Wall clock time and date at job start Tue Mar 31 2020 23:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.77726 * 2 1 4 4 C 1.54326 * 110.71588 * 123.23073 * 2 1 3 5 5 N 1.47029 * 107.27004 * 140.55960 * 4 2 1 6 6 C 1.34773 * 125.64686 * 181.02575 * 5 4 2 7 7 O 1.21625 * 119.99507 * 180.02562 * 6 5 4 8 8 C 1.47168 * 120.00452 * 0.02562 * 6 5 4 9 9 C 1.38244 * 128.47996 * 180.02562 * 8 6 5 10 10 N 1.31241 * 111.89127 * 179.97438 * 9 8 6 11 11 N 1.27329 * 120.03712 * 0.02562 * 10 9 8 12 12 S 1.56642 * 109.74409 * 359.97438 * 11 10 9 13 13 C 1.47426 * 108.69994 * 1.28852 * 5 4 2 14 14 C 1.55127 * 104.72376 * 335.55243 * 13 5 4 15 15 H 1.09000 * 110.94051 * 155.28844 * 14 13 5 16 16 N 1.46900 * 111.19536 * 279.19489 * 14 13 5 17 17 C 1.46901 * 110.99978 * 267.18863 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99961 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99760 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99576 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00337 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99709 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00457 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46557 * 90.00171 * 25 23 21 27 27 H 1.48501 * 109.47177 * 209.99927 * 25 23 21 28 28 H 1.48496 * 109.46975 * 330.00740 * 25 23 21 29 29 H 1.08997 * 109.47390 * 298.22227 * 1 2 3 30 30 H 1.09008 * 109.46536 * 58.22121 * 1 2 3 31 31 H 1.08999 * 109.47137 * 178.21765 * 1 2 3 32 32 H 1.09001 * 109.88350 * 21.14296 * 4 2 1 33 33 H 1.08998 * 110.01169 * 260.04849 * 4 2 1 34 34 H 1.08003 * 124.04811 * 359.96388 * 9 8 6 35 35 H 1.08992 * 110.36518 * 94.48296 * 13 5 4 36 36 H 1.09001 * 110.36103 * 216.81022 * 13 5 4 37 37 H 1.00904 * 110.99846 * 31.13427 * 16 14 13 38 38 H 1.09004 * 109.46987 * 299.99611 * 17 16 14 39 39 H 1.08996 * 109.47496 * 59.99385 * 17 16 14 40 40 H 0.96991 * 120.00687 * 0.02562 * 20 18 17 41 41 H 0.97001 * 120.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0759 -0.7910 1.2074 5 7 3.2445 -1.5507 0.7393 6 6 3.9922 -2.3834 1.4902 7 8 4.9409 -2.9617 0.9955 8 6 3.6606 -2.5931 2.9087 9 6 4.3012 -3.3985 3.8318 10 7 3.7293 -3.3409 5.0117 11 7 2.7079 -2.6018 5.1894 12 16 2.3419 -1.8740 3.8514 13 6 3.4666 -1.2456 -0.6858 14 6 2.0791 -0.7955 -1.2136 15 1 2.1845 -0.1521 -2.0871 16 7 1.2249 -1.9520 -1.5150 17 6 1.3504 -2.3460 -2.9246 18 6 0.4622 -3.5330 -3.1955 19 8 -0.2097 -4.0041 -2.3022 20 7 0.4137 -4.0704 -4.4305 21 6 -0.3947 -5.1499 -4.6770 22 1 -0.9923 -5.5699 -3.8815 23 6 -0.4452 -5.7037 -5.9504 24 7 0.2823 -5.1930 -6.9183 25 14 -1.5461 -7.1750 -6.2861 26 1 -2.8889 -6.7022 -6.7086 27 1 -0.9506 -8.0028 -7.3657 28 1 -1.6741 -7.9895 -5.0511 29 1 -0.3634 0.4860 0.9055 30 1 -0.3633 0.5413 -0.8737 31 1 -0.3633 -1.0272 -0.0320 32 1 1.3128 -1.4757 1.5777 33 1 2.3734 -0.1041 1.9997 34 1 5.1682 -4.0027 3.6087 35 1 4.1947 -0.4415 -0.7926 36 1 3.8031 -2.1363 -1.2164 37 1 1.4353 -2.7263 -0.9031 38 1 1.0505 -1.5144 -3.5624 39 1 2.3859 -2.6116 -3.1369 40 1 0.9506 -3.6935 -5.1449 41 1 0.2473 -5.5798 -7.8071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700256511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:16 Heat of formation + Delta-G solvation = 16.084915 kcal Electronic energy + Delta-G solvation = -26804.250446 eV Core-core repulsion = 22847.250683 eV Total energy + Delta-G solvation = -3956.999764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15675 -40.53943 -38.59019 -37.89562 -34.71164 -33.85634 -32.67610 -32.43443 -31.25243 -29.58438 -27.85322 -26.59627 -26.30550 -24.24520 -23.51277 -22.26485 -20.30495 -19.97917 -19.49265 -19.28446 -17.97825 -17.47233 -16.95913 -16.42516 -16.00904 -15.90740 -15.33390 -15.03641 -14.85906 -14.59985 -14.07435 -14.04436 -13.70480 -13.47502 -13.42166 -13.22239 -12.85036 -12.54084 -12.30990 -12.27038 -12.03407 -11.80526 -11.58158 -11.41598 -11.16741 -11.06353 -10.90246 -10.52771 -10.43367 -10.41947 -10.34378 -10.25132 -10.16872 -9.54577 -9.17043 -8.53854 -8.16957 -8.00204 -6.45229 -3.86179 -0.61390 0.45028 1.14896 1.63396 2.39698 2.61759 3.15613 3.24734 3.30427 3.64121 3.85416 3.89560 4.00504 4.12641 4.24755 4.35128 4.45320 4.63055 4.87513 5.03572 5.07089 5.15835 5.22211 5.23985 5.32569 5.39472 5.49337 5.54272 5.73470 5.75901 5.84308 5.93931 6.00261 6.20633 6.49933 6.93734 7.05279 7.30270 7.45554 7.51999 7.59855 8.02132 8.56719 9.14180 9.49956 10.00796 10.72381 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.002574 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.418742 B =10877.369462 C =11455.177602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.089 0.911 4 C 0.085 3.915 5 N -0.606 5.606 6 C 0.615 3.385 7 O -0.516 6.516 8 C -0.284 4.284 9 C 0.073 3.927 10 N -0.252 5.252 11 N -0.269 5.269 12 S 0.436 5.564 13 C 0.076 3.924 14 C 0.076 3.924 15 H 0.106 0.894 16 N -0.650 5.650 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.216 0.784 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.352 0.648 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.392 0.608 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.713 14.415 15.442 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.108 0.892 4 C -0.039 4.039 5 N -0.340 5.340 6 C 0.401 3.599 7 O -0.392 6.392 8 C -0.425 4.425 9 C -0.094 4.094 10 N -0.116 5.116 11 N -0.250 5.250 12 S 0.572 5.428 13 C -0.047 4.047 14 C -0.036 4.036 15 H 0.124 0.876 16 N -0.281 5.281 17 C -0.084 4.084 18 C 0.225 3.775 19 O -0.468 6.468 20 N -0.198 5.198 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.172 0.828 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.225 0.775 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.994 14.530 16.950 22.877 hybrid contribution 1.860 -1.511 -1.567 2.863 sum 6.854 13.019 15.383 21.286 Atomic orbital electron populations 1.21609 0.92112 1.04345 1.01026 1.22230 0.98146 0.97989 0.92108 0.89240 1.22513 0.87653 0.95353 0.98417 1.48235 1.29882 1.43923 1.11992 1.16037 0.82284 0.79092 0.82511 1.90882 1.28278 1.48111 1.71959 1.27953 1.04548 1.08683 1.01340 1.24485 1.01259 0.97894 0.85748 1.70777 1.03871 1.15267 1.21685 1.78750 1.12611 1.11264 1.22365 1.82867 1.24410 1.36994 0.98562 1.23204 0.99472 1.02019 0.80045 1.22934 0.88412 0.94219 0.98044 0.87650 1.60095 1.54355 1.09392 1.04239 1.21753 0.98221 0.98451 0.89991 1.19752 0.87097 0.86613 0.84027 1.90527 1.47142 1.64464 1.44704 1.41855 1.40205 1.28807 1.08975 1.19694 1.20732 1.06409 0.96108 0.87929 1.25260 0.97974 0.99394 0.95232 1.69604 1.40291 1.41946 1.02387 0.85864 0.79576 0.80676 0.78224 1.20359 1.20908 1.19409 0.93367 0.92012 0.89976 0.90139 0.90923 0.76778 0.90254 0.89657 0.82781 0.89255 0.93679 0.77452 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.81 37.16 0.33 -0.81 16 2 C -0.08 -0.63 3.46 -88.79 -0.31 -0.94 16 3 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 4 C 0.08 0.65 4.85 -3.06 -0.01 0.63 16 5 N -0.61 -6.10 3.26 -171.74 -0.56 -6.66 16 6 C 0.62 7.39 7.84 -12.64 -0.10 7.29 16 7 O -0.52 -7.89 17.23 5.26 0.09 -7.79 16 8 C -0.28 -2.91 6.67 -35.96 -0.24 -3.15 16 9 C 0.07 0.74 11.55 -17.80 -0.21 0.54 16 10 N -0.25 -2.91 11.54 30.36 0.35 -2.56 16 11 N -0.27 -2.98 12.51 60.35 0.75 -2.23 16 12 S 0.44 3.61 19.63 -107.50 -2.11 1.50 16 13 C 0.08 0.74 6.35 -2.41 -0.02 0.72 16 14 C 0.08 0.71 3.13 -65.45 -0.21 0.50 16 15 H 0.11 0.84 7.83 -51.93 -0.41 0.44 16 16 N -0.65 -8.83 4.55 -105.60 -0.48 -9.31 16 17 C 0.05 0.76 6.03 -4.97 -0.03 0.73 16 18 C 0.44 9.87 7.82 -10.99 -0.09 9.78 16 19 O -0.58 -15.21 15.78 5.55 0.09 -15.12 16 20 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 25 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.94 7.21 -51.93 -0.37 0.56 16 32 H 0.08 0.64 6.70 -51.93 -0.35 0.30 16 33 H 0.07 0.41 7.16 -51.93 -0.37 0.04 16 34 H 0.22 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.00 8.03 -51.93 -0.42 0.59 16 37 H 0.35 5.44 8.10 -39.29 -0.32 5.12 16 38 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -33.37 360.65 -6.93 -40.30 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.03 Total: 10.49 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.12 Total: 7.44 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.73 Total: -58.08 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.18 Total: -22.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.11 Total: 1.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.37 -6.93 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.383 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds