Wall clock time and date at job start Tue Mar 31 2020 22:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31237 * 124.05747 * 2 1 4 4 N 1.27333 * 120.03902 * 180.33831 * 3 2 1 5 5 S 1.56634 * 109.73957 * 359.71380 * 4 3 2 6 6 C 1.38247 * 124.05592 * 179.82646 * 2 1 3 7 7 C 1.47171 * 128.47515 * 0.02562 * 6 2 1 8 8 O 1.21625 * 119.99954 * 359.69656 * 7 6 2 9 9 N 1.34772 * 120.00154 * 179.70143 * 7 6 2 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.90684 * 336.24748 * 10 9 7 12 12 C 1.54049 * 113.61276 * 107.61836 * 10 9 7 13 13 C 1.53781 * 87.08031 * 89.07129 * 12 10 9 14 14 H 1.08999 * 113.61181 * 270.87794 * 13 12 10 15 15 N 1.46897 * 113.69238 * 139.98787 * 13 12 10 16 16 C 1.46895 * 111.00139 * 107.46230 * 15 13 12 17 17 C 1.50704 * 109.47267 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00061 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99844 * 180.02562 * 17 16 15 20 20 C 1.37094 * 119.99491 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00690 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99723 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00232 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00226 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47297 * 59.99637 * 24 22 20 26 26 H 1.48499 * 109.47725 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47018 * 299.99956 * 24 22 20 28 28 C 1.53781 * 87.08070 * 25.42738 * 13 12 10 29 29 H 1.08995 * 109.46841 * 270.17191 * 1 2 3 30 30 H 1.08996 * 109.46731 * 30.17217 * 1 2 3 31 31 H 1.09000 * 109.46630 * 150.17406 * 1 2 3 32 32 H 0.97002 * 120.00078 * 359.97438 * 9 7 6 33 33 H 1.09005 * 113.62125 * 334.52173 * 12 10 9 34 34 H 1.09003 * 113.61268 * 203.61961 * 12 10 9 35 35 H 1.00898 * 111.00002 * 343.50890 * 15 13 12 36 36 H 1.08996 * 109.47524 * 300.00070 * 16 15 13 37 37 H 1.09004 * 109.47112 * 59.99978 * 16 15 13 38 38 H 0.97002 * 120.00090 * 359.97438 * 19 17 16 39 39 H 0.96998 * 120.00166 * 179.97438 * 23 22 20 40 40 H 1.09002 * 113.61445 * 89.11830 * 28 13 12 41 41 H 1.09002 * 113.61408 * 219.93560 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9980 -0.0065 5 16 3.9367 -0.5097 -0.0062 6 6 2.2813 -1.1454 0.0035 7 6 1.8395 -2.5492 0.0072 8 8 0.6522 -2.8131 0.0131 9 7 2.7505 -3.5424 0.0042 10 6 2.3107 -4.9398 0.0074 11 1 1.3085 -5.0683 0.4162 12 6 2.5272 -5.6579 -1.3382 13 6 3.9239 -6.0395 -0.8201 14 1 4.6913 -5.2999 -1.0484 15 7 4.3290 -7.4079 -1.1682 16 6 5.3649 -7.4015 -2.2097 17 6 5.7548 -8.8194 -2.5394 18 8 5.2217 -9.7444 -1.9637 19 7 6.6958 -9.0596 -3.4739 20 6 7.0500 -10.3496 -3.7741 21 1 6.5753 -11.1732 -3.2616 22 6 8.0197 -10.5973 -4.7380 23 7 8.5969 -9.5952 -5.3621 24 14 8.5019 -12.3548 -5.1477 25 1 7.3109 -13.0932 -5.6390 26 1 9.5497 -12.3484 -6.1999 27 1 9.0289 -13.0204 -3.9292 28 6 3.3465 -5.9103 0.5993 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3632 -0.8916 -0.5111 32 1 3.6974 -3.3320 -0.0008 33 1 2.5482 -4.9838 -2.1946 34 1 1.8682 -6.5132 -1.4877 35 1 3.5334 -7.9592 -1.4531 36 1 4.9779 -6.9134 -3.1041 37 1 6.2391 -6.8591 -1.8493 38 1 7.1218 -8.3199 -3.9346 39 1 9.2741 -9.7681 -6.0347 40 1 2.9115 -6.8345 0.9796 41 1 4.0295 -5.4412 1.3075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690264397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:17 Heat of formation + Delta-G solvation = 25.679558 kcal Electronic energy + Delta-G solvation = -25504.024379 eV Core-core repulsion = 21547.440670 eV Total energy + Delta-G solvation = -3956.583709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48203 -40.53724 -38.88018 -38.02248 -34.78590 -33.92437 -33.76509 -32.63462 -31.22761 -29.01831 -27.44148 -26.88345 -25.90867 -24.64290 -23.57120 -22.59336 -20.99068 -19.97731 -19.21729 -18.95520 -17.98889 -17.85818 -16.63286 -16.53805 -16.14647 -15.55043 -15.24268 -15.10530 -14.78042 -14.57872 -14.52581 -14.14709 -13.81403 -13.54476 -13.46489 -13.17314 -12.93495 -12.88133 -12.69200 -12.24480 -12.05112 -11.90645 -11.63668 -11.48489 -11.08574 -10.95370 -10.86769 -10.62480 -10.50645 -10.46564 -10.36386 -10.23976 -10.22240 -9.53971 -9.52995 -8.50060 -8.08851 -7.99146 -6.44771 -3.85740 -0.78589 0.29311 0.95507 1.43657 2.41693 2.45092 3.17931 3.23961 3.28229 3.38033 3.86874 4.03316 4.04414 4.13718 4.23443 4.30697 4.42258 4.69810 4.79581 4.83973 5.11072 5.13980 5.22870 5.25239 5.32602 5.51013 5.54264 5.60968 5.69675 5.71982 5.75485 5.85148 5.93967 6.12968 6.25663 6.82905 7.15111 7.17390 7.52128 7.53224 7.58517 8.02756 8.57682 9.14585 9.50675 10.01945 10.72791 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.001812 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.383971 B =15445.857510 C =16268.332609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.106 3.894 3 N -0.251 5.251 4 N -0.249 5.249 5 S 0.421 5.579 6 C -0.299 4.299 7 C 0.607 3.393 8 O -0.511 6.511 9 N -0.702 5.702 10 C 0.119 3.881 11 H 0.110 0.890 12 C -0.180 4.180 13 C 0.066 3.934 14 H 0.094 0.906 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.132 4.132 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.353 0.647 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.105 0.895 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 20.056 10.312 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 N -0.117 5.117 4 N -0.229 5.229 5 S 0.557 5.443 6 C -0.439 4.439 7 C 0.391 3.609 8 O -0.387 6.387 9 N -0.353 5.353 10 C 0.013 3.987 11 H 0.128 0.872 12 C -0.220 4.220 13 C -0.045 4.045 14 H 0.112 0.888 15 N -0.287 5.287 16 C -0.083 4.083 17 C 0.224 3.776 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.171 4.171 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.235 0.765 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.174 0.826 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.470 20.280 11.046 25.356 hybrid contribution -0.543 -0.502 -1.418 1.600 sum -11.012 19.778 9.628 24.600 Atomic orbital electron populations 1.20563 0.83620 1.05172 1.04504 1.23005 1.00314 0.84964 0.95885 1.70644 0.96876 1.27938 1.16227 1.78909 1.09470 1.15578 1.18978 1.82619 1.09505 1.01649 1.50530 1.27733 0.98325 0.99902 1.17988 1.16387 0.85952 0.81884 0.76711 1.90829 1.15712 1.82971 1.49172 1.45562 1.09209 1.05829 1.74663 1.21925 1.00125 0.78588 0.98028 0.87171 1.24269 0.99199 1.01172 0.97401 1.23119 0.94385 0.91240 0.95767 0.88816 1.60006 1.15181 1.09949 1.43565 1.21719 0.96087 0.97036 0.93456 1.19821 0.84145 0.89837 0.83756 1.90524 1.56801 1.45309 1.54172 1.41862 1.34696 1.08953 1.34439 1.19655 1.19450 0.84429 1.19460 0.87953 1.25269 0.96585 0.99644 0.96442 1.69601 1.27280 1.31211 1.26219 0.85910 0.78236 0.81863 0.78168 1.19904 1.20975 1.19866 1.23486 0.97145 0.99119 0.97318 0.89153 0.89722 0.87958 0.76478 0.91092 0.88414 0.82598 0.93815 0.89640 0.77471 0.91798 0.87671 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.89 36.01 0.36 -0.18 16 2 C 0.11 0.93 7.00 -82.84 -0.58 0.35 16 3 N -0.25 -2.53 11.54 33.42 0.39 -2.15 16 4 N -0.25 -2.38 12.51 60.35 0.75 -1.62 16 5 S 0.42 2.72 23.05 -107.50 -2.48 0.24 16 6 C -0.30 -2.42 6.80 -35.95 -0.24 -2.66 16 7 C 0.61 5.42 7.80 -12.64 -0.10 5.32 16 8 O -0.51 -5.89 14.50 5.26 0.08 -5.81 16 9 N -0.70 -5.06 5.26 -54.03 -0.28 -5.34 16 10 C 0.12 0.96 4.34 -66.97 -0.29 0.67 16 11 H 0.11 0.97 7.46 -51.93 -0.39 0.59 16 12 C -0.18 -1.62 7.51 -25.78 -0.19 -1.81 16 13 C 0.07 0.66 4.06 -66.90 -0.27 0.39 16 14 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 15 N -0.66 -9.49 6.24 -107.14 -0.67 -10.16 16 16 C 0.05 0.81 6.01 -4.98 -0.03 0.78 16 17 C 0.44 10.03 7.82 -10.98 -0.09 9.94 16 18 O -0.58 -15.46 15.78 5.55 0.09 -15.37 16 19 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 20 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.13 -1.11 7.62 -25.92 -0.20 -1.30 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.77 6.47 -51.93 -0.34 0.43 16 32 H 0.40 2.06 8.13 -40.82 -0.33 1.73 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.90 7.83 -51.93 -0.41 0.49 16 35 H 0.35 5.34 7.90 -39.29 -0.31 5.03 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 368.13 15.07 5.55 5.55 Total: -1.00 -33.21 368.13 -7.78 -40.99 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.97 Total: 11.75 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.88 Total: 3.59 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.85 Total: -56.70 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.16 Total: -21.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.48 Total: 0.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.21 -7.78 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690264397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.673 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds