Wall clock time and date at job start Tue Mar 31 2020 22:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86790 * 119.99931 * 2 1 4 4 H 1.48506 * 109.47428 * 270.00112 * 3 2 1 5 5 H 1.48508 * 109.47300 * 30.00092 * 3 2 1 6 6 H 1.48504 * 109.47448 * 150.00036 * 3 2 1 7 7 C 1.38953 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99955 * 0.02562 * 7 2 1 9 9 N 1.37091 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99822 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00161 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47107 * 180.02562 * 12 10 9 14 14 C 1.47449 * 110.99925 * 69.87541 * 13 12 10 15 15 C 1.54311 * 107.23220 * 123.25698 * 14 13 12 16 16 C 1.55140 * 103.02352 * 22.28584 * 15 14 13 17 17 H 1.08997 * 110.99089 * 82.43557 * 16 15 14 18 18 C 1.52999 * 110.99230 * 206.21746 * 16 15 14 19 19 N 1.46496 * 109.46923 * 293.54362 * 18 16 15 20 20 C 1.34778 * 119.99662 * 180.02562 * 19 18 16 21 21 O 1.21626 * 120.00321 * 0.02562 * 20 19 18 22 22 C 1.47170 * 119.99922 * 179.97438 * 20 19 18 23 23 C 1.38246 * 128.47555 * 179.97438 * 22 20 19 24 24 N 1.31243 * 111.89202 * 180.02562 * 23 22 20 25 25 N 1.27337 * 120.03333 * 359.97438 * 24 23 22 26 26 S 1.56636 * 109.74348 * 359.69899 * 25 24 23 27 27 C 1.47840 * 111.00178 * 190.71556 * 13 12 10 28 28 H 0.96996 * 120.00229 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00430 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47152 * 60.00245 * 12 10 9 31 31 H 1.09001 * 109.46980 * 300.00345 * 12 10 9 32 32 H 1.08997 * 109.88742 * 242.66510 * 14 13 12 33 33 H 1.09004 * 109.88813 * 3.68788 * 14 13 12 34 34 H 1.09003 * 110.70864 * 140.66988 * 15 14 13 35 35 H 1.09001 * 110.70797 * 263.89665 * 15 14 13 36 36 H 1.09003 * 109.47267 * 53.54207 * 18 16 15 37 37 H 1.09002 * 109.47329 * 173.54150 * 18 16 15 38 38 H 0.96996 * 120.00412 * 359.97438 * 19 18 16 39 39 H 1.07998 * 124.06039 * 0.02562 * 23 22 20 40 40 H 1.09005 * 110.37490 * 332.47029 * 27 13 12 41 41 H 1.09002 * 110.37399 * 94.80649 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3705 -0.0011 13 7 6.0504 -3.7555 -0.0017 14 6 5.7800 -4.4110 -1.2945 15 6 7.1327 -4.9066 -1.8475 16 6 8.0145 -5.0080 -0.5752 17 1 7.8366 -5.9466 -0.0505 18 6 9.4964 -4.8492 -0.9213 19 7 9.9338 -5.9897 -1.7301 20 6 11.2109 -6.0649 -2.1539 21 8 12.0005 -5.1861 -1.8646 22 6 11.6505 -7.2108 -2.9660 23 6 12.9050 -7.4635 -3.4892 24 7 12.9353 -8.5870 -4.1669 25 7 11.8823 -9.2950 -4.2746 26 16 10.7026 -8.6090 -3.5057 27 6 7.5056 -3.8031 0.2549 28 1 -0.4850 0.8400 0.0004 29 1 3.8648 -0.3633 -0.0007 30 1 5.9241 -1.8567 0.8889 31 1 5.9240 -1.8567 -0.8910 32 1 5.1071 -5.2559 -1.1483 33 1 5.3331 -3.6967 -1.9861 34 1 7.0219 -5.8834 -2.3185 35 1 7.5500 -4.1845 -2.5493 36 1 9.6412 -3.9274 -1.4847 37 1 10.0819 -4.8094 -0.0027 38 1 9.3044 -6.6911 -1.9600 39 1 13.7577 -6.8143 -3.3563 40 1 7.9808 -2.8820 -0.0825 41 1 7.6988 -3.9643 1.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691119038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:03 Heat of formation + Delta-G solvation = -11.329558 kcal Electronic energy + Delta-G solvation = -25671.470706 eV Core-core repulsion = 21713.282161 eV Total energy + Delta-G solvation = -3958.188545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.93332 -40.99124 -40.48076 -39.28866 -36.31852 -35.85308 -33.77786 -33.52378 -32.81685 -30.53914 -29.13155 -28.42355 -26.54091 -25.37934 -23.70531 -22.29746 -21.81393 -21.35847 -21.11260 -20.26120 -20.06377 -18.59770 -17.68299 -17.56284 -17.07395 -16.93163 -16.77360 -16.36155 -16.11626 -15.84943 -15.56054 -15.31429 -14.99134 -14.72885 -14.56515 -14.22296 -14.08183 -13.82801 -13.60467 -13.33010 -13.15603 -12.98367 -12.88624 -12.40443 -12.28066 -12.05117 -11.97374 -11.88417 -11.57593 -11.52005 -11.48223 -11.24154 -11.20057 -10.94055 -10.38326 -10.24224 -10.22454 -9.15685 -8.40005 -6.00489 -1.37514 -0.25467 0.40375 0.86547 1.30789 1.35946 1.45003 1.80860 1.83069 1.99113 2.23833 2.69355 2.95026 3.16356 3.24770 3.54848 3.62255 3.62655 3.77340 3.86121 4.18606 4.33048 4.35877 4.40353 4.49665 4.51293 4.56929 4.73115 4.78138 4.82511 4.98351 5.09970 5.16147 5.22837 5.39557 5.54426 5.92719 6.03856 6.16156 6.22715 6.55411 6.61941 6.89537 6.90652 7.42316 8.00118 8.77703 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.001777 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.917951 B =15750.734222 C =16166.180140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.326 4.326 8 H 0.054 0.946 9 N -0.595 5.595 10 C 0.450 3.550 11 O -0.607 6.607 12 C 0.051 3.949 13 N -0.533 5.533 14 C 0.053 3.947 15 C -0.130 4.130 16 C -0.097 4.097 17 H 0.103 0.897 18 C 0.137 3.863 19 N -0.706 5.706 20 C 0.606 3.394 21 O -0.551 6.551 22 C -0.302 4.302 23 C 0.075 3.925 24 N -0.279 5.279 25 N -0.291 5.291 26 S 0.505 5.495 27 C 0.050 3.950 28 H 0.278 0.722 29 H 0.389 0.611 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.230 0.770 40 H 0.067 0.933 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.580 -10.991 -5.282 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.455 4.455 8 H 0.073 0.927 9 N -0.237 5.237 10 C 0.238 3.762 11 O -0.490 6.490 12 C -0.081 4.081 13 N -0.258 5.258 14 C -0.075 4.075 15 C -0.168 4.168 16 C -0.116 4.116 17 H 0.121 0.879 18 C 0.014 3.986 19 N -0.358 5.358 20 C 0.390 3.610 21 O -0.430 6.430 22 C -0.443 4.443 23 C -0.093 4.093 24 N -0.141 5.141 25 N -0.273 5.273 26 S 0.639 5.361 27 C -0.078 4.078 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.250 0.750 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.629 -12.913 -5.481 30.098 hybrid contribution 0.269 2.257 -0.239 2.285 sum 26.898 -10.657 -5.720 29.492 Atomic orbital electron populations 1.69806 1.08130 1.29170 1.50548 1.26112 0.96470 1.02704 0.96217 0.85371 0.79535 0.76774 0.79878 1.18223 1.20137 1.15382 1.18984 0.81540 0.94835 1.50162 0.92735 1.42055 1.05778 1.07623 1.68232 1.20980 0.90964 0.83276 0.80984 1.90536 1.71325 1.32685 1.54491 1.22015 0.90188 0.91677 1.04208 1.63125 1.15239 1.14570 1.32830 1.22643 0.97731 0.98455 0.88628 1.22914 0.93471 1.03127 0.97302 1.22444 0.92476 1.00388 0.96308 0.87887 1.21353 0.93441 0.88256 0.95547 1.45760 1.09862 1.26486 1.53657 1.16500 0.82568 0.83327 0.78610 1.90868 1.54047 1.40085 1.57991 1.28010 0.99789 1.04754 1.11734 1.24773 0.98711 0.93199 0.92573 1.70776 1.18800 1.05889 1.18659 1.78676 1.01091 1.26108 1.21394 1.82322 1.19197 1.03843 1.30709 1.23108 0.85287 0.97962 1.01400 0.91222 0.77589 0.86404 0.90330 0.92667 0.94864 0.88618 0.90376 0.90740 0.89943 0.75023 0.75405 0.91506 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.23 13.96 21.66 0.30 -55.93 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 3 Si 0.96 38.37 27.73 68.60 1.90 40.27 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.66 6.52 99.48 0.65 -7.02 16 7 C -0.33 -18.96 10.16 84.04 0.85 -18.11 16 8 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 9 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 10 C 0.45 19.92 7.43 87.66 0.65 20.57 16 11 O -0.61 -33.06 15.12 -3.05 -0.05 -33.11 16 12 C 0.05 1.47 5.03 85.56 0.43 1.90 16 13 N -0.53 -14.36 4.85 -890.08 -4.32 -18.68 16 14 C 0.05 1.39 5.65 86.64 0.49 1.88 16 15 C -0.13 -1.85 6.12 31.77 0.19 -1.65 16 16 C -0.10 -1.12 3.10 -9.41 -0.03 -1.15 16 17 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 18 C 0.14 1.36 5.12 86.38 0.44 1.80 16 19 N -0.71 -6.23 5.40 -466.63 -2.52 -8.75 16 20 C 0.61 8.17 7.80 86.59 0.68 8.85 16 21 O -0.55 -11.46 16.98 -4.11 -0.07 -11.52 16 22 C -0.30 -3.37 6.81 24.62 0.17 -3.20 16 23 C 0.08 0.95 11.55 84.78 0.98 1.93 16 24 N -0.28 -4.62 11.54 -57.87 -0.67 -5.28 16 25 N -0.29 -4.51 12.51 37.02 0.46 -4.05 16 26 S 0.50 4.03 23.05 -56.49 -1.30 2.73 16 27 C 0.05 0.81 6.15 86.77 0.53 1.34 16 28 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.39 14.89 5.76 -92.70 -0.53 14.36 16 30 H 0.12 2.80 8.07 -2.39 -0.02 2.78 16 31 H 0.08 1.88 7.96 -2.39 -0.02 1.86 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.00 7.31 -2.38 -0.02 0.98 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.02 8.01 -2.39 -0.02 1.00 16 36 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.41 1.72 7.77 -92.71 -0.72 1.00 16 39 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.07 0.89 7.71 -2.38 -0.02 0.87 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -84.09 362.55 -2.18 -86.27 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -0.22 Total: 23.56 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.86 Total: 13.71 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -8.31 Total: -121.91 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.12 Total: -44.63 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.30 Total: 2.73 kcal Total: -84.09 -2.18 -86.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691119038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.939 kcal (2) G-P(sol) polarization free energy of solvation -84.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds