Wall clock time and date at job start Tue Mar 31 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48499 * 109.46965 * 269.99927 * 3 2 1 5 5 H 1.48497 * 109.46992 * 29.99765 * 3 2 1 6 6 H 1.48493 * 109.47060 * 149.99660 * 3 2 1 7 7 C 1.38951 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00343 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99749 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99979 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46928 * 181.34258 * 12 10 9 14 14 C 1.46902 * 110.99746 * 162.32297 * 13 12 10 15 15 C 1.53004 * 109.46881 * 189.99868 * 14 13 12 16 16 N 1.46498 * 109.46999 * 179.97438 * 15 14 13 17 17 C 1.34784 * 119.99693 * 180.02562 * 16 15 14 18 18 O 1.21602 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.47447 * 119.99770 * 179.72229 * 17 16 15 20 20 C 1.37985 * 124.15391 * 180.27326 * 19 17 16 21 21 S 1.72103 * 104.02945 * 179.97438 * 20 19 17 22 22 N 1.56399 * 96.15703 * 0.02562 * 21 20 19 23 23 N 1.27419 * 109.87685 * 359.74330 * 22 21 20 24 24 C 1.46901 * 111.00045 * 286.27491 * 13 12 10 25 25 C 1.53001 * 117.49863 * 3.74642 * 24 13 12 26 26 C 1.53005 * 60.00196 * 252.50919 * 25 24 13 27 27 H 0.97002 * 119.99733 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99634 * 359.97438 * 9 7 2 29 29 H 1.09008 * 109.47284 * 61.34510 * 12 10 9 30 30 H 1.08999 * 109.47702 * 301.34727 * 12 10 9 31 31 H 1.08997 * 109.47359 * 70.00049 * 14 13 12 32 32 H 1.09001 * 109.47259 * 309.99400 * 14 13 12 33 33 H 1.09005 * 109.47139 * 59.99665 * 15 14 13 34 34 H 1.08995 * 109.47621 * 300.00078 * 15 14 13 35 35 H 0.96990 * 120.00299 * 0.02562 * 16 15 14 36 36 H 1.07991 * 127.98274 * 359.96490 * 20 19 17 37 37 H 1.09002 * 115.55286 * 149.45514 * 24 13 12 38 38 H 1.08997 * 117.49950 * 0.02562 * 25 24 13 39 39 H 1.09007 * 117.49806 * 145.01963 * 25 24 13 40 40 H 1.08990 * 117.50009 * 252.50920 * 26 25 24 41 41 H 1.09005 * 117.51390 * 107.47723 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5580 0.0016 11 8 3.2100 -3.5580 0.0030 12 6 1.2436 -4.8629 0.0022 13 7 2.1978 -5.9793 0.0357 14 6 1.5380 -7.2234 0.4541 15 6 2.5951 -8.2975 0.7179 16 7 1.9372 -9.5380 1.1357 17 6 2.6754 -10.6282 1.4242 18 8 3.8875 -10.5820 1.3382 19 6 2.0136 -11.8749 1.8506 20 6 2.6842 -13.0374 2.1714 21 16 1.4308 -14.1403 2.5893 22 7 0.2467 -13.1467 2.3510 23 7 0.6989 -12.0154 1.9778 24 6 2.8591 -6.1460 -1.2654 25 6 2.5330 -5.1270 -2.3592 26 6 1.9864 -6.5529 -2.4545 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6354 -4.9318 -0.8999 30 1 0.5985 -4.9098 0.8796 31 1 0.8658 -7.5612 -0.3347 32 1 0.9675 -7.0435 1.3653 33 1 3.2674 -7.9597 1.5067 34 1 3.1657 -8.4775 -0.1932 35 1 0.9705 -9.5748 1.2047 36 1 3.7495 -13.2142 2.1623 37 1 3.8754 -6.5383 -1.2294 38 1 1.8282 -4.3328 -2.1132 39 1 3.3350 -4.8487 -3.0430 40 1 2.4287 -7.2126 -3.2009 41 1 0.9216 -6.6973 -2.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691219975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:23 Heat of formation + Delta-G solvation = 22.740619 kcal Electronic energy + Delta-G solvation = -26057.988485 eV Core-core repulsion = 22101.277335 eV Total energy + Delta-G solvation = -3956.711151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15169 -41.03718 -40.30938 -38.96050 -36.41703 -35.84278 -34.39303 -33.27451 -33.16477 -30.81681 -28.44734 -27.70217 -26.11887 -25.04475 -23.75416 -23.05427 -21.92055 -21.55047 -20.60798 -20.15991 -19.65556 -18.13315 -17.93103 -17.62877 -17.22505 -17.14525 -16.63848 -16.40573 -16.25554 -15.95853 -15.60991 -15.24123 -15.12560 -14.91025 -14.59127 -14.14753 -13.67759 -13.57405 -13.46859 -13.20035 -13.02829 -13.02099 -12.72306 -12.38668 -12.30152 -12.15511 -12.10113 -11.62529 -11.58314 -11.45779 -11.28732 -11.17887 -11.04913 -10.90617 -10.27162 -10.22783 -9.94861 -9.18877 -8.42868 -5.90387 -0.94017 -0.05273 0.30027 0.53383 1.38736 1.41961 1.54363 1.84962 1.98788 2.12465 2.30970 2.65234 2.87362 2.89768 3.23626 3.41225 3.63689 3.72947 3.83863 3.96377 3.98609 4.04457 4.13310 4.31244 4.36305 4.39687 4.50563 4.55799 4.73114 4.87414 4.94208 4.97183 5.15186 5.17150 5.23597 5.44531 5.84140 6.07818 6.11931 6.18931 6.52554 6.66070 6.94852 7.18590 7.62724 8.19908 8.74671 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026523 B = 0.001844 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.434737 B =15177.569915 C =15468.167393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.325 4.325 8 H 0.077 0.923 9 N -0.580 5.580 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.052 3.948 13 N -0.501 5.501 14 C 0.052 3.948 15 C 0.133 3.867 16 N -0.697 5.697 17 C 0.604 3.396 18 O -0.558 6.558 19 C -0.044 4.044 20 C -0.238 4.238 21 S 0.564 5.436 22 N -0.332 5.332 23 N -0.231 5.231 24 C 0.031 3.969 25 C -0.194 4.194 26 C -0.187 4.187 27 H 0.276 0.724 28 H 0.394 0.606 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.419 0.581 36 H 0.228 0.772 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -30.103 2.416 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.095 0.905 9 N -0.218 5.218 10 C 0.237 3.763 11 O -0.491 6.491 12 C -0.079 4.079 13 N -0.224 5.224 14 C -0.076 4.076 15 C 0.010 3.990 16 N -0.348 5.348 17 C 0.386 3.614 18 O -0.435 6.435 19 C -0.192 4.192 20 C -0.394 4.394 21 S 0.700 5.300 22 N -0.312 5.312 23 N -0.101 5.101 24 C -0.078 4.078 25 C -0.231 4.231 26 C -0.226 4.226 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.256 0.744 36 H 0.244 0.756 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.559 -30.607 3.089 30.802 hybrid contribution 0.193 2.144 -0.959 2.357 sum -1.366 -28.463 2.130 28.575 Atomic orbital electron populations 1.69672 1.06702 1.29039 1.50965 1.25976 0.96531 1.02231 0.96731 0.84973 0.77881 0.77245 0.78521 1.19784 1.19678 1.19946 1.19599 0.92548 0.84004 1.49349 0.90489 1.41915 1.09166 1.04637 1.66114 1.20599 0.88339 0.85642 0.81750 1.90510 1.15562 1.87687 1.55322 1.21830 0.93571 0.88850 1.03641 1.61319 1.30334 1.03406 1.27297 1.22265 0.95198 0.88094 1.02008 1.21148 0.95252 0.82027 1.00619 1.45635 1.11616 1.10572 1.66999 1.16830 0.85692 0.81855 0.77060 1.90848 1.14076 1.84097 1.54509 1.22488 0.89527 0.97939 1.09287 1.29292 1.10995 0.96590 1.02558 1.81235 0.87815 1.17748 1.43244 1.78326 1.28119 1.02596 1.22200 1.71563 1.11753 1.13675 1.13097 1.22641 0.98640 1.03409 0.83133 1.23150 1.03894 0.93484 1.02593 1.23508 1.00420 0.96818 1.01832 0.91495 0.77219 0.90864 0.87065 0.91709 0.88614 0.91751 0.91184 0.74376 0.75564 0.86440 0.90446 0.89263 0.86739 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 3 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.58 -29.58 5.29 -306.99 -1.62 -31.20 16 10 C 0.45 21.07 5.84 87.65 0.51 21.58 16 11 O -0.61 -33.24 14.79 -3.06 -0.05 -33.29 16 12 C 0.05 1.75 5.00 85.55 0.43 2.17 16 13 N -0.50 -15.35 4.34 -875.49 -3.80 -19.15 16 14 C 0.05 1.11 4.96 86.30 0.43 1.54 16 15 C 0.13 3.00 5.67 86.38 0.49 3.49 16 16 N -0.70 -13.59 5.55 -466.34 -2.59 -16.18 16 17 C 0.60 13.47 7.81 86.67 0.68 14.14 16 18 O -0.56 -15.90 16.80 -4.04 -0.07 -15.96 16 19 C -0.04 -0.79 6.87 41.36 0.28 -0.50 16 20 C -0.24 -2.57 11.21 67.76 0.76 -1.81 16 21 S 0.56 3.88 23.38 -56.49 -1.32 2.56 16 22 N -0.33 -5.23 12.49 37.02 0.46 -4.77 16 23 N -0.23 -4.28 11.24 -50.34 -0.57 -4.85 16 24 C 0.03 0.92 4.56 44.92 0.20 1.13 16 25 C -0.19 -6.36 8.48 30.60 0.26 -6.10 16 26 C -0.19 -4.44 9.26 30.60 0.28 -4.16 16 27 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.39 19.15 7.90 -92.71 -0.73 18.42 16 29 H 0.07 2.21 5.99 -2.38 -0.01 2.19 16 30 H 0.11 3.22 7.77 -2.39 -0.02 3.20 16 31 H 0.06 1.15 6.87 -2.39 -0.02 1.14 16 32 H 0.10 1.83 7.85 -2.39 -0.02 1.81 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.07 1.67 7.30 -2.39 -0.02 1.66 16 35 H 0.42 6.60 8.06 -92.72 -0.75 5.85 16 36 H 0.23 1.47 8.06 -2.92 -0.02 1.44 16 37 H 0.12 3.60 8.03 -2.39 -0.02 3.58 16 38 H 0.08 2.95 4.91 -2.39 -0.01 2.94 16 39 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.17 7.15 -2.38 -0.02 2.15 16 Total: -1.00 -75.46 362.41 -2.00 -77.46 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.36 Total: 36.15 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.61 Total: 13.42 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -7.83 Total: -125.92 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.11 Total: -49.25 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.32 Total: 2.56 kcal Total: -75.46 -2.00 -77.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691219975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.197 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds