Wall clock time and date at job start Tue Mar 31 2020 22:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 120.00640 * 2 1 4 4 H 1.48497 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47065 * 300.00117 * 3 2 1 6 6 H 1.48496 * 109.46737 * 59.99878 * 3 2 1 7 7 C 1.38957 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99802 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00344 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99892 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47125 * 180.02562 * 12 10 9 14 14 C 1.46908 * 111.00041 * 180.02562 * 13 12 10 15 15 H 1.09006 * 112.85056 * 336.19358 * 14 13 12 16 16 C 1.53779 * 113.69212 * 107.46219 * 14 13 12 17 17 C 1.53784 * 87.08045 * 139.99344 * 16 14 13 18 18 H 1.08994 * 113.61477 * 89.11454 * 17 16 14 19 19 C 1.52997 * 113.61270 * 220.02125 * 17 16 14 20 20 N 1.46498 * 109.47070 * 272.49429 * 19 17 16 21 21 C 1.34783 * 120.00214 * 179.97438 * 20 19 17 22 22 O 1.21570 * 119.99783 * 0.02562 * 21 20 19 23 23 C 1.47747 * 120.00194 * 180.02562 * 21 20 19 24 24 C 1.39351 * 124.11683 * 179.72675 * 23 21 20 25 25 N 1.30094 * 112.14406 * 179.84812 * 24 23 21 26 26 S 1.55925 * 108.75601 * 0.40407 * 25 24 23 27 27 N 1.31496 * 124.11759 * 0.02977 * 23 21 20 28 28 C 1.53779 * 113.61234 * 205.00068 * 14 13 12 29 29 H 0.97005 * 119.99864 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99922 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47653 * 59.99890 * 12 10 9 32 32 H 1.08999 * 109.47465 * 300.00032 * 12 10 9 33 33 H 1.00900 * 111.00257 * 56.04681 * 13 12 10 34 34 H 1.09002 * 113.61557 * 25.44456 * 16 14 13 35 35 H 1.09004 * 113.61501 * 254.53877 * 16 14 13 36 36 H 1.08998 * 109.47573 * 32.49481 * 19 17 16 37 37 H 1.09003 * 109.47157 * 152.50001 * 19 17 16 38 38 H 0.96997 * 120.00287 * 0.02562 * 20 19 17 39 39 H 1.07999 * 123.92748 * 0.02562 * 24 23 21 40 40 H 1.08997 * 113.61646 * 105.38689 * 28 14 13 41 41 H 1.08998 * 113.69354 * 334.48997 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0001 12 6 1.2434 -4.8629 0.0011 13 7 2.1979 -5.9796 0.0016 14 6 1.4975 -7.2709 0.0016 15 1 0.4877 -7.2048 0.4067 16 6 1.5748 -8.0158 -1.3416 17 6 1.7602 -9.3061 -0.5257 18 1 0.8223 -9.7962 -0.2647 19 6 2.7882 -10.2677 -1.1250 20 7 2.1289 -11.1441 -2.0963 21 6 2.8432 -12.0782 -2.7549 22 8 4.0346 -12.1938 -2.5426 23 6 2.1784 -12.9617 -3.7349 24 6 2.8335 -13.9504 -4.4664 25 7 2.0247 -14.5916 -5.2583 26 16 0.5920 -13.9970 -5.1001 27 7 0.8975 -12.9070 -4.0271 28 6 2.3262 -8.4211 0.5975 29 1 -0.4850 0.8401 0.0004 30 1 0.3531 -2.3906 0.0005 31 1 0.6163 -4.9209 -0.8886 32 1 0.6171 -4.9205 0.8913 33 1 2.8328 -5.9122 0.7829 34 1 2.4460 -7.7483 -1.9397 35 1 0.6452 -7.9885 -1.9101 36 1 3.5719 -9.6974 -1.6237 37 1 3.2275 -10.8713 -0.3307 38 1 1.1784 -11.0517 -2.2660 39 1 3.8893 -14.1618 -4.3833 40 1 2.0032 -8.7211 1.5944 41 1 3.4029 -8.2657 0.5304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691083803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:59 Heat of formation + Delta-G solvation = -18.413396 kcal Electronic energy + Delta-G solvation = -25053.682296 eV Core-core repulsion = 21095.186573 eV Total energy + Delta-G solvation = -3958.495723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17641 -40.70471 -40.11304 -39.55604 -36.28556 -35.87566 -34.84790 -34.21849 -33.23787 -29.82180 -28.50266 -27.55339 -26.59768 -25.77078 -24.06577 -22.43085 -21.57739 -21.17192 -20.43229 -20.30645 -19.87082 -18.80564 -17.80723 -17.22656 -17.14556 -16.82841 -16.63630 -16.37153 -16.22087 -16.01952 -15.70396 -15.46572 -15.01428 -14.91001 -14.55331 -14.00283 -13.54460 -13.49716 -13.29697 -13.26952 -13.00975 -12.76955 -12.56129 -12.42624 -12.38780 -12.27549 -12.12155 -12.10750 -11.81369 -11.65211 -11.51670 -11.18040 -11.14918 -10.35797 -10.31595 -10.05777 -10.01792 -9.27416 -8.47319 -5.95991 -0.66287 0.34141 0.44274 0.62338 1.36403 1.41752 1.56020 1.97121 2.01132 2.05213 2.29291 2.98179 3.20134 3.37984 3.49563 3.62236 3.65218 3.82351 3.93152 4.00393 4.02203 4.26080 4.36655 4.46273 4.47723 4.50295 4.60723 4.74028 4.85560 4.94357 4.99305 5.13477 5.22274 5.31899 5.36601 5.40752 5.51840 5.94741 6.21215 6.36989 6.46282 6.60121 6.98692 7.12448 7.56141 8.11669 8.70286 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.001512 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.897614 B =18512.671872 C =18907.133812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.673 5.673 14 C 0.052 3.948 15 H 0.088 0.912 16 C -0.123 4.123 17 C -0.104 4.104 18 H 0.120 0.880 19 C 0.133 3.867 20 N -0.696 5.696 21 C 0.601 3.399 22 O -0.557 6.557 23 C -0.005 4.005 24 C 0.087 3.913 25 N -0.602 5.602 26 S 0.796 5.204 27 N -0.561 5.561 28 C -0.125 4.125 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.345 0.655 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.223 0.777 40 H 0.087 0.913 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -30.232 -6.009 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.306 5.306 14 C -0.058 4.058 15 H 0.105 0.895 16 C -0.162 4.162 17 C -0.123 4.123 18 H 0.138 0.862 19 C 0.010 3.990 20 N -0.347 5.347 21 C 0.382 3.618 22 O -0.435 6.435 23 C -0.178 4.178 24 C -0.105 4.105 25 N -0.444 5.444 26 S 0.837 5.163 27 N -0.413 5.413 28 C -0.164 4.164 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.239 0.761 40 H 0.106 0.894 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.819 -30.652 -7.469 32.081 hybrid contribution 0.870 1.572 1.520 2.353 sum -4.949 -29.080 -5.949 30.092 Atomic orbital electron populations 1.69673 1.06800 1.29236 1.50369 1.26036 0.96560 1.02389 0.96258 0.84867 0.77990 0.77093 0.78355 1.19898 1.19623 1.19479 1.19711 0.92700 0.84116 1.49922 0.90416 1.41947 1.09330 1.04732 1.65080 1.20970 0.88285 0.86278 0.82089 1.90490 1.15960 1.88006 1.56660 1.21582 0.94105 0.88127 1.02834 1.60229 1.18713 1.00687 1.50952 1.23194 0.97436 0.86816 0.98313 0.89452 1.23172 1.02283 0.94387 0.96341 1.22543 0.99415 0.93474 0.96833 0.86185 1.21452 0.95237 0.91352 0.90962 1.45766 1.13666 1.33962 1.41263 1.16948 0.85401 0.79839 0.79644 1.90836 1.15306 1.71202 1.66198 1.22271 0.88522 1.02638 1.04402 1.23889 1.03594 0.91555 0.91474 1.72184 1.10725 1.33235 1.28260 1.78866 1.09162 1.08319 1.19911 1.72270 1.19675 1.28257 1.21141 1.23152 1.00446 0.94165 0.98603 0.91287 0.76954 0.88161 0.91452 0.83585 0.91083 0.90786 0.92099 0.90631 0.74490 0.76115 0.89407 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -19.20 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 10 C 0.44 20.88 7.82 87.66 0.69 21.56 16 11 O -0.62 -35.05 15.78 -3.07 -0.05 -35.10 16 12 C 0.07 2.23 6.01 85.56 0.51 2.74 16 13 N -0.67 -20.59 6.19 -492.84 -3.05 -23.64 16 14 C 0.05 1.07 4.14 45.44 0.19 1.26 16 15 H 0.09 1.58 7.87 -2.38 -0.02 1.56 16 16 C -0.12 -2.31 7.43 31.12 0.23 -2.08 16 17 C -0.10 -1.39 3.76 -10.27 -0.04 -1.43 16 18 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 19 C 0.13 2.12 5.51 86.38 0.48 2.60 16 20 N -0.70 -10.78 5.55 -466.06 -2.59 -13.37 16 21 C 0.60 11.65 7.82 86.76 0.68 12.33 16 22 O -0.56 -14.25 16.81 -3.94 -0.07 -14.32 16 23 C -0.01 -0.09 6.81 41.98 0.29 0.20 16 24 C 0.09 1.25 11.22 85.22 0.96 2.21 16 25 N -0.60 -8.25 11.41 -92.43 -1.05 -9.31 16 26 S 0.80 6.99 23.69 -56.49 -1.34 5.65 16 27 N -0.56 -7.46 11.00 -80.56 -0.89 -8.35 16 28 C -0.13 -2.03 7.21 31.12 0.22 -1.80 16 29 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 30 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 31 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 33 H 0.34 11.12 8.25 -89.69 -0.74 10.39 16 34 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.42 5.06 8.06 -92.71 -0.75 4.31 16 39 H 0.22 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -73.84 370.83 -3.97 -77.80 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -1.11 Total: 37.04 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 5.48 Total: 18.99 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -8.92 Total: -135.21 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.11 Total: -49.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.34 Total: 5.65 kcal Total: -73.84 -3.97 -77.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691083803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.389 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds