Wall clock time and date at job start Tue Mar 31 2020 22:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31237 * 124.05747 * 2 1 4 4 N 1.27333 * 120.03902 * 180.33831 * 3 2 1 5 5 S 1.56634 * 109.73957 * 359.71380 * 4 3 2 6 6 C 1.38247 * 124.05592 * 179.82646 * 2 1 3 7 7 C 1.47171 * 128.47515 * 0.02562 * 6 2 1 8 8 O 1.21625 * 119.99954 * 359.69656 * 7 6 2 9 9 N 1.34772 * 120.00154 * 179.70143 * 7 6 2 10 10 C 1.46506 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.90684 * 336.24748 * 10 9 7 12 12 C 1.54049 * 113.61276 * 107.61836 * 10 9 7 13 13 C 1.53781 * 87.08031 * 89.07129 * 12 10 9 14 14 H 1.08999 * 113.61181 * 270.87794 * 13 12 10 15 15 N 1.46897 * 113.69238 * 139.98787 * 13 12 10 16 16 C 1.46895 * 111.00139 * 107.46230 * 15 13 12 17 17 C 1.50704 * 109.47267 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00061 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99844 * 180.02562 * 17 16 15 20 20 C 1.37094 * 119.99491 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00690 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99723 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00232 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00226 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47297 * 59.99637 * 24 22 20 26 26 H 1.48499 * 109.47725 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47018 * 299.99956 * 24 22 20 28 28 C 1.53781 * 87.08070 * 25.42738 * 13 12 10 29 29 H 1.08995 * 109.46841 * 270.17191 * 1 2 3 30 30 H 1.08996 * 109.46731 * 30.17217 * 1 2 3 31 31 H 1.09000 * 109.46630 * 150.17406 * 1 2 3 32 32 H 0.97002 * 120.00078 * 359.97438 * 9 7 6 33 33 H 1.09005 * 113.62125 * 334.52173 * 12 10 9 34 34 H 1.09003 * 113.61268 * 203.61961 * 12 10 9 35 35 H 1.00898 * 111.00002 * 343.50890 * 15 13 12 36 36 H 1.08996 * 109.47524 * 300.00070 * 16 15 13 37 37 H 1.09004 * 109.47112 * 59.99978 * 16 15 13 38 38 H 0.97002 * 120.00090 * 359.97438 * 19 17 16 39 39 H 0.96998 * 120.00166 * 179.97438 * 23 22 20 40 40 H 1.09002 * 113.61445 * 89.11830 * 28 13 12 41 41 H 1.09002 * 113.61408 * 219.93560 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9980 -0.0065 5 16 3.9367 -0.5097 -0.0062 6 6 2.2813 -1.1454 0.0035 7 6 1.8395 -2.5492 0.0072 8 8 0.6522 -2.8131 0.0131 9 7 2.7505 -3.5424 0.0042 10 6 2.3107 -4.9398 0.0074 11 1 1.3085 -5.0683 0.4162 12 6 2.5272 -5.6579 -1.3382 13 6 3.9239 -6.0395 -0.8201 14 1 4.6913 -5.2999 -1.0484 15 7 4.3290 -7.4079 -1.1682 16 6 5.3649 -7.4015 -2.2097 17 6 5.7548 -8.8194 -2.5394 18 8 5.2217 -9.7444 -1.9637 19 7 6.6958 -9.0596 -3.4739 20 6 7.0500 -10.3496 -3.7741 21 1 6.5753 -11.1732 -3.2616 22 6 8.0197 -10.5973 -4.7380 23 7 8.5969 -9.5952 -5.3621 24 14 8.5019 -12.3548 -5.1477 25 1 7.3109 -13.0932 -5.6390 26 1 9.5497 -12.3484 -6.1999 27 1 9.0289 -13.0204 -3.9292 28 6 3.3465 -5.9103 0.5993 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3632 -0.8916 -0.5111 32 1 3.6974 -3.3320 -0.0008 33 1 2.5482 -4.9838 -2.1946 34 1 1.8682 -6.5132 -1.4877 35 1 3.5334 -7.9592 -1.4531 36 1 4.9779 -6.9134 -3.1041 37 1 6.2391 -6.8591 -1.8493 38 1 7.1218 -8.3199 -3.9346 39 1 9.2741 -9.7681 -6.0347 40 1 2.9115 -6.8345 0.9796 41 1 4.0295 -5.4412 1.3075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690264397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:16 Heat of formation + Delta-G solvation = -1.041973 kcal Electronic energy + Delta-G solvation = -25505.183112 eV Core-core repulsion = 21547.440670 eV Total energy + Delta-G solvation = -3957.742441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12423 -41.26709 -40.15066 -39.34580 -36.13047 -35.47589 -34.40452 -33.63493 -33.17318 -29.67019 -28.35562 -28.04216 -26.61573 -26.17207 -24.55747 -23.37754 -21.66298 -21.17689 -20.53161 -19.87498 -19.56700 -18.58535 -17.81613 -17.24483 -17.11342 -16.87189 -16.35795 -16.12362 -15.98201 -15.84921 -15.52381 -15.29984 -15.11745 -14.35886 -14.27245 -14.12836 -13.96421 -13.58946 -13.49405 -13.45409 -13.41927 -13.10265 -12.82631 -12.62347 -12.54759 -12.41830 -12.12051 -11.76948 -11.54377 -11.48997 -11.36121 -11.17854 -10.98670 -10.81729 -10.31315 -10.20734 -10.00152 -9.20636 -8.45619 -5.94088 -1.41156 -0.28481 0.35855 0.78525 1.40600 1.42742 1.53282 1.76049 1.78505 2.07586 2.30174 2.77726 2.97910 3.21947 3.42947 3.45675 3.56512 3.61287 3.72905 3.99001 4.09562 4.22027 4.34821 4.53807 4.59178 4.62277 4.66104 4.74740 4.83794 4.85388 4.91497 5.05280 5.14444 5.18156 5.41663 5.45342 5.94990 6.18448 6.22954 6.44461 6.53395 6.61814 6.89905 7.14070 7.58373 8.13769 8.71357 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.001812 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.383971 B =15445.857510 C =16268.332609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.098 3.902 3 N -0.276 5.276 4 N -0.284 5.284 5 S 0.502 5.498 6 C -0.313 4.313 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.691 5.691 10 C 0.128 3.872 11 H 0.104 0.896 12 C -0.176 4.176 13 C 0.063 3.937 14 H 0.113 0.887 15 N -0.670 5.670 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.123 4.123 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.412 0.588 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.346 0.654 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.098 0.902 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 20.805 10.471 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.141 5.141 4 N -0.265 5.265 5 S 0.639 5.361 6 C -0.454 4.454 7 C 0.394 3.606 8 O -0.418 6.418 9 N -0.342 5.342 10 C 0.022 3.978 11 H 0.122 0.878 12 C -0.216 4.216 13 C -0.048 4.048 14 H 0.131 0.869 15 N -0.302 5.302 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.162 4.162 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.166 0.834 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.700 21.079 11.208 25.769 hybrid contribution -0.753 -0.746 -1.425 1.776 sum -10.453 20.333 9.783 24.868 Atomic orbital electron populations 1.20589 0.82800 1.05205 1.05080 1.23279 1.01090 0.84997 0.95677 1.70694 0.97144 1.28782 1.17491 1.78656 1.09611 1.18056 1.20200 1.82236 1.07120 0.99118 1.47671 1.27726 0.99761 0.99407 1.18520 1.16454 0.85670 0.82291 0.76199 1.90819 1.16983 1.83440 1.50584 1.45446 1.09689 1.05185 1.73893 1.21756 0.99853 0.78814 0.97327 0.87808 1.24215 0.98467 1.01124 0.97834 1.23325 0.95283 0.89306 0.96839 0.86899 1.60040 1.14771 1.12577 1.42768 1.21591 0.97649 0.92344 0.95167 1.20999 0.82410 0.92296 0.81970 1.90493 1.57795 1.47611 1.55211 1.41941 1.35601 1.08231 1.35338 1.19621 1.20788 0.85248 1.20709 0.90357 1.26022 0.96008 1.03487 0.95793 1.69658 1.27388 1.32708 1.26317 0.85008 0.78072 0.77292 0.78093 1.19750 1.19562 1.19752 1.23412 0.97135 0.98957 0.96711 0.88301 0.88710 0.88781 0.75045 0.91006 0.88838 0.83389 0.91634 0.87469 0.76943 0.91325 0.88359 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.89 71.24 0.70 -0.30 16 2 C 0.10 1.64 7.00 42.65 0.30 1.93 16 3 N -0.28 -5.39 11.54 -48.18 -0.56 -5.95 16 4 N -0.28 -5.10 12.51 37.02 0.46 -4.63 16 5 S 0.50 5.37 23.05 -56.49 -1.30 4.07 16 6 C -0.31 -4.59 6.80 24.62 0.17 -4.42 16 7 C 0.61 9.92 7.80 86.59 0.68 10.60 16 8 O -0.54 -12.01 14.50 -4.11 -0.06 -12.07 16 9 N -0.69 -8.28 5.26 -443.11 -2.33 -10.61 16 10 C 0.13 1.81 4.34 45.61 0.20 2.01 16 11 H 0.10 1.70 7.46 -2.39 -0.02 1.68 16 12 C -0.18 -2.83 7.51 31.21 0.23 -2.59 16 13 C 0.06 1.09 4.06 45.44 0.18 1.28 16 14 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 15 N -0.67 -18.31 6.24 -492.87 -3.08 -21.39 16 16 C 0.06 2.00 6.01 85.56 0.51 2.51 16 17 C 0.44 19.87 7.82 87.66 0.69 20.55 16 18 O -0.62 -33.62 15.78 -3.06 -0.05 -33.67 16 19 N -0.57 -28.58 5.29 -306.98 -1.62 -30.21 16 20 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 24 Si 0.99 42.31 29.55 68.60 2.03 44.34 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C -0.12 -1.78 7.62 31.12 0.24 -1.54 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.40 6.47 -2.39 -0.02 1.39 16 32 H 0.41 2.88 8.13 -92.71 -0.75 2.13 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.09 1.61 7.83 -2.39 -0.02 1.59 16 35 H 0.35 10.24 7.90 -89.70 -0.71 9.53 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.11 2.88 8.13 -2.38 -0.02 2.86 16 38 H 0.40 18.64 7.90 -92.71 -0.73 17.91 16 39 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -72.42 368.13 -2.12 -74.54 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -1.07 Total: 32.11 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.18 Total: 11.95 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.84 Total: -121.27 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.11 Total: -45.74 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.30 Total: 4.07 kcal Total: -72.42 -2.12 -74.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690264397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.495 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds