Wall clock time and date at job start Tue Mar 31 2020 22:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99626 * 3 2 1 5 5 H 1.48493 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99995 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.47249 * 180.02562 * 19 17 16 21 21 C 1.34423 * 126.82630 * 125.00341 * 20 19 17 22 22 N 1.30830 * 108.07950 * 179.97438 * 21 20 19 23 23 C 1.33246 * 109.82632 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94732 * 359.75363 * 23 22 21 25 25 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 26 26 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 27 27 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 29 29 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 30 30 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 31 31 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 32 32 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 33 33 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 34 34 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 35 35 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 36 36 H 1.08001 * 125.96431 * 359.97438 * 21 20 19 37 37 H 1.07999 * 125.52133 * 180.02562 * 23 22 21 38 38 H 1.09005 * 117.49674 * 359.97438 * 25 14 13 39 39 H 1.09001 * 117.50250 * 145.01693 * 25 14 13 40 40 H 1.08994 * 117.50200 * 214.97932 * 26 14 13 41 41 H 1.09002 * 117.49893 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 7 1.7882 -6.9769 6.1535 21 6 2.2807 -7.4842 7.2968 22 7 1.3091 -7.5313 8.1718 23 6 0.1867 -7.0642 7.6264 24 7 0.4308 -6.7069 6.3930 25 6 3.1299 -8.8166 -0.5967 26 6 1.7878 -8.3588 -1.1731 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.7988 -6.1853 -0.0704 31 1 0.6037 -7.7494 1.3848 32 1 1.6947 -9.1420 1.5812 33 1 3.1339 -6.8704 2.3549 34 1 3.5371 -7.1318 5.0068 35 1 2.5604 -5.6754 4.7011 36 1 3.3004 -7.7981 7.4640 37 1 -0.7687 -6.9887 8.1243 38 1 4.0334 -8.5240 -1.1318 39 1 3.1638 -9.7941 -0.1155 40 1 0.9392 -9.0352 -1.0708 41 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689616809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:50 Heat of formation + Delta-G solvation = 59.805411 kcal Electronic energy + Delta-G solvation = -26295.479578 eV Core-core repulsion = 22340.375678 eV Total energy + Delta-G solvation = -3955.103901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18508 -40.30777 -39.31752 -37.40343 -34.44843 -34.20134 -32.92457 -32.48406 -31.30471 -29.30568 -28.94058 -26.52228 -25.54324 -22.91385 -22.48909 -22.10500 -21.61065 -20.68837 -19.76063 -18.01587 -17.83545 -17.58568 -16.71268 -16.42849 -16.05451 -15.58319 -15.27050 -15.14673 -14.86010 -14.78290 -14.54591 -14.26330 -14.10543 -13.69211 -13.62688 -13.38084 -12.88062 -12.69959 -12.48753 -12.16813 -11.96745 -11.79152 -11.15631 -11.10718 -11.08420 -10.83999 -10.57733 -10.44794 -10.14239 -9.88949 -9.88732 -9.70551 -9.54933 -9.22690 -9.12900 -9.07056 -8.31136 -6.57161 -6.26944 -3.98779 1.48397 1.98039 2.32408 2.71166 2.87682 2.91687 2.96623 3.18760 3.21271 3.25081 3.42624 3.53197 4.11934 4.14473 4.15794 4.27848 4.34128 4.51791 4.68233 4.71028 4.73539 5.00718 5.08158 5.10311 5.27400 5.29192 5.34610 5.57274 5.67393 5.73591 5.75960 5.83595 5.99891 6.05126 6.10190 6.32044 6.50384 6.56009 7.18205 7.50860 7.53396 7.91919 7.96666 8.28636 8.47991 9.18000 10.80284 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008215 B = 0.003277 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.714809 B = 8543.506529 C =11211.814288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.499 6.499 13 N -0.713 5.713 14 C 0.090 3.910 15 C 0.157 3.843 16 N -0.717 5.717 17 C 0.502 3.498 18 O -0.510 6.510 19 C 0.111 3.889 20 N -0.369 5.369 21 C 0.251 3.749 22 N -0.546 5.546 23 C 0.190 3.810 24 N -0.282 5.282 25 C -0.170 4.170 26 C -0.160 4.160 27 H 0.270 0.730 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.400 0.600 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.101 -18.462 5.957 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.090 0.910 9 S 0.171 5.829 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.370 6.370 13 N -0.369 5.369 14 C 0.001 3.999 15 C 0.032 3.968 16 N -0.371 5.371 17 C 0.285 3.715 18 O -0.384 6.384 19 C -0.016 4.016 20 N -0.161 5.161 21 C -0.046 4.046 22 N -0.273 5.273 23 C -0.113 4.113 24 N -0.108 5.108 25 C -0.207 4.207 26 C -0.199 4.199 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.235 0.765 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.668 -18.929 5.917 22.063 hybrid contribution 3.139 1.673 -0.379 3.577 sum 12.807 -17.256 5.538 22.191 Atomic orbital electron populations 1.70001 1.05964 1.27687 1.46446 1.24992 0.95018 0.99041 0.94451 0.86230 0.79257 0.81273 0.78776 1.19933 1.20758 1.19931 1.22809 0.94812 0.91668 1.59442 0.91003 1.85509 1.04453 0.96236 1.96717 1.23535 1.06800 0.95256 1.04820 1.20391 0.86644 0.85970 0.75106 1.90734 1.15229 1.85240 1.45828 1.45483 1.09930 1.03496 1.77965 1.20677 1.03378 0.82322 0.93491 1.21054 0.97561 0.96218 0.81985 1.45651 1.30138 1.54252 1.07030 1.20349 0.85531 0.81808 0.83781 1.90811 1.23405 1.40785 1.83370 1.21572 0.95017 1.03899 0.81117 1.49967 1.07894 1.47444 1.10750 1.26038 1.00627 0.95709 0.82200 1.70516 0.99405 1.24931 1.32414 1.26048 0.98618 0.97053 0.89541 1.78310 0.91566 1.23187 1.17781 1.23450 0.96430 0.97751 1.03106 1.23326 0.96913 1.02614 0.97031 0.92034 0.89340 0.89270 0.76458 0.89465 0.90694 0.76450 0.85196 0.85870 0.76542 0.76689 0.88060 0.87651 0.87789 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.67 16 10 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 11 C 0.53 8.75 7.70 -10.98 -0.08 8.67 16 12 O -0.50 -10.51 15.38 5.56 0.09 -10.43 16 13 N -0.71 -7.54 4.44 -47.61 -0.21 -7.75 16 14 C 0.09 0.87 1.97 -131.82 -0.26 0.61 16 15 C 0.16 1.75 5.43 -4.04 -0.02 1.73 16 16 N -0.72 -7.13 5.40 -60.30 -0.33 -7.45 16 17 C 0.50 6.02 7.87 -10.99 -0.09 5.94 16 18 O -0.51 -8.66 15.75 5.55 0.09 -8.58 16 19 C 0.11 0.91 7.03 -5.19 -0.04 0.88 16 20 N -0.37 -4.24 3.40 -63.81 -0.22 -4.46 16 21 C 0.25 2.37 12.63 -90.66 -1.14 1.23 16 22 N -0.55 -6.67 11.19 -15.83 -0.18 -6.84 16 23 C 0.19 2.44 13.03 -91.81 -1.20 1.24 16 24 N -0.28 -4.27 11.84 29.29 0.35 -3.92 16 25 C -0.17 -1.11 10.11 -26.70 -0.27 -1.38 16 26 C -0.16 -1.51 10.18 -26.69 -0.27 -1.78 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.44 8.14 -51.91 -0.42 1.01 16 29 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.40 2.90 8.83 -40.82 -0.36 2.54 16 31 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 32 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 33 H 0.40 2.91 7.78 -40.82 -0.32 2.59 16 34 H 0.13 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.22 2.03 8.06 -52.49 -0.42 1.60 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.55 8.06 -51.93 -0.42 0.14 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -41.45 378.81 -9.42 -50.87 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.26 Total: 3.72 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.95 Total: 1.95 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.15 Total: -55.50 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -41.45 -9.42 -50.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689616809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.674 kcal (2) G-P(sol) polarization free energy of solvation -41.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds