Wall clock time and date at job start Tue Mar 31 2020 22:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00054 * 2 1 4 4 H 1.48504 * 109.46748 * 269.99510 * 3 2 1 5 5 H 1.48496 * 109.47390 * 29.99322 * 3 2 1 6 6 H 1.48500 * 109.47324 * 149.99696 * 3 2 1 7 7 C 1.38952 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99988 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46919 * 179.97438 * 12 10 9 14 14 C 1.47838 * 110.99774 * 69.15501 * 13 12 10 15 15 C 1.54906 * 104.79543 * 146.36499 * 14 13 12 16 16 C 1.55145 * 101.65298 * 322.92789 * 15 14 13 17 17 H 1.09000 * 110.85168 * 277.20529 * 16 15 14 18 18 C 1.52990 * 110.70880 * 154.03403 * 16 15 14 19 19 N 1.46509 * 109.47098 * 71.40224 * 18 16 15 20 20 C 1.34770 * 119.99849 * 179.97438 * 19 18 16 21 21 O 1.21628 * 120.00551 * 0.02562 * 20 19 18 22 22 C 1.47177 * 119.99918 * 179.97438 * 20 19 18 23 23 C 1.38247 * 128.47671 * 180.02562 * 22 20 19 24 24 N 1.31234 * 111.88543 * 180.29345 * 23 22 20 25 25 N 1.27339 * 120.03998 * 359.45464 * 24 23 22 26 26 S 1.56636 * 109.73725 * 0.53439 * 25 24 23 27 27 C 1.47438 * 110.99574 * 189.99859 * 13 12 10 28 28 H 0.97001 * 119.99555 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99577 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47211 * 59.99954 * 12 10 9 31 31 H 1.09002 * 109.46989 * 299.99467 * 12 10 9 32 32 H 1.08998 * 110.37416 * 265.18910 * 14 13 12 33 33 H 1.08999 * 110.37689 * 27.42493 * 14 13 12 34 34 H 1.09004 * 110.99304 * 204.83878 * 15 14 13 35 35 H 1.08998 * 110.99706 * 81.01676 * 15 14 13 36 36 H 1.09003 * 109.47327 * 311.40347 * 18 16 15 37 37 H 1.09004 * 109.47410 * 191.40084 * 18 16 15 38 38 H 0.96996 * 119.99513 * 0.02562 * 19 18 16 39 39 H 1.08002 * 124.05342 * 0.02562 * 23 22 20 40 40 H 1.09000 * 109.88457 * 117.33838 * 27 13 12 41 41 H 1.08995 * 110.02576 * 356.22354 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 -0.0005 14 6 2.9159 -6.0636 1.2893 15 6 3.1543 -7.5780 1.5114 16 6 1.8429 -8.1874 0.9494 17 1 1.0491 -8.1551 1.6957 18 6 2.0746 -9.6219 0.4706 19 7 2.2687 -10.4980 1.6287 20 6 2.4902 -11.8150 1.4477 21 8 2.5296 -12.2762 0.3229 22 6 2.6858 -12.6950 2.6110 23 6 2.9230 -14.0569 2.6292 24 7 3.0413 -14.5165 3.8527 25 7 2.9453 -13.7229 4.8439 26 16 2.6739 -12.2677 4.3320 27 6 1.5113 -7.2619 -0.2401 28 1 -0.4849 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0002 30 1 0.6174 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8898 32 1 3.8670 -5.5346 1.2296 33 1 2.3035 -5.6525 2.0918 34 1 3.2670 -7.8043 2.5717 35 1 4.0194 -7.9243 0.9458 36 1 2.9613 -9.6548 -0.1626 37 1 1.2086 -9.9592 -0.0991 38 1 2.2369 -10.1302 2.5257 39 1 2.9973 -14.6697 1.7429 40 1 1.8706 -7.7073 -1.1678 41 1 0.4345 -7.1033 -0.2977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691119037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:01 Heat of formation + Delta-G solvation = 11.932345 kcal Electronic energy + Delta-G solvation = -25588.479773 eV Core-core repulsion = 21631.299940 eV Total energy + Delta-G solvation = -3957.179833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.37959 -40.19622 -39.23424 -37.71304 -35.43569 -33.91762 -32.86122 -32.01379 -31.19278 -29.65455 -28.28282 -27.13132 -25.34737 -24.10103 -23.06427 -21.41387 -21.06597 -20.52268 -19.71242 -19.23280 -18.03266 -17.89985 -16.82868 -16.48982 -16.14513 -15.85545 -15.42337 -15.33659 -14.92274 -14.64817 -14.45347 -14.07956 -13.93741 -13.74718 -13.28365 -13.25047 -12.80088 -12.55843 -12.53859 -12.14722 -11.78829 -11.51676 -11.36971 -11.23000 -11.03155 -10.99525 -10.90020 -10.72692 -10.65953 -10.65211 -10.42465 -10.40698 -10.22984 -9.64331 -9.50600 -8.47540 -7.98992 -7.91345 -6.42896 -3.83602 -0.84182 0.22606 0.90704 1.42160 2.39981 2.43612 3.16740 3.25407 3.30918 3.45981 3.89511 3.98088 4.07730 4.13970 4.22870 4.33617 4.40546 4.66534 5.01504 5.03221 5.07948 5.18076 5.24266 5.33642 5.37436 5.49035 5.62740 5.68893 5.74944 5.77924 5.86424 5.95953 6.14074 6.26968 6.40472 6.75707 7.07504 7.19584 7.22201 7.47083 7.54027 8.05226 8.60927 9.17335 9.53610 10.05605 10.74916 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.001691 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.707758 B =16551.276869 C =16959.687931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.504 5.504 14 C 0.053 3.947 15 C -0.127 4.127 16 C -0.126 4.126 17 H 0.083 0.917 18 C 0.131 3.869 19 N -0.717 5.717 20 C 0.601 3.399 21 O -0.514 6.514 22 C -0.288 4.288 23 C 0.076 3.924 24 N -0.251 5.251 25 N -0.253 5.253 26 S 0.424 5.576 27 C 0.051 3.949 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.217 0.783 40 H 0.081 0.919 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -23.776 7.287 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.091 4.091 13 N -0.228 5.228 14 C -0.075 4.075 15 C -0.165 4.165 16 C -0.146 4.146 17 H 0.102 0.898 18 C 0.008 3.992 19 N -0.369 5.369 20 C 0.384 3.616 21 O -0.389 6.389 22 C -0.429 4.429 23 C -0.091 4.091 24 N -0.115 5.115 25 N -0.235 5.235 26 S 0.559 5.441 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.234 0.766 40 H 0.099 0.901 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.093 -23.826 8.019 25.163 hybrid contribution -0.964 0.657 -0.387 1.229 sum 0.129 -23.168 7.632 24.394 Atomic orbital electron populations 1.69614 1.05923 1.28112 1.50767 1.25256 0.95636 0.99698 0.97402 0.85861 0.79197 0.80840 0.78408 1.20401 1.20969 1.19459 1.19691 0.93343 0.82221 1.47505 0.87944 1.41862 1.09149 1.04598 1.64691 1.19736 0.88429 0.84513 0.84411 1.90508 1.13669 1.86995 1.54926 1.22127 0.93928 0.91641 1.01433 1.63265 1.25515 1.01039 1.32993 1.23026 1.00611 0.94590 0.89235 1.22890 0.96876 0.96092 1.00664 1.22700 0.99130 0.93434 0.99314 0.89820 1.21513 1.02845 0.87694 0.87098 1.45893 1.72787 1.07096 1.11101 1.16446 0.77367 0.81474 0.86333 1.90886 1.50157 1.74854 1.23041 1.28090 1.15478 0.99209 1.00147 1.24515 0.96464 0.91816 0.96304 1.70718 1.16033 1.28408 0.96351 1.78922 1.18929 1.01147 1.24461 1.82658 1.48854 1.18084 0.94537 1.22820 0.97935 0.89485 0.97537 0.91911 0.77550 0.89371 0.93378 0.88699 0.93956 0.91110 0.90265 0.90101 0.90539 0.76524 0.76650 0.90061 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.57 -14.05 5.29 -10.96 -0.06 -14.10 16 10 C 0.44 10.18 7.58 -10.99 -0.08 10.10 16 11 O -0.58 -15.22 14.61 5.55 0.08 -15.14 16 12 C 0.04 0.68 5.06 -4.97 -0.03 0.65 16 13 N -0.50 -7.68 4.86 -232.69 -1.13 -8.81 16 14 C 0.05 0.74 5.75 -2.30 -0.01 0.73 16 15 C -0.13 -1.19 6.44 -24.59 -0.16 -1.35 16 16 C -0.13 -1.01 2.96 -88.80 -0.26 -1.27 16 17 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 18 C 0.13 0.97 4.97 -4.04 -0.02 0.95 16 19 N -0.72 -4.61 5.47 -61.46 -0.34 -4.94 16 20 C 0.60 4.98 7.80 -12.63 -0.10 4.88 16 21 O -0.51 -6.01 16.98 5.25 0.09 -5.93 16 22 C -0.29 -1.97 6.81 -35.95 -0.24 -2.21 16 23 C 0.08 0.54 11.55 -17.80 -0.21 0.34 16 24 N -0.25 -2.23 11.54 30.36 0.35 -1.88 16 25 N -0.25 -2.16 12.51 60.35 0.75 -1.40 16 26 S 0.42 2.26 23.05 -107.50 -2.48 -0.22 16 27 C 0.05 0.55 6.45 -2.84 -0.02 0.53 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 30 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 32 H 0.09 1.63 7.38 -51.93 -0.38 1.25 16 33 H 0.04 0.60 7.62 -51.93 -0.40 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.78 7.94 -51.93 -0.41 0.36 16 36 H 0.08 0.68 8.00 -51.93 -0.42 0.27 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 1.68 7.90 -40.82 -0.32 1.36 16 39 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 41 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -33.95 364.73 -7.98 -41.92 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.08 Total: 7.23 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.37 Total: 5.49 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.30 Total: -54.64 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.48 Total: -0.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.95 -7.98 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691119037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.856 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds