Wall clock time and date at job start Tue Mar 31 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86790 * 119.99931 * 2 1 4 4 H 1.48506 * 109.47428 * 270.00112 * 3 2 1 5 5 H 1.48508 * 109.47300 * 30.00092 * 3 2 1 6 6 H 1.48504 * 109.47448 * 150.00036 * 3 2 1 7 7 C 1.38953 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99955 * 0.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47107 * 180.02562 * 12 10 9 14 14 C 1.47449 * 110.99925 * 69.87541 * 13 12 10 15 15 C 1.54311 * 107.23220 * 123.25698 * 14 13 12 16 16 C 1.55140 * 103.02352 * 22.28584 * 15 14 13 17 17 H 1.08997 * 110.99089 * 82.43557 * 16 15 14 18 18 C 1.52999 * 110.99230 * 206.21746 * 16 15 14 19 19 N 1.46496 * 109.46923 * 293.54362 * 18 16 15 20 20 C 1.34778 * 119.99662 * 180.02562 * 19 18 16 21 21 O 1.21626 * 120.00321 * 0.02562 * 20 19 18 22 22 C 1.47170 * 119.99922 * 179.97438 * 20 19 18 23 23 C 1.38246 * 128.47555 * 179.97438 * 22 20 19 24 24 N 1.31243 * 111.89202 * 180.02562 * 23 22 20 25 25 N 1.27337 * 120.03333 * 359.97438 * 24 23 22 26 26 S 1.56636 * 109.74348 * 359.69899 * 25 24 23 27 27 C 1.47840 * 111.00178 * 190.71556 * 13 12 10 28 28 H 0.96996 * 120.00229 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 31 31 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 32 32 H 1.08997 * 109.88742 * 242.66510 * 14 13 12 33 33 H 1.09004 * 109.88813 * 3.68788 * 14 13 12 34 34 H 1.09003 * 110.70864 * 140.66988 * 15 14 13 35 35 H 1.09001 * 110.70797 * 263.89665 * 15 14 13 36 36 H 1.09003 * 109.47267 * 53.54207 * 18 16 15 37 37 H 1.09002 * 109.47329 * 173.54150 * 18 16 15 38 38 H 0.96996 * 120.00412 * 359.97438 * 19 18 16 39 39 H 1.07998 * 124.06039 * 0.02562 * 23 22 20 40 40 H 1.09005 * 110.37490 * 332.47029 * 27 13 12 41 41 H 1.09002 * 110.37399 * 94.80649 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3705 -0.0011 13 7 6.0504 -3.7555 -0.0017 14 6 5.7800 -4.4110 -1.2945 15 6 7.1327 -4.9066 -1.8475 16 6 8.0145 -5.0080 -0.5752 17 1 7.8366 -5.9466 -0.0505 18 6 9.4964 -4.8492 -0.9213 19 7 9.9338 -5.9897 -1.7301 20 6 11.2109 -6.0649 -2.1539 21 8 12.0005 -5.1861 -1.8646 22 6 11.6505 -7.2108 -2.9660 23 6 12.9050 -7.4635 -3.4892 24 7 12.9353 -8.5870 -4.1669 25 7 11.8823 -9.2950 -4.2746 26 16 10.7026 -8.6090 -3.5057 27 6 7.5056 -3.8031 0.2549 28 1 -0.4850 0.8400 0.0004 29 1 3.8648 -0.3633 -0.0007 30 1 5.9241 -1.8567 0.8889 31 1 5.9240 -1.8567 -0.8910 32 1 5.1071 -5.2559 -1.1483 33 1 5.3331 -3.6967 -1.9861 34 1 7.0219 -5.8834 -2.3185 35 1 7.5500 -4.1845 -2.5493 36 1 9.6412 -3.9274 -1.4847 37 1 10.0819 -4.8094 -0.0027 38 1 9.3044 -6.6911 -1.9600 39 1 13.7577 -6.8143 -3.3563 40 1 7.9808 -2.8820 -0.0825 41 1 7.6988 -3.9643 1.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691119038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:03 Heat of formation + Delta-G solvation = 18.981119 kcal Electronic energy + Delta-G solvation = -25670.156336 eV Core-core repulsion = 21713.282161 eV Total energy + Delta-G solvation = -3956.874175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40264 -40.25110 -39.33981 -37.88074 -35.50584 -33.96700 -32.89974 -32.09037 -31.62110 -29.71503 -28.35695 -27.31293 -25.42756 -23.96570 -23.12972 -21.47727 -20.93294 -20.69448 -19.75989 -19.30938 -18.31936 -17.94831 -16.88406 -16.51990 -16.24355 -16.01353 -15.55771 -15.30929 -15.15640 -14.86065 -14.58126 -14.17534 -13.83201 -13.57304 -13.28147 -13.18678 -12.99234 -12.62908 -12.48459 -12.32907 -12.30021 -11.79933 -11.44788 -11.30294 -11.18504 -11.08074 -10.92838 -10.76536 -10.68573 -10.68273 -10.61111 -10.44753 -9.98977 -9.70253 -9.57311 -8.60650 -8.19167 -8.04609 -6.32215 -3.83595 -0.86489 0.20507 0.88715 1.39703 2.35130 2.39489 3.01133 3.05004 3.13740 3.43695 3.72909 3.84024 4.04908 4.08903 4.11717 4.27291 4.45567 4.51388 4.81264 4.98052 4.99969 5.13610 5.16059 5.19183 5.30467 5.45412 5.52691 5.57536 5.62231 5.71627 5.74443 5.85957 5.95616 6.00949 6.32415 6.71428 7.05357 7.07823 7.10287 7.42640 7.57364 8.13161 8.59290 8.94343 9.41470 9.82675 10.80966 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.001777 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.917951 B =15750.734222 C =16166.180140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.558 6.558 12 C 0.038 3.962 13 N -0.505 5.505 14 C 0.056 3.944 15 C -0.142 4.142 16 C -0.113 4.113 17 H 0.095 0.905 18 C 0.130 3.870 19 N -0.717 5.717 20 C 0.602 3.398 21 O -0.515 6.515 22 C -0.290 4.290 23 C 0.076 3.924 24 N -0.251 5.251 25 N -0.253 5.253 26 S 0.426 5.574 27 C 0.052 3.948 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.217 0.783 40 H 0.049 0.951 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.525 -12.226 -5.325 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.439 6.439 12 C -0.094 4.094 13 N -0.229 5.229 14 C -0.072 4.072 15 C -0.180 4.180 16 C -0.132 4.132 17 H 0.114 0.886 18 C 0.007 3.993 19 N -0.368 5.368 20 C 0.385 3.615 21 O -0.390 6.390 22 C -0.431 4.431 23 C -0.091 4.091 24 N -0.115 5.115 25 N -0.234 5.234 26 S 0.561 5.439 27 C -0.077 4.077 28 H 0.084 0.916 29 H 0.202 0.798 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.067 0.933 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.555 -14.106 -5.517 28.004 hybrid contribution 1.381 2.810 -0.254 3.141 sum 24.936 -11.296 -5.771 27.977 Atomic orbital electron populations 1.69619 1.05628 1.27471 1.49484 1.25036 0.95491 0.97957 0.97723 0.86678 0.79805 0.84097 0.78828 1.19702 1.20178 1.19495 1.19415 0.79228 0.96591 1.48026 0.86303 1.42215 1.07523 1.06130 1.67412 1.19641 0.88043 0.84565 0.83984 1.90558 1.69338 1.30855 1.53192 1.22121 0.95768 0.89931 1.01599 1.63236 1.12038 1.15381 1.32213 1.22735 0.95515 1.00002 0.88949 1.22982 0.96368 1.01926 0.96762 1.22580 0.92347 1.00899 0.97368 0.88649 1.21456 0.94309 0.88210 0.95304 1.45861 1.10201 1.26386 1.54395 1.16446 0.82527 0.83611 0.78959 1.90882 1.53026 1.38678 1.56461 1.28071 0.99259 1.04291 1.11468 1.24516 0.97967 0.93500 0.93082 1.70728 1.18153 1.05137 1.17495 1.78918 0.99979 1.24787 1.19733 1.82678 1.21753 1.06078 1.33372 1.23006 0.88098 0.96144 1.00403 0.91634 0.79776 0.89245 0.93177 0.89685 0.92500 0.90766 0.91331 0.90591 0.90360 0.76379 0.76672 0.93267 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.11 27.73 -169.99 -4.71 14.39 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.30 -8.47 10.16 -14.94 -0.15 -8.62 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 9 N -0.59 -13.83 5.09 -10.97 -0.06 -13.88 16 10 C 0.45 9.96 7.43 -10.98 -0.08 9.88 16 11 O -0.56 -14.53 15.12 5.55 0.08 -14.45 16 12 C 0.04 0.59 5.03 -4.98 -0.03 0.57 16 13 N -0.50 -7.25 4.85 -232.69 -1.13 -8.38 16 14 C 0.06 0.75 5.65 -2.84 -0.02 0.73 16 15 C -0.14 -1.21 6.12 -24.91 -0.15 -1.36 16 16 C -0.11 -0.84 3.10 -88.48 -0.27 -1.12 16 17 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 18 C 0.13 0.88 5.12 -4.04 -0.02 0.86 16 19 N -0.72 -4.32 5.40 -61.47 -0.33 -4.65 16 20 C 0.60 4.76 7.80 -12.63 -0.10 4.66 16 21 O -0.51 -5.81 16.98 5.25 0.09 -5.72 16 22 C -0.29 -1.90 6.81 -35.95 -0.25 -2.15 16 23 C 0.08 0.53 11.55 -17.80 -0.21 0.32 16 24 N -0.25 -2.18 11.54 30.36 0.35 -1.83 16 25 N -0.25 -2.11 12.51 60.35 0.75 -1.35 16 26 S 0.43 2.19 23.05 -107.50 -2.48 -0.29 16 27 C 0.05 0.51 6.15 -2.30 -0.01 0.50 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 30 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.05 0.69 7.96 -51.93 -0.41 0.28 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 36 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 1.58 7.77 -40.82 -0.32 1.26 16 39 H 0.22 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.05 0.44 7.71 -51.93 -0.40 0.04 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -35.33 362.55 -7.67 -43.00 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.09 Total: 7.17 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.38 Total: 5.27 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.36 Total: -54.84 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.17 Total: -20.17 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.48 Total: -0.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.33 -7.67 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691119038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.980 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds