Wall clock time and date at job start Tue Mar 31 2020 22:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99893 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.84655 * 23.80324 * 14 13 11 16 16 C 1.53784 * 113.61177 * 154.99513 * 14 13 11 17 17 C 1.53782 * 87.07761 * 139.98140 * 16 14 13 18 18 H 1.09004 * 113.61217 * 89.11966 * 17 16 14 19 19 N 1.46902 * 113.61340 * 220.01776 * 17 16 14 20 20 C 1.46903 * 110.99795 * 205.00091 * 19 17 16 21 21 C 1.50702 * 109.46867 * 180.02562 * 20 19 17 22 22 C 1.38231 * 119.58844 * 94.72617 * 21 20 19 23 23 C 1.38602 * 119.18735 * 179.77343 * 22 21 20 24 24 C 1.38882 * 118.39725 * 0.49204 * 23 22 21 25 25 F 1.35097 * 120.43840 * 179.77397 * 24 23 22 26 26 C 1.38418 * 119.11287 * 359.75123 * 24 23 22 27 27 N 1.31849 * 119.58956 * 275.00285 * 21 20 19 28 28 C 1.53774 * 113.61320 * 252.49390 * 14 13 11 29 29 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 31 31 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 32 32 H 0.97002 * 119.99660 * 359.97438 * 13 11 10 33 33 H 1.08997 * 113.61798 * 254.53204 * 16 14 13 34 34 H 1.09003 * 113.61509 * 25.35532 * 16 14 13 35 35 H 1.00900 * 111.00324 * 328.95953 * 19 17 16 36 36 H 1.08995 * 109.47350 * 299.99951 * 20 19 17 37 37 H 1.09001 * 109.46729 * 60.00354 * 20 19 17 38 38 H 1.07999 * 120.40704 * 359.97438 * 22 21 20 39 39 H 1.07994 * 120.79712 * 180.22464 * 23 22 21 40 40 H 1.08005 * 119.63546 * 180.02562 * 26 24 23 41 41 H 1.08999 * 113.61927 * 334.57053 * 28 14 13 42 42 H 1.09004 * 113.61390 * 105.47674 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 2.3305 -7.7151 -0.0035 15 1 1.3218 -7.7889 -0.4100 16 6 3.3110 -8.7395 -0.5983 17 6 2.8730 -9.6936 0.5254 18 1 2.0123 -10.3095 0.2644 19 7 3.9784 -10.4707 1.1018 20 6 3.4886 -11.7219 1.6958 21 6 4.6481 -12.4899 2.2761 22 6 4.9563 -12.3510 3.6165 23 6 6.0215 -13.0649 4.1426 24 6 6.7480 -13.8893 3.2932 25 9 7.7970 -14.6003 3.7614 26 6 6.3826 -13.9730 1.9608 27 7 5.3593 -13.2818 1.4979 28 6 2.5098 -8.4410 1.3402 29 1 -0.4850 -0.8401 -0.0004 30 1 3.1252 -3.7309 -0.8909 31 1 3.1238 -3.7317 0.8891 32 1 3.8010 -6.1834 -0.0013 33 1 3.0333 -9.0821 -1.5951 34 1 4.3553 -8.4343 -0.5314 35 1 4.6911 -10.6528 0.4112 36 1 2.7729 -11.4935 2.4854 37 1 3.0025 -12.3229 0.9273 38 1 4.3723 -11.6968 4.2467 39 1 6.2829 -12.9788 5.1869 40 1 6.9414 -14.6118 1.2928 41 1 3.3351 -8.0549 1.9384 42 1 1.5852 -8.5427 1.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690325186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:48 Heat of formation + Delta-G solvation = -56.205526 kcal Electronic energy + Delta-G solvation = -24658.509741 eV Core-core repulsion = 20678.455267 eV Total energy + Delta-G solvation = -3980.054474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02745 -41.30722 -41.02676 -39.48196 -36.08836 -34.74080 -34.20665 -33.52058 -31.80020 -30.60482 -27.17804 -26.97184 -26.58226 -24.93666 -24.10325 -22.87061 -21.75965 -20.84473 -20.29974 -18.68638 -18.35287 -18.02734 -17.77078 -17.40433 -16.88277 -16.66076 -16.51574 -16.12435 -15.99250 -15.71614 -15.39876 -15.10414 -14.93472 -14.81282 -14.47656 -14.13953 -14.09455 -13.89502 -13.86967 -13.45652 -13.36541 -13.16602 -12.88110 -12.72574 -12.24611 -11.95198 -11.92321 -11.57881 -11.51950 -11.08793 -10.97919 -10.96527 -10.67267 -10.31721 -10.05596 -9.95403 -9.42680 -8.91700 -8.85879 -6.26750 -0.17901 0.07059 1.22223 1.52745 1.53146 1.61508 1.81778 2.21847 2.36008 2.49199 2.94794 3.03174 3.13898 3.18798 3.40718 3.51816 3.56678 3.68526 3.77795 3.85122 3.88341 3.94466 4.03380 4.19503 4.30925 4.39184 4.48209 4.54146 4.66840 4.77922 4.80781 4.83821 4.87642 4.99179 5.03141 5.08662 5.14662 5.55243 5.57902 5.65014 6.01896 6.15741 6.32931 6.48373 6.76820 7.07132 7.19766 8.51775 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.001497 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.799054 B =18700.414863 C =19286.446596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.136 2.864 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.615 4.615 8 H 0.075 0.925 9 S -0.196 6.196 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.698 5.698 14 C 0.111 3.889 15 H 0.093 0.907 16 C -0.131 4.131 17 C 0.075 3.925 18 H 0.088 0.912 19 N -0.669 5.669 20 C 0.111 3.889 21 C 0.111 3.889 22 C -0.121 4.121 23 C -0.108 4.108 24 C 0.034 3.966 25 F -0.137 7.137 26 C 0.069 3.931 27 N -0.474 5.474 28 C -0.134 4.134 29 H 0.260 0.740 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.349 0.651 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.093 0.907 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.246 -30.737 5.496 35.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.954 3.046 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.763 4.763 8 H 0.093 0.907 9 S 0.031 5.969 10 C -0.262 4.262 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.351 5.351 14 C 0.005 3.995 15 H 0.111 0.889 16 C -0.170 4.170 17 C -0.035 4.035 18 H 0.105 0.895 19 N -0.301 5.301 20 C -0.018 4.018 21 C -0.027 4.027 22 C -0.141 4.141 23 C -0.135 4.135 24 C 0.012 3.988 25 F -0.115 7.115 26 C -0.090 4.090 27 N -0.183 5.183 28 C -0.173 4.173 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.169 0.831 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.199 0.801 41 H 0.111 0.889 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.875 -29.245 5.212 32.787 hybrid contribution 1.919 -1.905 0.217 2.712 sum 15.794 -31.150 5.429 35.344 Atomic orbital electron populations 1.70921 1.08012 1.29992 1.45893 1.27831 0.96314 1.06371 0.91684 0.82720 0.73940 0.69510 0.78432 1.20544 1.18805 1.18792 1.24048 0.96537 0.92863 1.62811 0.90667 1.85046 1.13269 1.01143 1.97479 1.23247 1.02129 0.93865 1.06993 1.20031 0.86383 0.86664 0.74982 1.90684 1.17406 1.86057 1.50416 1.45703 1.09994 1.04742 1.74630 1.22445 0.99063 0.79203 0.98779 0.88882 1.23552 1.00306 0.94326 0.98822 1.22688 0.93863 0.92766 0.94204 0.89451 1.60582 1.12535 1.18854 1.38146 1.20880 0.92436 0.88789 0.99739 1.21433 0.96146 0.93995 0.91147 1.22165 0.97040 0.98846 0.96017 1.22008 0.94761 0.94674 1.02015 1.18995 0.88518 0.96505 0.94792 1.91519 1.54658 1.76374 1.88982 1.23132 0.94755 0.98546 0.92532 1.67540 1.05416 1.06449 1.38932 1.23541 1.01918 0.95468 0.96417 0.92879 0.87070 0.87094 0.74605 0.89704 0.87540 0.83148 0.87958 0.92904 0.81574 0.81394 0.80124 0.88859 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.11 13.67 21.65 0.30 -57.82 16 2 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 3 Si 1.14 49.16 29.92 68.60 2.05 51.21 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.62 -35.49 9.50 67.95 0.65 -34.85 16 8 H 0.08 4.06 7.80 -2.92 -0.02 4.03 16 9 S -0.20 -10.80 19.60 -56.49 -1.11 -11.90 16 10 C -0.11 -4.34 6.16 71.24 0.44 -3.90 16 11 C 0.53 19.19 7.85 87.66 0.69 19.88 16 12 O -0.57 -25.77 15.46 -3.04 -0.05 -25.82 16 13 N -0.70 -16.63 5.35 -440.04 -2.36 -18.99 16 14 C 0.11 2.24 4.24 45.52 0.19 2.44 16 15 H 0.09 2.36 7.46 -2.39 -0.02 2.34 16 16 C -0.13 -1.66 7.40 31.12 0.23 -1.43 16 17 C 0.08 0.92 4.14 45.44 0.19 1.11 16 18 H 0.09 0.99 7.87 -2.38 -0.02 0.97 16 19 N -0.67 -7.53 6.55 -492.83 -3.23 -10.76 16 20 C 0.11 1.15 5.84 85.56 0.50 1.65 16 21 C 0.11 1.35 6.29 42.56 0.27 1.62 16 22 C -0.12 -1.14 9.72 22.36 0.22 -0.93 16 23 C -0.11 -1.03 10.17 22.51 0.23 -0.80 16 24 C 0.03 0.41 7.34 22.47 0.17 0.58 16 25 F -0.14 -1.88 17.28 44.97 0.78 -1.10 16 26 C 0.07 0.85 11.17 84.73 0.95 1.80 16 27 N -0.47 -6.86 10.27 -183.70 -1.89 -8.75 16 28 C -0.13 -2.29 7.68 31.12 0.24 -2.05 16 29 H 0.26 17.24 7.12 -92.71 -0.66 16.58 16 30 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 31 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 32 H 0.42 7.14 8.73 -92.71 -0.81 6.33 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.11 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.35 3.92 8.54 -89.69 -0.77 3.15 16 36 H 0.10 0.85 8.04 -2.39 -0.02 0.83 16 37 H 0.05 0.57 8.13 -2.39 -0.02 0.55 16 38 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -79.17 379.11 -0.48 -79.65 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.40 Total: 19.79 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.41 Total: -15.52 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -7.17 Total: -96.31 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Atomic # 16 Polarization: -10.80 SS G_CDS: -1.11 Total: -11.90 kcal Total: -79.17 -0.48 -79.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.447 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds