Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48504 * 109.47252 * 270.00767 * 3 2 1 5 5 H 1.48499 * 109.47190 * 30.00401 * 3 2 1 6 6 H 1.48500 * 109.46968 * 150.00620 * 3 2 1 7 7 C 1.38949 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99780 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99685 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99883 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99796 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47319 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00297 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.90853 * 336.24971 * 14 13 12 16 16 C 1.53780 * 113.61576 * 107.50338 * 14 13 12 17 17 C 1.53781 * 87.08245 * 139.97975 * 16 14 13 18 18 H 1.08997 * 113.68641 * 89.12669 * 17 16 14 19 19 C 1.53000 * 113.61469 * 220.01888 * 17 16 14 20 20 N 1.46501 * 109.47218 * 272.49865 * 19 17 16 21 21 C 1.34771 * 120.00240 * 180.02562 * 20 19 17 22 22 O 1.21627 * 119.99810 * 359.97438 * 21 20 19 23 23 C 1.47172 * 120.00234 * 180.02562 * 21 20 19 24 24 C 1.38243 * 128.47323 * 179.97438 * 23 21 20 25 25 N 1.31244 * 111.88623 * 180.02562 * 24 23 21 26 26 N 1.27330 * 120.03707 * 359.97438 * 25 24 23 27 27 S 1.56635 * 109.74470 * 0.02562 * 26 25 24 28 28 C 1.53778 * 87.08018 * 334.56800 * 17 16 14 29 29 H 0.97000 * 119.99994 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00239 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47467 * 59.99164 * 12 10 9 32 32 H 1.09002 * 109.47101 * 299.98976 * 12 10 9 33 33 H 1.00901 * 110.99675 * 303.95372 * 13 12 10 34 34 H 1.09004 * 113.61114 * 25.42973 * 16 14 13 35 35 H 1.08998 * 113.61786 * 254.52827 * 16 14 13 36 36 H 1.09002 * 109.47068 * 152.50040 * 19 17 16 37 37 H 1.09002 * 109.46847 * 32.50102 * 19 17 16 38 38 H 0.96999 * 119.99852 * 359.97438 * 20 19 17 39 39 H 1.08004 * 124.06051 * 0.03957 * 24 23 21 40 40 H 1.09005 * 113.61119 * 139.98093 * 28 17 16 41 41 H 1.08996 * 113.61554 * 270.87732 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3704 -0.0021 13 7 6.0506 -3.7553 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9675 -2.8870 -0.4076 16 6 8.1241 -4.2349 1.3400 17 6 9.1489 -5.0409 0.5246 18 1 10.0436 -4.4753 0.2641 19 6 9.4665 -6.4125 1.1235 20 7 10.5544 -6.2808 2.0958 21 6 11.0057 -7.3672 2.7534 22 8 10.5094 -8.4569 2.5400 23 6 12.0983 -7.2348 3.7305 24 6 12.6910 -8.2210 4.4968 25 7 13.6402 -7.7396 5.2647 26 7 13.9125 -6.4961 5.2379 27 16 12.9758 -5.7713 4.2129 28 6 8.1005 -5.0873 -0.5995 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0014 31 1 5.9242 -1.8572 0.8882 32 1 5.9241 -1.8559 -0.8917 33 1 5.6751 -4.2720 0.7784 34 1 7.4560 -4.8555 1.9373 35 1 8.5653 -3.4169 1.9094 36 1 9.7698 -7.0945 0.3291 37 1 8.5800 -6.8057 1.6212 38 1 10.9505 -5.4118 2.2657 39 1 12.4072 -9.2627 4.4669 40 1 8.5228 -4.9573 -1.5960 41 1 7.4261 -5.9409 -0.5326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691691003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = 31.822743 kcal Electronic energy + Delta-G solvation = -25041.899592 eV Core-core repulsion = 21085.582272 eV Total energy + Delta-G solvation = -3956.317320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42312 -40.33670 -39.39062 -38.27134 -35.43378 -34.17055 -33.42286 -32.67609 -31.67338 -29.22673 -27.70221 -26.42218 -25.91069 -24.06169 -23.34511 -21.75664 -21.26986 -20.17813 -19.71479 -19.30143 -18.31289 -18.05459 -16.70250 -16.54749 -16.15223 -16.00887 -15.64052 -15.42552 -15.12435 -14.85938 -14.67787 -14.38772 -13.98872 -13.61520 -13.29928 -13.08276 -12.76397 -12.67329 -12.63119 -12.54863 -12.24073 -11.93699 -11.73770 -11.26347 -11.17568 -10.98946 -10.86814 -10.70276 -10.65901 -10.62089 -10.55157 -10.46851 -9.99863 -9.67791 -9.60031 -8.61280 -8.21660 -8.13745 -6.33423 -3.85019 -0.88478 0.18012 0.86220 1.38196 2.35606 2.39679 2.99260 3.04201 3.12548 3.41915 3.70943 4.00474 4.02544 4.07860 4.09174 4.20818 4.33629 4.50217 4.66391 4.79776 4.95603 4.98991 5.08410 5.20018 5.26860 5.43675 5.51445 5.54415 5.59538 5.65255 5.74753 5.83581 5.88955 5.95139 6.13089 6.71264 7.03461 7.10408 7.43100 7.52785 7.56099 8.12110 8.57153 8.92575 9.39860 9.79958 10.79675 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.001627 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.378369 B =17210.644077 C =17779.634355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.657 5.657 14 C 0.068 3.932 15 H 0.096 0.904 16 C -0.167 4.167 17 C -0.127 4.127 18 H 0.097 0.903 19 C 0.130 3.870 20 N -0.717 5.717 21 C 0.600 3.400 22 O -0.513 6.513 23 C -0.288 4.288 24 C 0.076 3.924 25 N -0.250 5.250 26 N -0.253 5.253 27 S 0.421 5.579 28 C -0.115 4.115 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.353 0.647 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.400 0.600 39 H 0.217 0.783 40 H 0.072 0.928 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.544 -7.742 5.290 30.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.234 3.766 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.289 5.289 14 C -0.043 4.043 15 H 0.114 0.886 16 C -0.206 4.206 17 C -0.146 4.146 18 H 0.115 0.885 19 C 0.008 3.992 20 N -0.369 5.369 21 C 0.383 3.617 22 O -0.389 6.389 23 C -0.429 4.429 24 C -0.091 4.091 25 N -0.114 5.114 26 N -0.234 5.234 27 S 0.556 5.444 28 C -0.154 4.154 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 29.665 -7.884 5.269 31.143 hybrid contribution 0.207 0.978 0.605 1.169 sum 29.872 -6.905 5.875 31.217 Atomic orbital electron populations 1.69626 1.05642 1.27504 1.49302 1.25047 0.95500 0.97984 0.97651 0.86662 0.79707 0.84038 0.78895 1.19591 1.20194 1.19569 1.19437 0.79264 0.96646 1.48106 0.86281 1.42209 1.07539 1.06163 1.67075 1.19744 0.88264 0.84564 0.84036 1.90570 1.69454 1.30943 1.53706 1.21748 0.94989 0.90621 1.01151 1.59988 1.05167 1.12492 1.51203 1.22990 0.88122 0.98178 0.94983 0.88555 1.23883 0.98727 1.00097 0.97921 1.22694 0.98227 0.95083 0.98608 0.88496 1.21556 0.89175 0.97571 0.90935 1.45908 1.38297 1.09817 1.42881 1.16472 0.80812 0.84880 0.79585 1.90892 1.57465 1.25986 1.64509 1.28091 1.07603 0.98557 1.08627 1.24528 0.90777 1.03010 0.90753 1.70720 1.16240 1.03401 1.21075 1.78925 1.21828 1.04666 1.17981 1.82611 1.19015 1.16020 1.26762 1.23059 0.96058 0.99144 0.97152 0.91601 0.79711 0.93754 0.89501 0.82569 0.89377 0.91417 0.90531 0.90353 0.76573 0.76623 0.90893 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 2 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 3 Si 0.88 19.00 27.73 -169.99 -4.71 14.29 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.76 5.09 -10.97 -0.06 -13.81 16 10 C 0.45 9.88 7.82 -10.99 -0.09 9.80 16 11 O -0.56 -14.91 15.78 5.55 0.09 -14.82 16 12 C 0.05 0.73 6.01 -4.98 -0.03 0.70 16 13 N -0.66 -9.19 6.24 -107.13 -0.67 -9.86 16 14 C 0.07 0.64 4.18 -66.90 -0.28 0.36 16 15 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 16 C -0.17 -1.20 7.25 -25.92 -0.19 -1.39 16 17 C -0.13 -0.72 3.75 -89.81 -0.34 -1.06 16 18 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 19 C 0.13 0.84 5.51 -4.04 -0.02 0.82 16 20 N -0.72 -4.04 5.55 -61.46 -0.34 -4.38 16 21 C 0.60 4.71 7.80 -12.64 -0.10 4.61 16 22 O -0.51 -5.89 16.98 5.25 0.09 -5.80 16 23 C -0.29 -1.84 6.81 -35.95 -0.25 -2.09 16 24 C 0.08 0.52 11.55 -17.80 -0.21 0.32 16 25 N -0.25 -2.14 11.54 30.36 0.35 -1.79 16 26 N -0.25 -2.05 12.51 60.35 0.75 -1.29 16 27 S 0.42 2.00 23.05 -107.50 -2.48 -0.48 16 28 C -0.12 -0.91 7.44 -25.92 -0.19 -1.11 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.19 8.13 -51.93 -0.42 0.77 16 33 H 0.35 5.20 7.90 -39.29 -0.31 4.89 16 34 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.61 7.84 -51.93 -0.41 0.20 16 38 H 0.40 1.25 7.90 -40.82 -0.32 0.93 16 39 H 0.22 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -35.46 368.50 -7.59 -43.06 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.01 Total: 10.79 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.93 Total: 3.27 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.81 Total: -55.87 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.18 Total: -20.62 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.48 Total: -0.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.46 -7.59 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.881 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds