Wall clock time and date at job start Tue Mar 31 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00054 * 2 1 4 4 H 1.48504 * 109.46748 * 269.99510 * 3 2 1 5 5 H 1.48496 * 109.47390 * 29.99322 * 3 2 1 6 6 H 1.48500 * 109.47324 * 149.99696 * 3 2 1 7 7 C 1.38952 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99535 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99988 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99846 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99830 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46919 * 179.97438 * 12 10 9 14 14 C 1.47838 * 110.99774 * 69.15501 * 13 12 10 15 15 C 1.54906 * 104.79543 * 146.36499 * 14 13 12 16 16 C 1.55145 * 101.65298 * 322.92789 * 15 14 13 17 17 H 1.09000 * 110.85168 * 277.20529 * 16 15 14 18 18 C 1.52990 * 110.70880 * 154.03403 * 16 15 14 19 19 N 1.46509 * 109.47098 * 71.40224 * 18 16 15 20 20 C 1.34770 * 119.99849 * 179.97438 * 19 18 16 21 21 O 1.21628 * 120.00551 * 0.02562 * 20 19 18 22 22 C 1.47177 * 119.99918 * 179.97438 * 20 19 18 23 23 C 1.38247 * 128.47671 * 180.02562 * 22 20 19 24 24 N 1.31234 * 111.88543 * 180.29345 * 23 22 20 25 25 N 1.27339 * 120.03998 * 359.45464 * 24 23 22 26 26 S 1.56636 * 109.73725 * 0.53439 * 25 24 23 27 27 C 1.47438 * 110.99574 * 189.99859 * 13 12 10 28 28 H 0.97001 * 119.99555 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99577 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47211 * 59.99954 * 12 10 9 31 31 H 1.09002 * 109.46989 * 299.99467 * 12 10 9 32 32 H 1.08998 * 110.37416 * 265.18910 * 14 13 12 33 33 H 1.08999 * 110.37689 * 27.42493 * 14 13 12 34 34 H 1.09004 * 110.99304 * 204.83878 * 15 14 13 35 35 H 1.08998 * 110.99706 * 81.01676 * 15 14 13 36 36 H 1.09003 * 109.47327 * 311.40347 * 18 16 15 37 37 H 1.09004 * 109.47410 * 191.40084 * 18 16 15 38 38 H 0.96996 * 119.99513 * 0.02562 * 19 18 16 39 39 H 1.08002 * 124.05342 * 0.02562 * 23 22 20 40 40 H 1.09000 * 109.88457 * 117.33838 * 27 13 12 41 41 H 1.08995 * 110.02576 * 356.22354 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9796 -0.0005 14 6 2.9159 -6.0636 1.2893 15 6 3.1543 -7.5780 1.5114 16 6 1.8429 -8.1874 0.9494 17 1 1.0491 -8.1551 1.6957 18 6 2.0746 -9.6219 0.4706 19 7 2.2687 -10.4980 1.6287 20 6 2.4902 -11.8150 1.4477 21 8 2.5296 -12.2762 0.3229 22 6 2.6858 -12.6950 2.6110 23 6 2.9230 -14.0569 2.6292 24 7 3.0413 -14.5165 3.8527 25 7 2.9453 -13.7229 4.8439 26 16 2.6739 -12.2677 4.3320 27 6 1.5113 -7.2619 -0.2401 28 1 -0.4849 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0002 30 1 0.6174 -4.9205 -0.8903 31 1 0.6168 -4.9209 0.8898 32 1 3.8670 -5.5346 1.2296 33 1 2.3035 -5.6525 2.0918 34 1 3.2670 -7.8043 2.5717 35 1 4.0194 -7.9243 0.9458 36 1 2.9613 -9.6548 -0.1626 37 1 1.2086 -9.9592 -0.0991 38 1 2.2369 -10.1302 2.5257 39 1 2.9973 -14.6697 1.7429 40 1 1.8706 -7.7073 -1.1678 41 1 0.4345 -7.1033 -0.2977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691119037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:00 Heat of formation + Delta-G solvation = -15.976545 kcal Electronic energy + Delta-G solvation = -25589.689993 eV Core-core repulsion = 21631.299940 eV Total energy + Delta-G solvation = -3958.390053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93213 -40.95807 -40.40742 -39.21220 -36.30030 -35.81234 -33.59580 -33.25357 -32.75977 -30.54175 -29.04498 -28.33632 -26.56874 -25.48336 -23.67657 -22.34595 -21.84790 -21.24250 -20.95096 -20.24148 -19.86325 -18.62524 -17.91172 -17.32859 -17.06444 -16.85458 -16.47018 -16.21647 -16.09829 -15.95973 -15.56565 -15.55501 -15.01329 -14.62509 -14.50986 -14.23884 -13.83202 -13.63972 -13.53132 -13.21443 -13.00797 -12.98158 -12.82286 -12.40809 -12.30931 -12.11390 -12.07488 -11.85247 -11.61783 -11.52029 -11.45984 -11.24132 -11.19796 -10.93679 -10.27872 -10.22823 -9.98452 -9.13363 -8.45011 -5.93239 -1.37331 -0.25470 0.40591 0.86664 1.38667 1.42338 1.54648 1.81248 1.83889 2.09135 2.29976 2.87925 2.95166 3.22109 3.41384 3.52759 3.60774 3.65089 3.73389 3.92806 4.31244 4.35655 4.36809 4.42184 4.53297 4.56976 4.58963 4.68402 4.81248 4.89192 4.99623 5.08643 5.16019 5.24496 5.39374 5.42570 5.92895 6.09801 6.20776 6.23942 6.55587 6.63584 6.90572 7.15619 7.59759 8.16156 8.72373 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.001691 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.707758 B =16551.276869 C =16959.687931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.617 6.617 12 C 0.054 3.946 13 N -0.532 5.532 14 C 0.049 3.951 15 C -0.116 4.116 16 C -0.108 4.108 17 H 0.107 0.893 18 C 0.138 3.862 19 N -0.705 5.705 20 C 0.605 3.395 21 O -0.552 6.552 22 C -0.302 4.302 23 C 0.075 3.925 24 N -0.279 5.279 25 N -0.291 5.291 26 S 0.507 5.493 27 C 0.048 3.952 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.413 0.587 39 H 0.229 0.771 40 H 0.083 0.917 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 -24.291 8.176 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.503 6.503 12 C -0.077 4.077 13 N -0.257 5.257 14 C -0.078 4.078 15 C -0.154 4.154 16 C -0.127 4.127 17 H 0.125 0.875 18 C 0.014 3.986 19 N -0.357 5.357 20 C 0.389 3.611 21 O -0.431 6.431 22 C -0.443 4.443 23 C -0.093 4.093 24 N -0.141 5.141 25 N -0.273 5.273 26 S 0.642 5.358 27 C -0.080 4.080 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.250 0.750 39 H 0.245 0.755 40 H 0.101 0.899 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.040 -24.353 8.941 25.943 hybrid contribution -0.598 0.862 -0.652 1.235 sum -0.638 -23.491 8.289 24.919 Atomic orbital electron populations 1.69671 1.06748 1.29186 1.50577 1.26004 0.96543 1.02302 0.96451 0.84951 0.77889 0.77059 0.78579 1.19795 1.19538 1.19843 1.19633 0.92620 0.84086 1.49751 0.90479 1.41939 1.09275 1.04704 1.65515 1.20892 0.88343 0.86039 0.81986 1.90483 1.15832 1.87920 1.56061 1.21976 0.93601 0.88778 1.03381 1.63131 1.26239 1.02457 1.33858 1.22933 0.98465 0.97539 0.88883 1.22837 0.97499 0.92453 1.02608 1.22561 0.98812 0.92821 0.98524 0.87475 1.21379 1.02637 0.87326 0.87228 1.45755 1.71837 1.06436 1.11636 1.16530 0.76687 0.81843 0.86049 1.90872 1.52046 1.75588 1.24596 1.27999 1.16179 0.99119 1.00983 1.24764 0.95893 0.92300 0.96317 1.70772 1.17315 1.29279 0.96755 1.78670 1.20247 1.03028 1.25319 1.82271 1.45915 1.15358 0.92272 1.22887 0.98590 0.87745 0.98774 0.91374 0.77047 0.87460 0.91022 0.92999 0.94181 0.88156 0.90842 0.91173 0.90067 0.74968 0.75475 0.89915 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.58 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 20.52 7.58 87.66 0.66 21.18 16 11 O -0.62 -33.76 14.61 -3.06 -0.04 -33.80 16 12 C 0.05 1.75 5.06 85.56 0.43 2.19 16 13 N -0.53 -15.65 4.86 -890.10 -4.33 -19.98 16 14 C 0.05 1.37 5.75 86.77 0.50 1.87 16 15 C -0.12 -1.90 6.44 31.98 0.21 -1.69 16 16 C -0.11 -1.36 2.96 -9.61 -0.03 -1.38 16 17 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 18 C 0.14 1.65 4.97 86.37 0.43 2.08 16 19 N -0.70 -6.95 5.47 -466.61 -2.55 -9.50 16 20 C 0.61 8.84 7.80 86.59 0.68 9.51 16 21 O -0.55 -12.33 16.98 -4.12 -0.07 -12.40 16 22 C -0.30 -3.56 6.81 24.62 0.17 -3.39 16 23 C 0.08 1.00 11.55 84.78 0.98 1.98 16 24 N -0.28 -4.73 11.54 -57.87 -0.67 -5.40 16 25 N -0.29 -4.57 12.51 37.02 0.46 -4.11 16 26 S 0.51 4.13 23.05 -56.49 -1.30 2.83 16 27 C 0.05 0.90 6.45 86.65 0.56 1.46 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 30 H 0.11 3.07 8.03 -2.39 -0.02 3.05 16 31 H 0.07 2.00 7.85 -2.39 -0.02 1.99 16 32 H 0.05 1.86 7.38 -2.39 -0.02 1.85 16 33 H 0.04 1.10 7.62 -2.39 -0.02 1.08 16 34 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 36 H 0.07 1.05 8.00 -2.39 -0.02 1.03 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.41 1.84 7.90 -92.71 -0.73 1.11 16 39 H 0.23 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.08 1.55 7.82 -2.39 -0.02 1.53 16 41 H 0.08 1.20 7.56 -2.39 -0.02 1.18 16 Total: -1.00 -76.36 364.73 -2.32 -78.68 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.37 Total: 22.94 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.86 Total: 15.69 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -8.43 Total: -118.57 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.11 Total: -46.21 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.30 Total: 2.83 kcal Total: -76.36 -2.32 -78.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691119037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.700 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds