Wall clock time and date at job start Tue Mar 31 2020 22:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84655 * 23.80324 * 14 13 11 16 16 C 1.53784 * 113.61177 * 154.99513 * 14 13 11 17 17 C 1.53782 * 87.07761 * 139.98140 * 16 14 13 18 18 H 1.09004 * 113.61217 * 89.11966 * 17 16 14 19 19 N 1.46902 * 113.61340 * 220.01776 * 17 16 14 20 20 C 1.46903 * 110.99795 * 205.00091 * 19 17 16 21 21 C 1.50702 * 109.46867 * 180.02562 * 20 19 17 22 22 C 1.38231 * 119.58844 * 94.72617 * 21 20 19 23 23 C 1.38602 * 119.18735 * 179.77343 * 22 21 20 24 24 C 1.38882 * 118.39725 * 0.49204 * 23 22 21 25 25 F 1.35097 * 120.43840 * 179.77397 * 24 23 22 26 26 C 1.38418 * 119.11287 * 359.75123 * 24 23 22 27 27 N 1.31849 * 119.58956 * 275.00285 * 21 20 19 28 28 C 1.53774 * 113.61320 * 252.49390 * 14 13 11 29 29 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 31 31 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 32 32 H 0.97002 * 119.99660 * 359.97438 * 13 11 10 33 33 H 1.08997 * 113.61798 * 254.53204 * 16 14 13 34 34 H 1.09003 * 113.61509 * 25.35532 * 16 14 13 35 35 H 1.00900 * 111.00324 * 328.95953 * 19 17 16 36 36 H 1.08995 * 109.47350 * 299.99951 * 20 19 17 37 37 H 1.09001 * 109.46729 * 60.00354 * 20 19 17 38 38 H 1.07999 * 120.40704 * 359.97438 * 22 21 20 39 39 H 1.07994 * 120.79712 * 180.22464 * 23 22 21 40 40 H 1.08005 * 119.63546 * 180.02562 * 26 24 23 41 41 H 1.08999 * 113.61927 * 334.57053 * 28 14 13 42 42 H 1.09004 * 113.61390 * 105.47674 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 2.3305 -7.7151 -0.0035 15 1 1.3218 -7.7889 -0.4100 16 6 3.3110 -8.7395 -0.5983 17 6 2.8730 -9.6936 0.5254 18 1 2.0123 -10.3095 0.2644 19 7 3.9784 -10.4707 1.1018 20 6 3.4886 -11.7219 1.6958 21 6 4.6481 -12.4899 2.2761 22 6 4.9563 -12.3510 3.6165 23 6 6.0215 -13.0649 4.1426 24 6 6.7480 -13.8893 3.2932 25 9 7.7970 -14.6003 3.7614 26 6 6.3826 -13.9730 1.9608 27 7 5.3593 -13.2818 1.4979 28 6 2.5098 -8.4410 1.3402 29 1 -0.4850 -0.8401 -0.0004 30 1 3.1252 -3.7309 -0.8909 31 1 3.1238 -3.7317 0.8891 32 1 3.8010 -6.1834 -0.0013 33 1 3.0333 -9.0821 -1.5951 34 1 4.3553 -8.4343 -0.5314 35 1 4.6911 -10.6528 0.4112 36 1 2.7729 -11.4935 2.4854 37 1 3.0025 -12.3229 0.9273 38 1 4.3723 -11.6968 4.2467 39 1 6.2829 -12.9788 5.1869 40 1 6.9414 -14.6118 1.2928 41 1 3.3351 -8.0549 1.9384 42 1 1.5852 -8.5427 1.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690325186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:48 Heat of formation + Delta-G solvation = -30.489926 kcal Electronic energy + Delta-G solvation = -24657.394629 eV Core-core repulsion = 20678.455267 eV Total energy + Delta-G solvation = -3978.939362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.51566 -40.76714 -40.04319 -38.35628 -35.36384 -33.13502 -33.05317 -32.52431 -31.13717 -29.18039 -26.47446 -25.90731 -24.86171 -24.47759 -23.26429 -22.36145 -20.46269 -19.97295 -18.31133 -18.20505 -17.87058 -17.02099 -16.74938 -16.53019 -16.33009 -15.62182 -15.49284 -15.03005 -14.88203 -14.58869 -14.48049 -14.25870 -13.84051 -13.60947 -13.57196 -13.24407 -12.98212 -12.77713 -12.68375 -12.40231 -12.36543 -11.96150 -11.92456 -11.45755 -11.12180 -10.91778 -10.82040 -10.51721 -10.20007 -10.17274 -9.58062 -9.48894 -9.45484 -9.02921 -8.97911 -8.81130 -8.22204 -6.66813 -6.62054 -3.99804 0.29362 0.51085 2.88970 2.97382 2.98560 3.35069 3.38064 3.40272 3.54513 3.58920 3.68743 3.96501 4.05026 4.16895 4.23731 4.26014 4.28300 4.33747 4.66605 4.70481 4.79595 4.91728 5.03628 5.05758 5.20856 5.22643 5.27196 5.29325 5.41618 5.45165 5.47095 5.56134 5.75675 5.79376 5.84252 5.98550 6.01902 6.03705 6.57204 6.63771 6.85740 7.24009 7.65110 7.92063 8.50222 8.52606 9.27265 10.81885 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.001497 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.799054 B =18700.414863 C =19286.446596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.116 6.116 10 C -0.132 4.132 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.127 3.873 15 H 0.114 0.886 16 C -0.149 4.149 17 C 0.061 3.939 18 H 0.080 0.920 19 N -0.669 5.669 20 C 0.108 3.892 21 C 0.121 3.879 22 C -0.119 4.119 23 C -0.109 4.109 24 C 0.046 3.954 25 F -0.130 7.130 26 C 0.076 3.924 27 N -0.454 5.454 28 C -0.137 4.137 29 H 0.278 0.722 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.347 0.653 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.093 0.907 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.692 -29.993 5.173 33.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.283 4.283 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.378 5.378 14 C 0.020 3.980 15 H 0.132 0.868 16 C -0.188 4.188 17 C -0.049 4.049 18 H 0.098 0.902 19 N -0.301 5.301 20 C -0.021 4.021 21 C -0.017 4.017 22 C -0.140 4.140 23 C -0.136 4.136 24 C 0.024 3.976 25 F -0.109 7.109 26 C -0.083 4.083 27 N -0.163 5.163 28 C -0.177 4.177 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.185 0.815 41 H 0.111 0.889 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.260 -28.433 4.889 30.969 hybrid contribution 2.652 -1.970 0.292 3.316 sum 13.912 -30.402 5.181 33.833 Atomic orbital electron populations 1.70802 1.06699 1.30960 1.43336 1.26052 0.96325 1.02126 0.93010 0.83331 0.74761 0.74213 0.76703 1.20273 1.21147 1.21143 1.23708 0.96033 0.92228 1.63645 0.91621 1.84808 1.08155 0.98805 1.97226 1.23329 1.05101 0.94642 1.05229 1.20317 0.86638 0.86368 0.74885 1.90693 1.15395 1.85600 1.47666 1.45913 1.09734 1.05061 1.77056 1.22214 0.98914 0.80055 0.96776 0.86765 1.23627 1.00637 0.96166 0.98330 1.22855 0.93432 0.93301 0.95286 0.90188 1.60643 1.12790 1.18477 1.38199 1.20861 0.92492 0.89218 0.99526 1.21252 0.96002 0.93924 0.90571 1.21949 0.96993 0.98800 0.96223 1.21735 0.95237 0.95473 1.01126 1.18849 0.88313 0.96007 0.94448 1.91536 1.54317 1.76132 1.88923 1.22876 0.94821 0.98477 0.92078 1.67536 1.04792 1.05716 1.38254 1.23589 1.02291 0.94572 0.97270 0.90997 0.88983 0.88949 0.76636 0.90661 0.88867 0.83368 0.88909 0.92810 0.83375 0.83340 0.81528 0.88861 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.53 13.67 55.49 0.76 -26.77 16 2 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 24.92 29.92 -169.99 -5.09 19.84 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.61 -17.56 9.50 30.94 0.29 -17.27 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.13 19.60 -107.50 -2.11 -5.24 16 10 C -0.13 -2.65 6.16 36.01 0.22 -2.43 16 11 C 0.53 9.72 7.85 -10.98 -0.09 9.63 16 12 O -0.52 -11.55 15.46 5.55 0.09 -11.47 16 13 N -0.72 -9.28 5.35 -53.02 -0.28 -9.57 16 14 C 0.13 1.38 4.24 -67.12 -0.28 1.09 16 15 H 0.11 1.45 7.46 -51.93 -0.39 1.07 16 16 C -0.15 -1.14 7.40 -25.92 -0.19 -1.33 16 17 C 0.06 0.45 4.14 -66.90 -0.28 0.17 16 18 H 0.08 0.54 7.87 -51.93 -0.41 0.14 16 19 N -0.67 -4.58 6.55 -107.12 -0.70 -5.28 16 20 C 0.11 0.67 5.84 -4.97 -0.03 0.64 16 21 C 0.12 0.83 6.29 -82.59 -0.52 0.32 16 22 C -0.12 -0.69 9.72 -39.45 -0.38 -1.07 16 23 C -0.11 -0.62 10.17 -39.21 -0.40 -1.02 16 24 C 0.05 0.30 7.34 -39.28 -0.29 0.02 16 25 F -0.13 -0.95 17.28 2.25 0.04 -0.91 16 26 C 0.08 0.51 11.17 -17.47 -0.20 0.32 16 27 N -0.45 -3.56 10.27 -9.42 -0.10 -3.66 16 28 C -0.14 -1.29 7.68 -25.92 -0.20 -1.49 16 29 H 0.28 8.83 7.12 -40.82 -0.29 8.54 16 30 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 32 H 0.40 4.02 8.73 -40.82 -0.36 3.66 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.35 2.39 8.54 -39.29 -0.34 2.06 16 36 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.05 0.34 8.13 -51.93 -0.42 -0.09 16 38 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -35.46 379.11 -9.74 -45.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.63 Total: 3.64 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -2.43 Total: -11.49 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.32 Total: -45.28 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.09 Total: 19.84 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.46 -9.74 -45.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.711 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds