Wall clock time and date at job start Tue Mar 31 2020 22:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48499 * 109.46965 * 269.99927 * 3 2 1 5 5 H 1.48497 * 109.46992 * 29.99765 * 3 2 1 6 6 H 1.48493 * 109.47060 * 149.99660 * 3 2 1 7 7 C 1.38951 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99749 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99979 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46928 * 181.34258 * 12 10 9 14 14 C 1.46902 * 110.99746 * 162.32297 * 13 12 10 15 15 C 1.53004 * 109.46881 * 189.99868 * 14 13 12 16 16 N 1.46498 * 109.46999 * 179.97438 * 15 14 13 17 17 C 1.34784 * 119.99693 * 180.02562 * 16 15 14 18 18 O 1.21602 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.47447 * 119.99770 * 179.72229 * 17 16 15 20 20 C 1.37985 * 124.15391 * 180.27326 * 19 17 16 21 21 S 1.72103 * 104.02945 * 179.97438 * 20 19 17 22 22 N 1.56399 * 96.15703 * 0.02562 * 21 20 19 23 23 N 1.27419 * 109.87685 * 359.74330 * 22 21 20 24 24 C 1.46901 * 111.00045 * 286.27491 * 13 12 10 25 25 C 1.53001 * 117.49863 * 3.74642 * 24 13 12 26 26 C 1.53005 * 60.00196 * 252.50919 * 25 24 13 27 27 H 0.97002 * 119.99733 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99634 * 359.97438 * 9 7 2 29 29 H 1.09008 * 109.47284 * 61.34510 * 12 10 9 30 30 H 1.08999 * 109.47702 * 301.34727 * 12 10 9 31 31 H 1.08997 * 109.47359 * 70.00049 * 14 13 12 32 32 H 1.09001 * 109.47259 * 309.99400 * 14 13 12 33 33 H 1.09005 * 109.47139 * 59.99665 * 15 14 13 34 34 H 1.08995 * 109.47621 * 300.00078 * 15 14 13 35 35 H 0.96990 * 120.00299 * 0.02562 * 16 15 14 36 36 H 1.07991 * 127.98274 * 359.96490 * 20 19 17 37 37 H 1.09002 * 115.55286 * 149.45514 * 24 13 12 38 38 H 1.08997 * 117.49950 * 0.02562 * 25 24 13 39 39 H 1.09007 * 117.49806 * 145.01963 * 25 24 13 40 40 H 1.08990 * 117.50009 * 252.50920 * 26 25 24 41 41 H 1.09005 * 117.51390 * 107.47723 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0030 12 6 1.2436 -4.8629 0.0022 13 7 2.1978 -5.9793 0.0357 14 6 1.5380 -7.2234 0.4541 15 6 2.5951 -8.2975 0.7179 16 7 1.9372 -9.5380 1.1357 17 6 2.6754 -10.6282 1.4242 18 8 3.8875 -10.5820 1.3382 19 6 2.0136 -11.8749 1.8506 20 6 2.6842 -13.0374 2.1714 21 16 1.4308 -14.1403 2.5893 22 7 0.2467 -13.1467 2.3510 23 7 0.6989 -12.0154 1.9778 24 6 2.8591 -6.1460 -1.2654 25 6 2.5330 -5.1270 -2.3592 26 6 1.9864 -6.5529 -2.4545 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6354 -4.9318 -0.8999 30 1 0.5985 -4.9098 0.8796 31 1 0.8658 -7.5612 -0.3347 32 1 0.9675 -7.0435 1.3653 33 1 3.2674 -7.9597 1.5067 34 1 3.1657 -8.4775 -0.1932 35 1 0.9705 -9.5748 1.2047 36 1 3.7495 -13.2142 2.1623 37 1 3.8754 -6.5383 -1.2294 38 1 1.8282 -4.3328 -2.1132 39 1 3.3350 -4.8487 -3.0430 40 1 2.4287 -7.2126 -3.2009 41 1 0.9216 -6.6973 -2.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691219975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:24 Heat of formation + Delta-G solvation = 50.297251 kcal Electronic energy + Delta-G solvation = -26056.793540 eV Core-core repulsion = 22101.277335 eV Total energy + Delta-G solvation = -3955.516206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51408 -39.79215 -39.27909 -37.30894 -35.44338 -33.85609 -33.26098 -32.58582 -31.19874 -29.66573 -27.61992 -26.46735 -24.45607 -24.04416 -22.81100 -21.87824 -21.25102 -20.23082 -19.49949 -18.77498 -17.76361 -17.22665 -16.94254 -16.51746 -16.33012 -15.85817 -15.81917 -15.39533 -14.89210 -14.48529 -14.23916 -13.93878 -13.91480 -13.41970 -13.38760 -13.08937 -12.62938 -12.54634 -12.34199 -11.95646 -11.54040 -11.48707 -11.21564 -11.00798 -10.97111 -10.88343 -10.58001 -10.56898 -10.43762 -10.41764 -10.37388 -10.18921 -9.89100 -9.44669 -9.32828 -8.47692 -7.93419 -7.88946 -6.38616 -3.79055 -0.42998 0.42001 0.99839 1.03824 2.69078 2.78302 3.19688 3.28225 3.33810 3.36301 3.87379 3.98510 4.07924 4.21023 4.25944 4.48074 4.72898 4.85702 4.97120 5.11553 5.13261 5.16947 5.20059 5.28685 5.42102 5.67502 5.76402 5.80129 5.86375 5.91449 6.05745 6.21606 6.27655 6.31472 6.47503 6.89227 7.11070 7.21538 7.24795 7.58246 7.76286 8.09299 8.65703 9.22094 9.57948 10.10609 10.79309 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.001844 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.434737 B =15177.569915 C =15468.167393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.295 4.295 8 H 0.103 0.897 9 N -0.569 5.569 10 C 0.448 3.552 11 O -0.567 6.567 12 C 0.038 3.962 13 N -0.479 5.479 14 C 0.045 3.955 15 C 0.124 3.876 16 N -0.706 5.706 17 C 0.604 3.396 18 O -0.522 6.522 19 C -0.021 4.021 20 C -0.235 4.235 21 S 0.463 5.537 22 N -0.289 5.289 23 N -0.211 5.211 24 C 0.041 3.959 25 C -0.165 4.165 26 C -0.228 4.228 27 H 0.270 0.730 28 H 0.391 0.609 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.210 0.790 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -27.890 2.253 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.207 5.207 10 C 0.233 3.767 11 O -0.449 6.449 12 C -0.093 4.093 13 N -0.202 5.202 14 C -0.083 4.083 15 C 0.000 4.000 16 N -0.358 5.358 17 C 0.384 3.616 18 O -0.396 6.396 19 C -0.169 4.169 20 C -0.393 4.393 21 S 0.598 5.402 22 N -0.270 5.270 23 N -0.082 5.082 24 C -0.068 4.068 25 C -0.203 4.203 26 C -0.267 4.267 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.227 0.773 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.482 -28.377 2.927 28.531 hybrid contribution -0.179 1.655 -0.952 1.917 sum -0.660 -26.722 1.975 26.803 Atomic orbital electron populations 1.69612 1.05893 1.28031 1.50998 1.25239 0.95625 0.99641 0.97552 0.85874 0.79254 0.80952 0.78314 1.20504 1.21003 1.19446 1.19674 0.93307 0.82167 1.47323 0.87953 1.41859 1.09084 1.04532 1.65209 1.19587 0.88498 0.84284 0.84360 1.90541 1.13443 1.86779 1.54162 1.22018 0.93960 0.91584 1.01722 1.61455 1.29825 1.02160 1.26733 1.22254 0.95236 0.89970 1.00829 1.21385 0.95479 0.81473 1.01621 1.45754 1.11211 1.11244 1.67543 1.16568 0.86042 0.81158 0.77813 1.90873 1.12616 1.83345 1.52805 1.22715 0.89014 0.97918 1.07215 1.28917 1.09431 0.96842 1.04074 1.81598 0.90805 1.21087 1.46661 1.78657 1.25575 1.01894 1.20832 1.71534 1.11626 1.12796 1.12207 1.22631 0.97948 1.03517 0.82688 1.23243 1.03629 0.92279 1.01113 1.23478 0.99985 0.99743 1.03526 0.91973 0.77645 0.92713 0.89374 0.93873 0.89956 0.89726 0.90567 0.75504 0.77329 0.86007 0.87835 0.88608 0.88907 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C 0.45 10.28 5.84 -10.99 -0.06 10.22 16 11 O -0.57 -15.00 14.79 5.55 0.08 -14.92 16 12 C 0.04 0.66 5.00 -4.98 -0.02 0.64 16 13 N -0.48 -7.56 4.34 -228.07 -0.99 -8.55 16 14 C 0.05 0.53 4.96 -3.82 -0.02 0.51 16 15 C 0.12 1.43 5.67 -4.04 -0.02 1.41 16 16 N -0.71 -7.20 5.55 -61.37 -0.34 -7.54 16 17 C 0.60 6.87 7.81 -12.51 -0.10 6.78 16 18 O -0.52 -7.42 16.80 5.28 0.09 -7.33 16 19 C -0.02 -0.20 6.87 -83.78 -0.58 -0.77 16 20 C -0.24 -1.51 11.21 30.64 0.34 -1.17 16 21 S 0.46 2.23 23.38 -107.50 -2.51 -0.29 16 22 N -0.29 -2.53 12.49 60.35 0.75 -1.78 16 23 N -0.21 -2.08 11.24 32.74 0.37 -1.71 16 24 C 0.04 0.63 4.56 -67.71 -0.31 0.32 16 25 C -0.17 -2.70 8.48 -26.73 -0.23 -2.93 16 26 C -0.23 -2.96 9.26 -26.72 -0.25 -3.21 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 29 H 0.05 0.87 5.99 -51.92 -0.31 0.56 16 30 H 0.09 1.36 7.77 -51.93 -0.40 0.96 16 31 H 0.04 0.46 6.87 -51.93 -0.36 0.10 16 32 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.93 7.30 -51.93 -0.38 0.55 16 35 H 0.41 3.51 8.06 -40.82 -0.33 3.18 16 36 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.85 8.03 -51.93 -0.42 1.43 16 38 H 0.10 1.93 4.91 -51.93 -0.26 1.68 16 39 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.08 7.15 -51.93 -0.37 0.71 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -33.67 362.41 -7.69 -41.36 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.75 Total: 13.26 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.48 Total: 3.96 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.46 Total: -57.60 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.17 Total: -22.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.67 -7.69 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691219975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.656 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds