Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46501 * 114.17328 * 272.37897 * 15 14 13 17 17 C 1.34773 * 119.99945 * 248.83855 * 16 15 14 18 18 O 1.21551 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.47867 * 119.99832 * 179.97438 * 17 16 15 20 20 C 1.39541 * 120.11973 * 359.72486 * 19 17 16 21 21 C 1.38210 * 119.87542 * 179.81167 * 20 19 17 22 22 F 1.35106 * 119.93726 * 180.22762 * 21 20 19 23 23 C 1.38524 * 120.12053 * 0.44554 * 21 20 19 24 24 C 1.38531 * 120.24522 * 359.78279 * 23 21 20 25 25 F 1.35095 * 119.94101 * 179.97438 * 24 23 21 26 26 C 1.38210 * 120.12011 * 0.02562 * 24 23 21 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.08999 * 114.34478 * 139.68125 * 15 14 13 35 35 H 0.96996 * 119.99711 * 68.84074 * 16 15 14 36 36 H 1.08006 * 120.06196 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.87849 * 179.76466 * 23 21 20 38 38 H 1.07998 * 120.05878 * 179.97438 * 26 24 23 39 39 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 40 40 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 3.6899 -8.3844 -0.3507 17 6 4.3355 -9.3603 -1.0194 18 8 3.8537 -9.8224 -2.0352 19 6 5.6301 -9.8688 -0.5175 20 6 6.1884 -9.3362 0.6452 21 6 7.3967 -9.8180 1.1120 22 9 7.9361 -9.3063 2.2401 23 6 8.0579 -10.8214 0.4229 24 6 7.5106 -11.3505 -0.7345 25 9 8.1610 -12.3285 -1.4020 26 6 6.3009 -10.8789 -1.2082 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 1.8943 -8.5828 -1.5047 35 1 4.0742 -8.0159 0.4601 36 1 5.6754 -8.5512 1.1812 37 1 9.0038 -11.1923 0.7891 38 1 5.8753 -11.2918 -2.1108 39 1 1.6894 -7.6711 1.2299 40 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692261222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = -85.819544 kcal Electronic energy + Delta-G solvation = -27722.405546 eV Core-core repulsion = 23174.853735 eV Total energy + Delta-G solvation = -4547.551810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47945 -49.44275 -40.96561 -39.83177 -38.28995 -37.68782 -34.35007 -33.85636 -31.84711 -31.25877 -30.86738 -29.70104 -26.01653 -25.90824 -24.83883 -23.62562 -23.20617 -21.32820 -20.05025 -19.32662 -18.93144 -17.91641 -17.70120 -16.97844 -16.78576 -16.49198 -16.37970 -16.10484 -15.93654 -15.75546 -15.44901 -15.25030 -14.91509 -14.79269 -14.59735 -14.30177 -13.75819 -13.37639 -13.22396 -13.18275 -12.79145 -12.51739 -12.36486 -12.33783 -12.12705 -11.62530 -11.50345 -11.25187 -11.09649 -10.76912 -10.39905 -10.35643 -10.23642 -9.69151 -9.52656 -9.31966 -9.27530 -8.89029 -8.24612 -7.97766 -6.43289 -3.83999 0.03186 0.42114 2.21785 2.62907 3.10913 3.15067 3.25699 3.32822 3.33159 3.77980 3.87544 3.93242 4.02593 4.18296 4.22963 4.32587 4.43928 4.46223 4.76355 4.91897 4.96181 5.15753 5.21451 5.30695 5.31734 5.36010 5.38160 5.49696 5.52931 5.58857 5.60634 5.66562 5.93006 6.13818 6.21693 6.27811 6.44292 7.02929 7.19700 7.53926 7.82711 8.04624 8.60294 9.17102 9.53012 10.05083 10.74617 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002060 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.321653 B =13587.979292 C =14557.700507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.576 6.576 12 C 0.008 3.992 13 N -0.441 5.441 14 C -0.008 4.008 15 C 0.115 3.885 16 N -0.690 5.690 17 C 0.564 3.436 18 O -0.529 6.529 19 C -0.072 4.072 20 C -0.130 4.130 21 C 0.129 3.871 22 F -0.124 7.124 23 C -0.169 4.169 24 C 0.125 3.875 25 F -0.126 7.126 26 C -0.106 4.106 27 C -0.014 4.014 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.410 0.590 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -23.093 1.051 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.459 6.459 12 C -0.124 4.124 13 N -0.163 5.163 14 C -0.138 4.138 15 C 0.009 3.991 16 N -0.341 5.341 17 C 0.350 3.650 18 O -0.406 6.406 19 C -0.076 4.076 20 C -0.149 4.149 21 C 0.109 3.891 22 F -0.103 7.103 23 C -0.189 4.189 24 C 0.106 3.894 25 F -0.104 7.104 26 C -0.126 4.126 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.247 0.753 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.108 0.892 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.382 -22.996 0.794 24.489 hybrid contribution -0.572 1.024 0.079 1.175 sum 7.810 -21.973 0.873 23.335 Atomic orbital electron populations 1.69618 1.05925 1.28031 1.50849 1.25259 0.95647 0.99716 0.97412 0.85805 0.79714 0.81157 0.77710 1.19233 1.20762 1.20746 1.19735 0.93355 0.82205 1.47389 0.87929 1.41881 1.09145 1.04618 1.64764 1.19653 0.88386 0.84375 0.84493 1.90524 1.13649 1.86964 1.54759 1.22510 0.94684 0.93049 1.02193 1.68835 1.30708 1.00128 1.16637 1.24379 1.03881 0.93143 0.92423 1.22043 0.84443 0.95527 0.97083 1.45413 1.22025 1.37565 1.29126 1.17937 0.83871 0.79539 0.83673 1.90805 1.67113 1.58670 1.24020 1.19525 0.95595 0.97283 0.95172 1.21456 0.95206 1.01351 0.96917 1.17068 0.92714 0.94643 0.84626 1.91590 1.85421 1.85511 1.47743 1.21251 1.02856 0.98774 0.96033 1.17078 0.91688 0.89000 0.91677 1.91567 1.80427 1.59212 1.79242 1.21292 0.93268 0.96544 1.01458 1.24303 0.97835 0.91949 1.00288 0.91946 0.77559 0.89283 0.92033 0.90231 0.89006 0.86807 0.75329 0.83101 0.82837 0.82477 0.89153 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.45 10.34 7.85 -10.98 -0.09 10.26 16 11 O -0.58 -15.54 16.01 5.54 0.09 -15.45 16 12 C 0.01 0.13 5.30 -4.98 -0.03 0.10 16 13 N -0.44 -6.55 5.82 -246.13 -1.43 -7.98 16 14 C -0.01 -0.11 7.52 -7.56 -0.06 -0.17 16 15 C 0.12 1.24 4.60 -67.72 -0.31 0.93 16 16 N -0.69 -7.06 5.34 -54.48 -0.29 -7.35 16 17 C 0.56 6.24 7.77 -12.32 -0.10 6.14 16 18 O -0.53 -7.38 15.94 5.32 0.08 -7.29 16 19 C -0.07 -0.66 5.87 -104.98 -0.62 -1.28 16 20 C -0.13 -1.03 9.52 -39.11 -0.37 -1.41 16 21 C 0.13 1.03 7.29 -39.49 -0.29 0.75 16 22 F -0.12 -1.11 17.26 2.25 0.04 -1.07 16 23 C -0.17 -1.22 10.00 -39.37 -0.39 -1.61 16 24 C 0.13 1.00 7.29 -39.48 -0.29 0.71 16 25 F -0.13 -1.07 17.26 2.25 0.04 -1.03 16 26 C -0.11 -0.92 9.57 -39.11 -0.37 -1.29 16 27 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 30 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 32 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.11 1.18 7.45 -51.93 -0.39 0.79 16 35 H 0.41 3.72 6.79 -40.82 -0.28 3.44 16 36 H 0.15 1.00 6.40 -52.48 -0.34 0.67 16 37 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.16 1.34 7.65 -52.49 -0.40 0.94 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -33.20 358.75 -7.73 -40.93 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.10 Total: 10.79 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.21 Total: 5.01 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -1.06 Total: -53.25 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.08 Total: -2.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -7.73 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692261222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.890 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds