Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48504 * 109.47252 * 270.00767 * 3 2 1 5 5 H 1.48499 * 109.47190 * 30.00401 * 3 2 1 6 6 H 1.48500 * 109.46968 * 150.00620 * 3 2 1 7 7 C 1.38949 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 359.97438 * 7 2 1 9 9 N 1.37094 * 119.99780 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99685 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99883 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99796 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47319 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00297 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.90853 * 336.24971 * 14 13 12 16 16 C 1.53780 * 113.61576 * 107.50338 * 14 13 12 17 17 C 1.53781 * 87.08245 * 139.97975 * 16 14 13 18 18 H 1.08997 * 113.68641 * 89.12669 * 17 16 14 19 19 C 1.53000 * 113.61469 * 220.01888 * 17 16 14 20 20 N 1.46501 * 109.47218 * 272.49865 * 19 17 16 21 21 C 1.34771 * 120.00240 * 180.02562 * 20 19 17 22 22 O 1.21627 * 119.99810 * 359.97438 * 21 20 19 23 23 C 1.47172 * 120.00234 * 180.02562 * 21 20 19 24 24 C 1.38243 * 128.47323 * 179.97438 * 23 21 20 25 25 N 1.31244 * 111.88623 * 180.02562 * 24 23 21 26 26 N 1.27330 * 120.03707 * 359.97438 * 25 24 23 27 27 S 1.56635 * 109.74470 * 0.02562 * 26 25 24 28 28 C 1.53778 * 87.08018 * 334.56800 * 17 16 14 29 29 H 0.97000 * 119.99994 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00239 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47467 * 59.99164 * 12 10 9 32 32 H 1.09002 * 109.47101 * 299.98976 * 12 10 9 33 33 H 1.00901 * 110.99675 * 303.95372 * 13 12 10 34 34 H 1.09004 * 113.61114 * 25.42973 * 16 14 13 35 35 H 1.08998 * 113.61786 * 254.52827 * 16 14 13 36 36 H 1.09002 * 109.47068 * 152.50040 * 19 17 16 37 37 H 1.09002 * 109.46847 * 32.50102 * 19 17 16 38 38 H 0.96999 * 119.99852 * 359.97438 * 20 19 17 39 39 H 1.08004 * 124.06051 * 0.03957 * 24 23 21 40 40 H 1.09005 * 113.61119 * 139.98093 * 28 17 16 41 41 H 1.08996 * 113.61554 * 270.87732 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3704 -0.0021 13 7 6.0506 -3.7553 -0.0027 14 6 7.5190 -3.7945 -0.0034 15 1 7.9675 -2.8870 -0.4076 16 6 8.1241 -4.2349 1.3400 17 6 9.1489 -5.0409 0.5246 18 1 10.0436 -4.4753 0.2641 19 6 9.4665 -6.4125 1.1235 20 7 10.5544 -6.2808 2.0958 21 6 11.0057 -7.3672 2.7534 22 8 10.5094 -8.4569 2.5400 23 6 12.0983 -7.2348 3.7305 24 6 12.6910 -8.2210 4.4968 25 7 13.6402 -7.7396 5.2647 26 7 13.9125 -6.4961 5.2379 27 16 12.9758 -5.7713 4.2129 28 6 8.1005 -5.0873 -0.5995 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0014 31 1 5.9242 -1.8572 0.8882 32 1 5.9241 -1.8559 -0.8917 33 1 5.6751 -4.2720 0.7784 34 1 7.4560 -4.8555 1.9373 35 1 8.5653 -3.4169 1.9094 36 1 9.7698 -7.0945 0.3291 37 1 8.5800 -6.8057 1.6212 38 1 10.9505 -5.4118 2.2657 39 1 12.4072 -9.2627 4.4669 40 1 8.5228 -4.9573 -1.5960 41 1 7.4261 -5.9409 -0.5326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691691003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = 1.221446 kcal Electronic energy + Delta-G solvation = -25043.226564 eV Core-core repulsion = 21085.582272 eV Total energy + Delta-G solvation = -3957.644292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94750 -40.96965 -40.37356 -39.72344 -36.29826 -35.89472 -34.52174 -33.71395 -33.21537 -29.92619 -28.61304 -27.56094 -26.49755 -25.60094 -24.01789 -22.42802 -21.85597 -21.34282 -20.74741 -20.29982 -19.94602 -18.60739 -17.71100 -17.25579 -17.09128 -16.98671 -16.55931 -16.47505 -16.12306 -15.86392 -15.53582 -15.40589 -15.10551 -14.91567 -14.51370 -14.07484 -14.05278 -13.84712 -13.59208 -13.27829 -13.05959 -13.01294 -12.82623 -12.62716 -12.40107 -11.98240 -11.87551 -11.61723 -11.50349 -11.38846 -11.26115 -11.21280 -11.16117 -10.94582 -10.40001 -10.23881 -10.23161 -9.16313 -8.40396 -6.01633 -1.38703 -0.27013 0.39477 0.84911 1.30920 1.37342 1.46122 1.80498 1.83679 1.97754 2.24403 2.79404 2.93396 3.16095 3.43844 3.53067 3.60259 3.65451 3.77077 3.97560 4.09314 4.21372 4.30171 4.47932 4.51526 4.55173 4.61156 4.74637 4.88684 4.95008 4.98648 5.11039 5.23807 5.33109 5.48877 5.56628 5.94239 6.21991 6.23525 6.45575 6.54412 6.61415 6.89433 6.90930 7.41283 7.98651 8.77354 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.001627 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.378369 B =17210.644077 C =17779.634355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.591 5.591 10 C 0.445 3.555 11 O -0.618 6.618 12 C 0.064 3.936 13 N -0.681 5.681 14 C 0.061 3.939 15 H 0.117 0.883 16 C -0.161 4.161 17 C -0.103 4.103 18 H 0.128 0.872 19 C 0.132 3.868 20 N -0.702 5.702 21 C 0.602 3.398 22 O -0.556 6.556 23 C -0.303 4.303 24 C 0.074 3.926 25 N -0.279 5.279 26 N -0.292 5.292 27 S 0.514 5.486 28 C -0.120 4.120 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.227 0.773 40 H 0.081 0.919 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.426 -4.590 5.193 34.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.151 1.151 7 C -0.460 4.460 8 H 0.071 0.929 9 N -0.233 5.233 10 C 0.233 3.767 11 O -0.502 6.502 12 C -0.069 4.069 13 N -0.312 5.312 14 C -0.048 4.048 15 H 0.135 0.865 16 C -0.201 4.201 17 C -0.122 4.122 18 H 0.146 0.854 19 C 0.009 3.991 20 N -0.354 5.354 21 C 0.385 3.615 22 O -0.435 6.435 23 C -0.444 4.444 24 C -0.094 4.094 25 N -0.141 5.141 26 N -0.273 5.273 27 S 0.649 5.351 28 C -0.159 4.159 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 33.611 -4.704 5.179 34.332 hybrid contribution -1.077 -0.080 0.582 1.227 sum 32.534 -4.784 5.761 33.385 Atomic orbital electron populations 1.69817 1.08236 1.29255 1.50321 1.26164 0.96493 1.02859 0.96028 0.85331 0.79524 0.76472 0.79956 1.18148 1.20163 1.15139 1.19009 0.81682 0.94863 1.50429 0.92915 1.42034 1.05714 1.07694 1.67820 1.21167 0.91347 0.83207 0.80952 1.90548 1.71559 1.32933 1.55181 1.21679 0.88979 0.92266 1.03946 1.60012 1.08242 1.11641 1.51293 1.23228 0.85249 0.99556 0.96805 0.86466 1.23800 0.98618 1.00578 0.97063 1.22587 0.98488 0.94406 0.96731 0.85432 1.21472 0.88706 0.98149 0.90810 1.45767 1.37624 1.10057 1.41971 1.16613 0.80700 0.84622 0.79524 1.90874 1.59002 1.27670 1.65983 1.27999 1.07733 1.00033 1.08658 1.24751 0.90427 1.03784 0.90464 1.70778 1.17289 1.03828 1.22248 1.78648 1.23695 1.05021 1.19958 1.82165 1.16060 1.13162 1.23726 1.23053 0.96504 0.97890 0.98475 0.91177 0.77394 0.90371 0.86699 0.83677 0.90912 0.89372 0.90903 0.92112 0.74773 0.75687 0.90023 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 13.96 21.66 0.30 -55.87 16 2 C -0.02 -0.94 5.50 84.92 0.47 -0.47 16 3 Si 0.97 37.81 27.73 68.60 1.90 39.71 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -27.18 5.09 -306.99 -1.56 -28.75 16 10 C 0.45 19.52 7.82 87.66 0.69 20.21 16 11 O -0.62 -33.97 15.78 -3.07 -0.05 -34.02 16 12 C 0.06 1.76 6.01 85.56 0.51 2.27 16 13 N -0.68 -17.89 6.24 -492.87 -3.08 -20.96 16 14 C 0.06 0.95 4.18 45.44 0.19 1.14 16 15 H 0.12 1.37 7.87 -2.39 -0.02 1.35 16 16 C -0.16 -1.79 7.25 31.12 0.23 -1.56 16 17 C -0.10 -0.82 3.75 -10.27 -0.04 -0.86 16 18 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 19 C 0.13 1.47 5.51 86.38 0.48 1.94 16 20 N -0.70 -6.22 5.55 -466.62 -2.59 -8.81 16 21 C 0.60 8.72 7.80 86.59 0.68 9.40 16 22 O -0.56 -12.80 16.98 -4.12 -0.07 -12.87 16 23 C -0.30 -3.44 6.81 24.62 0.17 -3.27 16 24 C 0.07 0.97 11.55 84.78 0.98 1.95 16 25 N -0.28 -4.61 11.54 -57.86 -0.67 -5.28 16 26 N -0.29 -4.33 12.51 37.02 0.46 -3.86 16 27 S 0.51 3.53 23.05 -56.49 -1.30 2.23 16 28 C -0.12 -1.64 7.44 31.12 0.23 -1.41 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.39 14.58 5.76 -92.71 -0.53 14.05 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.12 2.60 8.13 -2.39 -0.02 2.59 16 33 H 0.34 10.04 7.90 -89.69 -0.71 9.33 16 34 H 0.07 1.07 7.58 -2.38 -0.02 1.05 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.93 7.84 -2.39 -0.02 0.91 16 38 H 0.42 1.01 7.90 -92.71 -0.73 0.27 16 39 H 0.23 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 Total: -1.00 -85.29 368.50 -2.14 -87.43 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.92 Total: 30.12 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.43 Total: 10.94 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -7.13 Total: -123.54 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.12 Total: -46.89 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 1.90 Total: 39.71 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.30 Total: 2.23 kcal Total: -85.29 -2.14 -87.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691691003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.656 kcal (2) G-P(sol) polarization free energy of solvation -85.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds