Wall clock time and date at job start Tue Mar 31 2020 23:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.88214 * 2 1 4 4 C 1.55124 * 111.19018 * 236.06607 * 2 1 3 5 5 N 1.47424 * 104.72581 * 279.18782 * 4 2 1 6 6 C 1.34777 * 125.65218 * 155.81636 * 5 4 2 7 7 O 1.21623 * 120.00245 * 179.69695 * 6 5 4 8 8 C 1.47171 * 119.99849 * 359.42447 * 6 5 4 9 9 C 1.38239 * 128.47836 * 180.27483 * 8 6 5 10 10 N 1.31238 * 111.89145 * 179.97438 * 9 8 6 11 11 N 1.27341 * 120.03768 * 0.02562 * 10 9 8 12 12 S 1.56641 * 109.73793 * 359.73046 * 11 10 9 13 13 C 1.47028 * 108.70186 * 335.55873 * 5 4 2 14 14 C 1.54322 * 107.26990 * 1.28397 * 13 5 4 15 15 H 1.09001 * 110.71973 * 263.82619 * 14 13 5 16 16 N 1.46898 * 110.71900 * 140.55832 * 14 13 5 17 17 C 1.46905 * 111.00287 * 86.45375 * 16 14 13 18 18 C 1.50700 * 109.47101 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00034 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99912 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00081 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99783 * 0.02562 * 21 20 18 23 23 C 1.38943 * 119.99902 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00018 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46840 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46977 * 120.00088 * 25 23 21 28 28 H 1.48500 * 109.47368 * 240.00506 * 25 23 21 29 29 H 1.08999 * 109.47388 * 296.11833 * 1 2 3 30 30 H 1.08999 * 109.47469 * 56.12292 * 1 2 3 31 31 H 1.09001 * 109.47312 * 176.12141 * 1 2 3 32 32 H 1.09007 * 110.49220 * 160.35187 * 4 2 1 33 33 H 1.09000 * 110.34724 * 37.95444 * 4 2 1 34 34 H 1.08003 * 124.05388 * 359.97438 * 9 8 6 35 35 H 1.09003 * 109.88466 * 120.70046 * 13 5 4 36 36 H 1.08998 * 109.88121 * 241.71192 * 13 5 4 37 37 H 1.00897 * 110.99978 * 322.49545 * 16 14 13 38 38 H 1.09001 * 109.46657 * 300.00101 * 17 16 14 39 39 H 1.09000 * 109.46775 * 59.99947 * 17 16 14 40 40 H 0.97006 * 119.99731 * 0.02562 * 20 18 17 41 41 H 0.97004 * 119.99970 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2836 -1.5927 7 8 1.8925 -4.4058 -1.1271 8 6 1.9343 -3.0907 -3.0517 9 6 1.8651 -4.0492 -4.0454 10 7 1.8749 -3.5135 -5.2434 11 7 1.9430 -2.2488 -5.3757 12 16 1.9971 -1.5715 -3.9643 13 6 2.0285 -2.2644 0.6970 14 6 2.0861 -0.8075 1.2026 15 1 3.1133 -0.5155 1.4212 16 7 1.2320 -0.6335 2.3850 17 6 1.9591 -0.9758 3.6147 18 6 1.0530 -0.7849 4.8037 19 8 -0.0862 -0.4011 4.6425 20 7 1.5085 -1.0408 6.0460 21 6 0.6844 -0.8667 7.1277 22 1 -0.3299 -0.5249 6.9842 23 6 1.1540 -1.1309 8.4084 24 7 2.3881 -1.5473 8.5829 25 14 0.0309 -0.8944 9.8823 26 1 -1.2993 -0.4225 9.4204 27 1 -0.1240 -2.1859 10.5989 28 1 0.6228 0.1126 10.7992 29 1 -0.3634 0.4524 0.9227 30 1 -0.3634 0.5728 -0.8532 31 1 -0.3634 -1.0253 -0.0695 32 1 3.1253 -0.5271 -1.3985 33 1 1.4764 -0.6458 -2.0858 34 1 1.8096 -5.1115 -3.8583 35 1 1.1218 -2.7476 1.0611 36 1 2.9049 -2.8136 1.0411 37 1 0.3854 -1.1763 2.3025 38 1 2.2833 -2.0154 3.5676 39 1 2.8298 -0.3277 3.7142 40 1 2.4198 -1.3474 6.1749 41 1 2.7158 -1.7321 9.4770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700256510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:12 Heat of formation + Delta-G solvation = -7.714845 kcal Electronic energy + Delta-G solvation = -26393.999391 eV Core-core repulsion = 22435.967592 eV Total energy + Delta-G solvation = -3958.031799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95321 -41.39065 -40.12612 -39.12893 -36.23880 -35.61374 -33.48670 -33.21584 -33.02666 -30.35650 -28.84490 -27.69835 -27.62198 -25.84854 -24.35101 -23.23082 -21.14721 -21.02888 -20.64812 -20.22187 -19.90670 -18.47257 -17.68643 -17.53307 -17.23636 -16.95445 -16.60899 -16.32009 -16.00620 -15.80109 -15.49231 -15.23229 -15.16091 -14.58320 -14.24114 -14.03598 -13.83509 -13.73188 -13.58954 -13.40219 -13.15550 -13.07966 -13.01036 -12.82640 -12.39148 -12.19984 -12.11128 -11.90054 -11.76791 -11.49852 -11.43252 -11.22132 -11.05679 -10.88681 -10.31836 -9.99636 -9.92752 -9.36083 -8.45766 -5.93873 -1.39709 -0.29436 0.39419 0.83757 1.37189 1.42786 1.55338 1.56834 1.75255 2.08011 2.29788 2.83750 2.93699 3.21077 3.22366 3.40813 3.50323 3.60073 3.72560 4.04003 4.10885 4.12493 4.34076 4.39424 4.50359 4.53231 4.60315 4.62494 4.69753 4.77087 4.86072 4.96824 5.14741 5.30936 5.42716 5.54963 5.88869 6.09073 6.12947 6.31466 6.54908 6.61627 6.72275 7.14574 7.58883 8.13956 8.71694 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.002017 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.846349 B =13875.273701 C =14301.313484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.127 0.873 4 C 0.085 3.915 5 N -0.600 5.600 6 C 0.612 3.388 7 O -0.561 6.561 8 C -0.304 4.304 9 C 0.075 3.925 10 N -0.277 5.277 11 N -0.304 5.304 12 S 0.523 5.477 13 C 0.081 3.919 14 C 0.084 3.916 15 H 0.123 0.877 16 N -0.657 5.657 17 C 0.061 3.939 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.271 1.271 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.226 0.774 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.397 0.603 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 2.625 -24.199 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.145 0.855 4 C -0.039 4.039 5 N -0.333 5.333 6 C 0.399 3.601 7 O -0.440 6.440 8 C -0.445 4.445 9 C -0.093 4.093 10 N -0.139 5.139 11 N -0.284 5.284 12 S 0.659 5.341 13 C -0.044 4.044 14 C -0.027 4.027 15 H 0.141 0.859 16 N -0.288 5.288 17 C -0.071 4.071 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.242 0.758 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.231 0.769 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.599 4.229 -25.312 26.071 hybrid contribution -0.240 -2.758 1.882 3.347 sum 4.359 1.471 -23.430 23.877 Atomic orbital electron populations 1.21673 0.94527 1.01042 1.02954 1.22404 0.96394 1.00334 0.90712 0.85489 1.23173 1.03903 0.78459 0.98325 1.48213 1.71043 1.06940 1.07092 1.16287 0.76923 0.83643 0.83277 1.90862 1.52177 1.24394 1.76600 1.27832 1.17258 1.00077 0.99363 1.24721 0.96119 1.03976 0.84509 1.70872 1.16589 1.02409 1.24064 1.78500 1.19841 1.05594 1.24485 1.82418 1.47495 1.11099 0.93076 1.22944 1.02120 1.00353 0.78961 1.22881 0.98946 0.90846 0.90019 0.85926 1.60247 1.07169 1.61614 0.99772 1.21644 0.96239 1.01308 0.87913 1.20930 0.89023 0.82526 0.85003 1.90500 1.21904 1.52442 1.86107 1.41949 1.14776 1.59414 1.05059 1.19673 0.96735 1.43903 0.85707 0.90350 1.26012 0.97952 0.96370 1.01050 1.69673 1.16193 1.45724 1.24535 0.84898 0.77968 0.78211 0.77434 1.19804 1.19834 1.19620 0.92179 0.90684 0.94591 0.86431 0.89467 0.75771 0.92703 0.90644 0.83457 0.91681 0.86755 0.76944 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.43 71.98 0.61 -1.66 16 2 C -0.08 -0.91 3.63 -9.33 -0.03 -0.94 16 3 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.08 0.74 5.26 86.93 0.46 1.20 16 5 N -0.60 -9.82 3.31 -815.50 -2.70 -12.52 16 6 C 0.61 12.67 7.84 86.59 0.68 13.35 16 7 O -0.56 -16.27 17.31 -4.10 -0.07 -16.34 16 8 C -0.30 -4.89 6.66 24.62 0.16 -4.72 16 9 C 0.07 1.25 11.55 84.78 0.98 2.23 16 10 N -0.28 -5.37 11.54 -57.87 -0.67 -6.03 16 11 N -0.30 -5.33 12.51 37.02 0.46 -4.87 16 12 S 0.52 5.48 19.59 -56.49 -1.11 4.37 16 13 C 0.08 1.51 6.20 86.73 0.54 2.05 16 14 C 0.08 1.36 3.03 46.10 0.14 1.50 16 15 H 0.12 1.51 7.90 -2.39 -0.02 1.49 16 16 N -0.66 -16.74 4.94 -489.44 -2.42 -19.16 16 17 C 0.06 1.80 6.02 85.56 0.52 2.32 16 18 C 0.44 19.53 7.82 87.66 0.69 20.21 16 19 O -0.62 -32.86 15.78 -3.05 -0.05 -32.90 16 20 N -0.57 -28.35 5.29 -307.00 -1.62 -29.98 16 21 C -0.33 -18.37 9.68 84.04 0.81 -17.55 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 24 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 25 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H 0.06 1.28 7.35 -2.39 -0.02 1.27 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.03 0.66 7.91 -2.39 -0.02 0.64 16 32 H 0.12 0.38 8.14 -2.38 -0.02 0.37 16 33 H 0.09 0.54 5.03 -14.24 -0.07 0.47 16 34 H 0.23 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.05 1.28 7.57 -2.39 -0.02 1.26 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.35 10.02 7.18 -89.70 -0.64 9.37 16 38 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 39 H 0.11 2.86 8.09 -2.39 -0.02 2.84 16 40 H 0.40 18.53 7.90 -92.70 -0.73 17.79 16 41 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -74.71 358.97 -0.18 -74.89 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.33 Total: 28.95 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 6.01 Total: 17.70 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.66 Total: -121.11 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.12 Total: -49.24 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.11 Total: 4.37 kcal Total: -74.71 -0.18 -74.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.179 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds