Wall clock time and date at job start Tue Mar 31 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46501 * 114.17328 * 272.37897 * 15 14 13 17 17 C 1.34773 * 119.99945 * 248.83855 * 16 15 14 18 18 O 1.21551 * 120.00292 * 359.97438 * 17 16 15 19 19 C 1.47867 * 119.99832 * 179.97438 * 17 16 15 20 20 C 1.39541 * 120.11973 * 359.72486 * 19 17 16 21 21 C 1.38210 * 119.87542 * 179.81167 * 20 19 17 22 22 F 1.35106 * 119.93726 * 180.22762 * 21 20 19 23 23 C 1.38524 * 120.12053 * 0.44554 * 21 20 19 24 24 C 1.38531 * 120.24522 * 359.78279 * 23 21 20 25 25 F 1.35095 * 119.94101 * 179.97438 * 24 23 21 26 26 C 1.38210 * 120.12011 * 0.02562 * 24 23 21 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.08999 * 114.34478 * 139.68125 * 15 14 13 35 35 H 0.96996 * 119.99711 * 68.84074 * 16 15 14 36 36 H 1.08006 * 120.06196 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.87849 * 179.76466 * 23 21 20 38 38 H 1.07998 * 120.05878 * 179.97438 * 26 24 23 39 39 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 40 40 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 3.6899 -8.3844 -0.3507 17 6 4.3355 -9.3603 -1.0194 18 8 3.8537 -9.8224 -2.0352 19 6 5.6301 -9.8688 -0.5175 20 6 6.1884 -9.3362 0.6452 21 6 7.3967 -9.8180 1.1120 22 9 7.9361 -9.3063 2.2401 23 6 8.0579 -10.8214 0.4229 24 6 7.5106 -11.3505 -0.7345 25 9 8.1610 -12.3285 -1.4020 26 6 6.3009 -10.8789 -1.2082 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 1.8943 -8.5828 -1.5047 35 1 4.0742 -8.0159 0.4601 36 1 5.6754 -8.5512 1.1812 37 1 9.0038 -11.1923 0.7891 38 1 5.8753 -11.2918 -2.1108 39 1 1.6894 -7.6711 1.2299 40 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692261222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:13 Heat of formation + Delta-G solvation = -111.063839 kcal Electronic energy + Delta-G solvation = -27723.500221 eV Core-core repulsion = 23174.853735 eV Total energy + Delta-G solvation = -4548.646485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.13210 -50.10689 -41.90142 -40.79292 -39.63705 -38.91074 -35.95581 -35.20583 -33.28387 -32.56656 -31.57126 -30.86411 -27.46380 -26.93532 -25.96187 -24.85155 -23.91784 -22.13036 -21.25093 -20.77841 -19.92717 -19.69673 -18.40557 -17.81225 -17.64570 -17.55131 -17.19086 -17.13251 -16.80697 -16.57281 -16.47929 -16.41619 -16.35216 -15.92125 -15.59215 -15.48456 -15.27431 -14.82663 -14.50975 -13.91152 -13.74440 -13.67987 -13.49512 -13.15940 -13.08354 -12.99347 -12.98298 -12.59239 -12.44163 -12.29972 -12.11280 -11.82919 -11.49907 -11.31946 -10.40396 -10.37515 -10.12284 -9.99952 -9.97308 -9.72329 -8.46695 -5.94888 -0.64253 -0.22782 1.35960 1.41096 1.45406 1.54951 1.82828 2.07853 2.28608 2.37345 2.66972 2.85760 3.12072 3.19862 3.33175 3.33480 3.54757 3.59468 3.78101 3.80191 3.83920 4.17074 4.24867 4.31441 4.42898 4.50334 4.55896 4.57542 4.63147 4.70154 4.74938 4.81355 4.84060 4.87755 5.34063 5.38708 5.41442 5.51216 5.86767 6.07246 6.36378 6.61704 6.98509 7.14282 7.58467 8.15097 8.70937 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002060 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.321653 B =13587.979292 C =14557.700507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.441 3.559 11 O -0.620 6.620 12 C 0.021 3.979 13 N -0.471 5.471 14 C -0.015 4.015 15 C 0.125 3.875 16 N -0.686 5.686 17 C 0.565 3.435 18 O -0.562 6.562 19 C -0.083 4.083 20 C -0.122 4.122 21 C 0.122 3.878 22 F -0.129 7.129 23 C -0.155 4.155 24 C 0.122 3.878 25 F -0.129 7.129 26 C -0.107 4.107 27 C 0.001 3.999 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.415 0.585 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.106 0.894 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 -23.825 1.765 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.215 5.215 10 C 0.229 3.771 11 O -0.505 6.505 12 C -0.111 4.111 13 N -0.193 5.193 14 C -0.145 4.145 15 C 0.019 3.981 16 N -0.337 5.337 17 C 0.353 3.647 18 O -0.442 6.442 19 C -0.086 4.086 20 C -0.142 4.142 21 C 0.102 3.898 22 F -0.107 7.107 23 C -0.174 4.174 24 C 0.102 3.898 25 F -0.107 7.107 26 C -0.127 4.127 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.253 0.747 36 H 0.180 0.820 37 H 0.193 0.807 38 H 0.173 0.827 39 H 0.125 0.875 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.876 -23.738 1.528 25.057 hybrid contribution -0.371 1.196 -0.143 1.260 sum 7.505 -22.542 1.385 23.799 Atomic orbital electron populations 1.69670 1.06722 1.29150 1.50632 1.26006 0.96561 1.02314 0.96474 0.84902 0.77989 0.77295 0.78347 1.19967 1.19633 1.19547 1.19646 0.92550 0.84133 1.49683 0.90634 1.41963 1.09300 1.04728 1.65544 1.20880 0.88293 0.86018 0.81927 1.90490 1.15983 1.87969 1.56093 1.22401 0.94381 0.89856 1.04431 1.68789 1.31695 1.01359 1.17489 1.24447 1.02693 0.95074 0.92309 1.21972 0.84761 0.94093 0.97289 1.45423 1.21977 1.37167 1.29119 1.18168 0.84208 0.79203 0.83115 1.90785 1.68071 1.59856 1.25441 1.19336 0.95166 0.98117 0.95979 1.21536 0.95168 1.01134 0.96327 1.17101 0.92858 0.95078 0.84713 1.91582 1.85479 1.85654 1.48012 1.21435 1.03242 0.97679 0.95088 1.17044 0.91538 0.89167 0.92009 1.91563 1.80420 1.59342 1.79375 1.21325 0.93556 0.96407 1.01368 1.24361 0.98796 0.88674 1.00979 0.91351 0.76993 0.86884 0.89628 0.89039 0.92090 0.85946 0.74663 0.82005 0.80689 0.82748 0.87547 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.59 16 9 N -0.58 -29.26 5.29 -306.98 -1.62 -30.88 16 10 C 0.44 20.60 7.85 87.66 0.69 21.29 16 11 O -0.62 -34.32 16.01 -3.08 -0.05 -34.37 16 12 C 0.02 0.66 5.30 85.56 0.45 1.11 16 13 N -0.47 -13.24 5.82 -932.63 -5.43 -18.67 16 14 C -0.01 -0.39 7.52 83.57 0.63 0.24 16 15 C 0.13 2.48 4.60 45.44 0.21 2.69 16 16 N -0.69 -13.34 5.34 -444.56 -2.37 -15.71 16 17 C 0.57 12.26 7.77 86.79 0.67 12.93 16 18 O -0.56 -15.60 15.94 -3.88 -0.06 -15.67 16 19 C -0.08 -1.46 5.87 -20.10 -0.12 -1.57 16 20 C -0.12 -1.82 9.52 22.58 0.21 -1.60 16 21 C 0.12 1.78 7.29 22.33 0.16 1.95 16 22 F -0.13 -2.12 17.26 44.97 0.78 -1.34 16 23 C -0.15 -1.96 10.00 22.41 0.22 -1.74 16 24 C 0.12 1.82 7.29 22.33 0.16 1.98 16 25 F -0.13 -2.05 17.26 44.97 0.78 -1.27 16 26 C -0.11 -1.80 9.57 22.58 0.22 -1.59 16 27 C 0.00 0.01 7.45 83.57 0.62 0.64 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 30 H 0.11 3.02 8.08 -2.39 -0.02 3.00 16 31 H 0.09 2.29 7.30 -2.39 -0.02 2.27 16 32 H 0.09 2.14 7.42 -2.39 -0.02 2.12 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.12 2.30 7.45 -2.39 -0.02 2.28 16 35 H 0.42 7.07 6.79 -92.71 -0.63 6.44 16 36 H 0.16 1.96 6.40 -2.91 -0.02 1.95 16 37 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.15 2.65 7.65 -2.91 -0.02 2.63 16 39 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.11 1.42 7.91 -2.39 -0.02 1.41 16 Total: -1.00 -72.99 358.75 -0.48 -73.47 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.23 Total: 30.40 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 5.42 Total: 18.10 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -9.14 Total: -114.32 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.11 Total: -50.04 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 1.55 Total: -2.61 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.99 -0.48 -73.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692261222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.590 kcal (2) G-P(sol) polarization free energy of solvation -72.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds