64 6.16 71.24 0.44 -4.20 16 11 C 0.53 19.09 7.85 87.66 0.69 19.78 16 12 O -0.57 -27.15 15.85 -3.02 -0.05 -27.20 16 13 N -0.70 -16.30 5.43 -463.07 -2.51 -18.81 16 14 C 0.16 3.94 5.66 86.38 0.49 4.43 16 15 C 0.07 1.07 1.74 3.61 0.01 1.07 16 16 N -0.68 -6.05 5.45 -422.91 -2.31 -8.36 16 17 C 0.49 7.61 7.55 87.66 0.66 8.27 16 18 O -0.56 -15.94 14.94 -3.03 -0.05 -15.98 16 19 C 0.11 0.71 7.03 85.63 0.60 1.31 16 20 N -0.38 -6.09 3.41 -355.79 -1.21 -7.30 16 21 C 0.26 3.82 12.63 180.36 2.28 6.10 16 22 N -0.58 -12.46 11.19 -204.01 -2.28 -14.74 16 23 C 0.18 3.97 13.03 180.76 2.36 6.33 16 24 N -0.33 -7.88 11.82 -61.25 -0.72 -8.60 16 25 C -0.17 -2.37 10.11 30.62 0.31 -2.07 16 26 C -0.13 -1.03 9.91 30.62 0.30 -0.73 16 27 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 28 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 30 H 0.42 6.00 8.35 -92.70 -0.77 5.23 16 31 H 0.06 1.74 7.87 -2.39 -0.02 1.72 16 32 H 0.04 1.34 7.15 -2.38 -0.02 1.32 16 33 H 0.43 -0.20 8.83 -92.71 -0.82 -1.01 16 34 H 0.18 -0.57 8.09 -2.38 -0.02 -0.59 16 35 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.26 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.23 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.14 0.24 8.14 -2.39 -0.02 0.23 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -99.99 378.83 0.76 -99.23 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -0.50 Total: 10.84 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 9.24 Total: 11.80 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -8.75 Total: -113.42 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.09 Total: -43.19 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.16 Total: -9.96 kcal Total: -99.99 0.76 -99.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689569998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.429 kcal (2) G-P(sol) polarization free energy of solvation -99.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds