Wall clock time and date at job start Tue Mar 31 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99638 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99626 * 3 2 1 5 5 H 1.48493 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47456 * 119.99995 * 3 2 1 7 7 C 1.38797 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00330 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00030 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47187 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00106 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99984 * 175.46218 * 13 11 10 15 15 C 1.52999 * 115.54616 * 294.47958 * 14 13 11 16 16 N 1.46497 * 109.47461 * 324.38868 * 15 14 13 17 17 C 1.34774 * 120.00202 * 174.51904 * 16 15 14 18 18 O 1.21287 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.47249 * 180.02562 * 19 17 16 21 21 C 1.34423 * 126.82630 * 125.00341 * 20 19 17 22 22 N 1.30830 * 108.07950 * 179.97438 * 21 20 19 23 23 C 1.33246 * 109.82632 * 359.97438 * 22 21 20 24 24 N 1.30709 * 108.94732 * 359.75363 * 23 22 21 25 25 C 1.52993 * 117.49990 * 148.80951 * 14 13 11 26 26 C 1.52999 * 117.49914 * 80.14739 * 14 13 11 27 27 H 0.96995 * 120.00197 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47401 * 60.00125 * 10 9 7 29 29 H 1.08999 * 109.47705 * 299.99752 * 10 9 7 30 30 H 0.97001 * 120.00110 * 355.18850 * 13 11 10 31 31 H 1.09005 * 109.46957 * 84.39267 * 15 14 13 32 32 H 1.08997 * 109.47016 * 204.38643 * 15 14 13 33 33 H 0.97002 * 120.00165 * 354.52474 * 16 15 14 34 34 H 1.09003 * 109.47601 * 300.00164 * 19 17 16 35 35 H 1.09002 * 109.47102 * 60.00570 * 19 17 16 36 36 H 1.08001 * 125.96431 * 359.97438 * 21 20 19 37 37 H 1.07999 * 125.52133 * 180.02562 * 23 22 21 38 38 H 1.09005 * 117.49674 * 359.97438 * 25 14 13 39 39 H 1.09001 * 117.50250 * 145.01693 * 25 14 13 40 40 H 1.08994 * 117.50200 * 214.97932 * 26 14 13 41 41 H 1.09002 * 117.49893 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3338 -7.7126 0.1018 15 6 1.6465 -8.0647 1.4225 16 7 2.3248 -7.3779 2.5245 17 6 1.8247 -7.4510 3.7738 18 8 0.8133 -8.0859 3.9860 19 6 2.5229 -6.7450 4.9074 20 7 1.7882 -6.9769 6.1535 21 6 2.2807 -7.4842 7.2968 22 7 1.3091 -7.5313 8.1718 23 6 0.1867 -7.0642 7.6264 24 7 0.4308 -6.7069 6.3930 25 6 3.1299 -8.8166 -0.5967 26 6 1.7878 -8.3588 -1.1731 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8906 29 1 3.1246 -3.7313 -0.8894 30 1 3.7988 -6.1853 -0.0704 31 1 0.6037 -7.7494 1.3848 32 1 1.6947 -9.1420 1.5812 33 1 3.1339 -6.8704 2.3549 34 1 3.5371 -7.1318 5.0068 35 1 2.5604 -5.6754 4.7011 36 1 3.3004 -7.7981 7.4640 37 1 -0.7687 -6.9887 8.1243 38 1 4.0334 -8.5240 -1.1318 39 1 3.1638 -9.7941 -0.1155 40 1 0.9392 -9.0352 -1.0708 41 1 1.8080 -7.7648 -2.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689616809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:49 Heat of formation + Delta-G solvation = 28.010473 kcal Electronic energy + Delta-G solvation = -26296.858310 eV Core-core repulsion = 22340.375678 eV Total energy + Delta-G solvation = -3956.482633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00959 -41.31320 -40.38941 -38.46422 -35.37532 -35.00790 -34.58999 -34.07324 -32.18011 -30.54525 -29.92751 -27.68046 -27.32437 -23.64372 -23.35986 -22.89276 -22.64859 -21.60520 -20.80703 -19.84811 -18.78274 -18.38439 -17.77430 -17.57359 -16.94174 -16.88152 -16.55307 -16.39048 -16.21518 -15.92334 -15.56047 -15.33798 -15.04444 -14.85803 -14.55814 -14.51102 -14.38781 -13.69051 -13.59858 -13.42856 -13.16794 -12.86933 -12.78673 -12.63341 -12.41570 -11.98936 -11.76775 -11.46973 -11.35438 -11.13063 -11.02068 -10.84678 -10.79733 -10.58741 -10.25424 -10.22718 -10.05842 -8.66897 -8.34803 -6.12938 0.69345 1.24684 1.29050 1.43127 1.43952 1.46356 1.54570 1.61899 1.97753 2.05038 2.21548 2.27831 2.72477 2.99687 3.29955 3.46986 3.52336 3.53214 3.67816 3.85047 3.87579 4.03121 4.06853 4.11844 4.32224 4.39801 4.47099 4.51576 4.57851 4.73599 4.76342 4.99816 5.19702 5.22251 5.23175 5.41028 5.46132 5.53948 5.88616 6.18884 6.39271 6.51802 7.06634 7.08622 7.13144 7.29422 8.73923 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008215 B = 0.003277 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3407.714809 B = 8543.506529 C =11211.814288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.128 4.128 11 C 0.537 3.463 12 O -0.554 6.554 13 N -0.682 5.682 14 C 0.070 3.930 15 C 0.161 3.839 16 N -0.704 5.704 17 C 0.494 3.506 18 O -0.570 6.570 19 C 0.111 3.889 20 N -0.378 5.378 21 C 0.267 3.733 22 N -0.575 5.575 23 C 0.185 3.815 24 N -0.346 5.346 25 C -0.117 4.117 26 C -0.183 4.183 27 H 0.270 0.730 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.423 0.577 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.416 0.584 34 H 0.196 0.804 35 H 0.129 0.871 36 H 0.275 0.725 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.255 -19.279 6.071 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.337 5.337 14 C -0.018 4.018 15 C 0.036 3.964 16 N -0.357 5.357 17 C 0.280 3.720 18 O -0.448 6.448 19 C -0.014 4.014 20 N -0.169 5.169 21 C -0.029 4.029 22 N -0.303 5.303 23 C -0.118 4.118 24 N -0.173 5.173 25 C -0.155 4.155 26 C -0.222 4.222 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.254 0.746 34 H 0.213 0.787 35 H 0.147 0.853 36 H 0.290 0.710 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.935 -19.761 6.000 25.486 hybrid contribution 1.607 1.767 -0.452 2.431 sum 16.542 -17.994 5.549 25.064 Atomic orbital electron populations 1.70191 1.08106 1.28598 1.48114 1.26138 0.95884 1.03421 0.93825 0.85022 0.77790 0.75712 0.79608 1.18502 1.20826 1.18449 1.23175 0.95383 0.91889 1.58705 0.89570 1.85766 1.10816 0.99485 1.97061 1.23367 1.03386 0.94064 1.07082 1.20116 0.86274 0.86453 0.74854 1.90740 1.17704 1.85850 1.48734 1.45050 1.10311 1.02776 1.75574 1.20743 1.05885 0.82289 0.92916 1.20882 0.95112 0.97089 0.83332 1.45556 1.30188 1.53710 1.06276 1.21116 0.84894 0.81046 0.84977 1.90790 1.26054 1.43582 1.84338 1.21966 0.96878 1.03982 0.78600 1.50109 1.06910 1.47696 1.12197 1.27122 1.02022 0.92987 0.80728 1.70525 0.99869 1.26195 1.33711 1.26456 0.99722 0.96422 0.89221 1.78205 0.94484 1.25506 1.19101 1.23591 0.95288 0.96842 0.99737 1.23372 0.99417 1.03230 0.96198 0.92134 0.86587 0.87145 0.73780 0.94871 0.89107 0.74608 0.78715 0.85344 0.71008 0.75179 0.85565 0.85309 0.88083 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.08 13.22 21.65 0.29 -55.79 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.54 -30.02 9.50 67.95 0.65 -29.37 16 8 H 0.09 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.16 -8.52 20.57 -56.49 -1.16 -9.68 16 10 C -0.13 -4.49 6.16 71.24 0.44 -4.06 16 11 C 0.54 17.30 7.70 87.66 0.68 17.98 16 12 O -0.55 -24.35 15.38 -3.02 -0.05 -24.39 16 13 N -0.68 -12.70 4.44 -422.92 -1.88 -14.58 16 14 C 0.07 1.22 1.97 3.60 0.01 1.22 16 15 C 0.16 3.57 5.43 86.38 0.47 4.04 16 16 N -0.70 -12.97 5.40 -463.07 -2.50 -15.46 16 17 C 0.49 11.56 7.87 87.65 0.69 12.25 16 18 O -0.57 -20.15 15.75 -3.05 -0.05 -20.20 16 19 C 0.11 1.55 7.03 85.63 0.60 2.16 16 20 N -0.38 -8.21 3.40 -355.81 -1.21 -9.42 16 21 C 0.27 4.38 12.63 180.36 2.28 6.66 16 22 N -0.58 -13.60 11.19 -204.01 -2.28 -15.88 16 23 C 0.18 4.89 13.03 180.76 2.36 7.24 16 24 N -0.35 -10.82 11.84 -61.25 -0.72 -11.54 16 25 C -0.12 -1.04 10.11 30.62 0.31 -0.73 16 26 C -0.18 -3.24 10.18 30.62 0.31 -2.93 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 30 H 0.42 4.23 8.83 -92.71 -0.82 3.41 16 31 H 0.03 1.11 7.90 -2.38 -0.02 1.09 16 32 H 0.09 1.70 7.91 -2.39 -0.02 1.68 16 33 H 0.42 4.74 7.78 -92.71 -0.72 4.02 16 34 H 0.20 0.03 8.09 -2.39 -0.02 0.01 16 35 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.27 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.23 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.13 0.67 8.06 -2.39 -0.02 0.65 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -100.74 378.81 1.26 -99.48 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.45 Total: 17.21 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 9.25 Total: 15.59 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -8.31 Total: -122.69 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.09 Total: -44.59 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -100.74 1.26 -99.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689616809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.491 kcal (2) G-P(sol) polarization free energy of solvation -100.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds