Wall clock time and date at job start Tue Mar 31 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.88214 * 2 1 4 4 C 1.55124 * 111.19018 * 236.06607 * 2 1 3 5 5 N 1.47424 * 104.72581 * 279.18782 * 4 2 1 6 6 C 1.34777 * 125.65218 * 155.81636 * 5 4 2 7 7 O 1.21623 * 120.00245 * 179.69695 * 6 5 4 8 8 C 1.47171 * 119.99849 * 359.42447 * 6 5 4 9 9 C 1.38239 * 128.47836 * 180.27483 * 8 6 5 10 10 N 1.31238 * 111.89145 * 179.97438 * 9 8 6 11 11 N 1.27341 * 120.03768 * 0.02562 * 10 9 8 12 12 S 1.56641 * 109.73793 * 359.73046 * 11 10 9 13 13 C 1.47028 * 108.70186 * 335.55873 * 5 4 2 14 14 C 1.54322 * 107.26990 * 1.28397 * 13 5 4 15 15 H 1.09001 * 110.71973 * 263.82619 * 14 13 5 16 16 N 1.46898 * 110.71900 * 140.55832 * 14 13 5 17 17 C 1.46905 * 111.00287 * 86.45375 * 16 14 13 18 18 C 1.50700 * 109.47101 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00034 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99912 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00081 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99783 * 0.02562 * 21 20 18 23 23 C 1.38943 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00018 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46840 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46977 * 120.00088 * 25 23 21 28 28 H 1.48500 * 109.47368 * 240.00506 * 25 23 21 29 29 H 1.08999 * 109.47388 * 296.11833 * 1 2 3 30 30 H 1.08999 * 109.47469 * 56.12292 * 1 2 3 31 31 H 1.09001 * 109.47312 * 176.12141 * 1 2 3 32 32 H 1.09007 * 110.49220 * 160.35187 * 4 2 1 33 33 H 1.09000 * 110.34724 * 37.95444 * 4 2 1 34 34 H 1.08003 * 124.05388 * 359.97438 * 9 8 6 35 35 H 1.09003 * 109.88466 * 120.70046 * 13 5 4 36 36 H 1.08998 * 109.88121 * 241.71192 * 13 5 4 37 37 H 1.00897 * 110.99978 * 322.49545 * 16 14 13 38 38 H 1.09001 * 109.46657 * 300.00101 * 17 16 14 39 39 H 1.09000 * 109.46775 * 59.99947 * 17 16 14 40 40 H 0.97006 * 119.99731 * 0.02562 * 20 18 17 41 41 H 0.97004 * 119.99970 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2836 -1.5927 7 8 1.8925 -4.4058 -1.1271 8 6 1.9343 -3.0907 -3.0517 9 6 1.8651 -4.0492 -4.0454 10 7 1.8749 -3.5135 -5.2434 11 7 1.9430 -2.2488 -5.3757 12 16 1.9971 -1.5715 -3.9643 13 6 2.0285 -2.2644 0.6970 14 6 2.0861 -0.8075 1.2026 15 1 3.1133 -0.5155 1.4212 16 7 1.2320 -0.6335 2.3850 17 6 1.9591 -0.9758 3.6147 18 6 1.0530 -0.7849 4.8037 19 8 -0.0862 -0.4011 4.6425 20 7 1.5085 -1.0408 6.0460 21 6 0.6844 -0.8667 7.1277 22 1 -0.3299 -0.5249 6.9842 23 6 1.1540 -1.1309 8.4084 24 7 2.3881 -1.5473 8.5829 25 14 0.0309 -0.8944 9.8823 26 1 -1.2993 -0.4225 9.4204 27 1 -0.1240 -2.1859 10.5989 28 1 0.6228 0.1126 10.7992 29 1 -0.3634 0.4524 0.9227 30 1 -0.3634 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1253 -0.5271 -1.3985 33 1 1.4764 -0.6458 -2.0858 34 1 1.8096 -5.1115 -3.8583 35 1 1.1218 -2.7476 1.0611 36 1 2.9049 -2.8136 1.0411 37 1 0.3854 -1.1763 2.3025 38 1 2.2833 -2.0154 3.5676 39 1 2.8298 -0.3277 3.7142 40 1 2.4198 -1.3474 6.1749 41 1 2.7158 -1.7321 9.4770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700256510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:13 Heat of formation + Delta-G solvation = 18.449599 kcal Electronic energy + Delta-G solvation = -26392.864815 eV Core-core repulsion = 22435.967592 eV Total energy + Delta-G solvation = -3956.897223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26310 -40.62875 -38.67013 -37.96000 -34.98576 -33.89259 -32.65046 -32.34406 -31.26129 -29.46193 -27.97860 -27.02524 -26.26291 -24.36736 -23.41177 -22.53551 -20.28985 -20.00616 -19.60188 -19.33464 -18.00925 -17.62972 -16.86043 -16.47362 -16.07054 -16.04769 -15.46754 -15.19559 -14.71343 -14.58820 -14.41105 -14.04924 -13.84924 -13.70482 -13.27410 -13.00784 -12.97524 -12.80204 -12.45024 -12.33494 -12.24916 -11.79159 -11.58023 -11.41177 -11.17745 -11.09341 -11.07509 -10.60671 -10.54821 -10.40912 -10.37557 -10.27197 -10.25613 -9.56739 -9.18201 -8.57984 -8.22868 -8.01442 -6.46267 -3.87230 -0.73104 0.32291 1.02002 1.53137 2.29574 2.52182 3.13402 3.24573 3.31416 3.52704 3.82460 3.84155 3.97695 4.05063 4.20393 4.24311 4.41214 4.65667 4.80405 4.85669 4.93302 5.05821 5.12540 5.20782 5.30149 5.36679 5.44141 5.52717 5.68351 5.71656 5.80517 5.88452 5.95913 6.18463 6.28168 6.84968 7.01519 7.19468 7.42573 7.51327 7.51778 8.01216 8.55437 9.13158 9.48780 9.99390 10.71328 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.002017 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.846349 B =13875.273701 C =14301.313484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.103 0.897 4 C 0.087 3.913 5 N -0.603 5.603 6 C 0.613 3.387 7 O -0.515 6.515 8 C -0.284 4.284 9 C 0.073 3.927 10 N -0.251 5.251 11 N -0.271 5.271 12 S 0.432 5.568 13 C 0.079 3.921 14 C 0.081 3.919 15 H 0.100 0.900 16 N -0.648 5.648 17 C 0.046 3.954 18 C 0.439 3.561 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.216 0.784 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.355 0.645 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.886 1.192 -23.158 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.038 4.038 5 N -0.337 5.337 6 C 0.398 3.602 7 O -0.391 6.391 8 C -0.425 4.425 9 C -0.094 4.094 10 N -0.115 5.115 11 N -0.252 5.252 12 S 0.568 5.432 13 C -0.045 4.045 14 C -0.031 4.031 15 H 0.118 0.882 16 N -0.280 5.280 17 C -0.086 4.086 18 C 0.225 3.775 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.233 0.767 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.176 0.824 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.226 0.774 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.336 2.765 -24.233 24.617 hybrid contribution 0.178 -2.411 1.605 2.902 sum 3.514 0.353 -22.628 22.902 Atomic orbital electron populations 1.21712 0.93289 1.01903 1.03424 1.22379 0.97480 0.99219 0.91453 0.87923 1.22908 1.01742 0.80621 0.98545 1.48173 1.72078 1.05962 1.07537 1.16082 0.77601 0.84001 0.82516 1.90890 1.49927 1.22624 1.75649 1.27976 1.15977 0.98202 1.00297 1.24504 0.96842 1.03236 0.84771 1.70812 1.15255 1.02067 1.23390 1.78748 1.18911 1.05347 1.22157 1.82879 1.50599 1.13978 0.95744 1.23051 1.03194 1.00027 0.78236 1.22750 0.98396 0.90946 0.91001 0.88179 1.60217 1.06966 1.61633 0.99212 1.21774 0.97299 0.99562 0.89999 1.19742 0.88774 0.84995 0.84013 1.90529 1.19685 1.51286 1.85303 1.41869 1.14817 1.58485 1.04681 1.19745 0.97016 1.42138 0.83981 0.87827 1.25275 0.96555 0.97042 0.99091 1.69618 1.15281 1.45602 1.23675 0.85798 0.80045 0.77891 0.80603 1.19197 1.20754 1.20722 0.89577 0.92720 0.93138 0.89738 0.90686 0.76748 0.90529 0.90559 0.82391 0.93533 0.89262 0.77439 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.43 37.16 0.31 -0.95 16 2 C -0.09 -0.63 3.63 -88.35 -0.32 -0.95 16 3 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.09 0.54 5.26 -2.41 -0.01 0.53 16 5 N -0.60 -5.51 3.31 -171.74 -0.57 -6.07 16 6 C 0.61 6.62 7.84 -12.63 -0.10 6.52 16 7 O -0.51 -7.36 17.31 5.26 0.09 -7.27 16 8 C -0.28 -2.49 6.66 -35.96 -0.24 -2.73 16 9 C 0.07 0.64 11.55 -17.80 -0.21 0.43 16 10 N -0.25 -2.55 11.54 30.36 0.35 -2.20 16 11 N -0.27 -2.62 12.51 60.35 0.75 -1.86 16 12 S 0.43 2.89 19.59 -107.50 -2.11 0.78 16 13 C 0.08 0.79 6.20 -3.06 -0.02 0.77 16 14 C 0.08 0.76 3.03 -65.88 -0.20 0.56 16 15 H 0.10 0.83 7.90 -51.93 -0.41 0.42 16 16 N -0.65 -8.63 4.94 -106.05 -0.52 -9.15 16 17 C 0.05 0.71 6.02 -4.97 -0.03 0.68 16 18 C 0.44 9.71 7.82 -10.98 -0.09 9.63 16 19 O -0.58 -14.99 15.78 5.55 0.09 -14.90 16 20 N -0.56 -13.65 5.29 -10.97 -0.06 -13.71 16 21 C -0.30 -8.12 9.68 -14.94 -0.14 -8.26 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -23.98 13.05 55.50 0.72 -23.26 16 25 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.09 0.94 7.35 -51.93 -0.38 0.56 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.48 7.91 -51.93 -0.41 0.07 16 32 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.08 0.39 5.03 -33.28 -0.17 0.22 16 34 H 0.22 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.35 5.10 7.18 -39.29 -0.28 4.82 16 38 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 40 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -33.19 358.97 -6.84 -40.03 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.83 Total: 9.88 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.14 Total: 6.71 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.68 Total: -56.26 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.18 Total: -22.17 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.11 Total: 0.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.19 -6.84 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.477 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds