Wall clock time and date at job start Tue Mar 31 2020 23:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.77726 * 2 1 4 4 C 1.54326 * 110.71588 * 123.23073 * 2 1 3 5 5 N 1.47029 * 107.27004 * 140.55960 * 4 2 1 6 6 C 1.34773 * 125.64686 * 181.02575 * 5 4 2 7 7 O 1.21625 * 119.99507 * 180.02562 * 6 5 4 8 8 C 1.47168 * 120.00452 * 0.02562 * 6 5 4 9 9 C 1.38244 * 128.47996 * 180.02562 * 8 6 5 10 10 N 1.31241 * 111.89127 * 179.97438 * 9 8 6 11 11 N 1.27329 * 120.03712 * 0.02562 * 10 9 8 12 12 S 1.56642 * 109.74409 * 359.97438 * 11 10 9 13 13 C 1.47426 * 108.69994 * 1.28852 * 5 4 2 14 14 C 1.55127 * 104.72376 * 335.55243 * 13 5 4 15 15 H 1.09000 * 110.94051 * 155.28844 * 14 13 5 16 16 N 1.46900 * 111.19536 * 279.19489 * 14 13 5 17 17 C 1.46901 * 110.99978 * 267.18863 * 16 14 13 18 18 C 1.50701 * 109.47356 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99961 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99760 * 179.97438 * 18 17 16 21 21 C 1.37103 * 119.99576 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00337 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99709 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00457 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46557 * 90.00171 * 25 23 21 27 27 H 1.48501 * 109.47177 * 209.99927 * 25 23 21 28 28 H 1.48496 * 109.46975 * 330.00740 * 25 23 21 29 29 H 1.08997 * 109.47390 * 298.22227 * 1 2 3 30 30 H 1.09008 * 109.46536 * 58.22121 * 1 2 3 31 31 H 1.08999 * 109.47137 * 178.21765 * 1 2 3 32 32 H 1.09001 * 109.88350 * 21.14296 * 4 2 1 33 33 H 1.08998 * 110.01169 * 260.04849 * 4 2 1 34 34 H 1.08003 * 124.04811 * 359.96388 * 9 8 6 35 35 H 1.08992 * 110.36518 * 94.48296 * 13 5 4 36 36 H 1.09001 * 110.36103 * 216.81022 * 13 5 4 37 37 H 1.00904 * 110.99846 * 31.13427 * 16 14 13 38 38 H 1.09004 * 109.46987 * 299.99611 * 17 16 14 39 39 H 1.08996 * 109.47496 * 59.99385 * 17 16 14 40 40 H 0.96991 * 120.00687 * 0.02562 * 20 18 17 41 41 H 0.97001 * 120.00173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0759 -0.7910 1.2074 5 7 3.2445 -1.5507 0.7393 6 6 3.9922 -2.3834 1.4902 7 8 4.9409 -2.9617 0.9955 8 6 3.6606 -2.5931 2.9087 9 6 4.3012 -3.3985 3.8318 10 7 3.7293 -3.3409 5.0117 11 7 2.7079 -2.6018 5.1894 12 16 2.3419 -1.8740 3.8514 13 6 3.4666 -1.2456 -0.6858 14 6 2.0791 -0.7955 -1.2136 15 1 2.1845 -0.1521 -2.0871 16 7 1.2249 -1.9520 -1.5150 17 6 1.3504 -2.3460 -2.9246 18 6 0.4622 -3.5330 -3.1955 19 8 -0.2097 -4.0041 -2.3022 20 7 0.4137 -4.0704 -4.4305 21 6 -0.3947 -5.1499 -4.6770 22 1 -0.9923 -5.5699 -3.8815 23 6 -0.4452 -5.7037 -5.9504 24 7 0.2823 -5.1930 -6.9183 25 14 -1.5461 -7.1750 -6.2861 26 1 -2.8889 -6.7022 -6.7086 27 1 -0.9506 -8.0028 -7.3657 28 1 -1.6741 -7.9895 -5.0511 29 1 -0.3634 0.4860 0.9055 30 1 -0.3633 0.5413 -0.8737 31 1 -0.3633 -1.0272 -0.0320 32 1 1.3128 -1.4757 1.5777 33 1 2.3734 -0.1041 1.9997 34 1 5.1682 -4.0027 3.6087 35 1 4.1947 -0.4415 -0.7926 36 1 3.8031 -2.1363 -1.2164 37 1 1.4353 -2.7263 -0.9031 38 1 1.0505 -1.5144 -3.5624 39 1 2.3859 -2.6116 -3.1369 40 1 0.9506 -3.6935 -5.1449 41 1 0.2473 -5.5798 -7.8071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700256511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:15 Heat of formation + Delta-G solvation = -10.002206 kcal Electronic energy + Delta-G solvation = -26805.381669 eV Core-core repulsion = 22847.250683 eV Total energy + Delta-G solvation = -3958.130986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96036 -41.36461 -40.10913 -39.08150 -36.14048 -35.45429 -33.58162 -33.21878 -33.18216 -30.49426 -28.77875 -27.76417 -27.27874 -25.80871 -24.44676 -23.02269 -21.17573 -21.08473 -20.66535 -20.18645 -19.91479 -18.36792 -17.80071 -17.65678 -17.21271 -16.86926 -16.55231 -16.34426 -16.00759 -15.75651 -15.54823 -15.29875 -14.88395 -14.46348 -14.29598 -14.09084 -13.91410 -13.64120 -13.53501 -13.27938 -13.21225 -13.04999 -12.86673 -12.75099 -12.42250 -12.19237 -12.13007 -11.87835 -11.62201 -11.50305 -11.41133 -11.23399 -11.10194 -10.91848 -10.33451 -10.01451 -9.97477 -9.26565 -8.46942 -5.95221 -1.40420 -0.29353 0.39596 0.81915 1.37272 1.41194 1.53413 1.60358 1.75725 2.06952 2.28526 2.86198 2.89853 3.20707 3.22275 3.43277 3.50195 3.59044 3.75681 3.99439 4.21177 4.29294 4.38217 4.43323 4.51329 4.53078 4.64766 4.67191 4.72812 4.84179 4.91050 5.02375 5.27052 5.34972 5.40927 5.78483 5.89997 6.09955 6.13814 6.30523 6.52829 6.60504 6.72780 7.13205 7.57573 8.12885 8.70414 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.002574 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.418742 B =10877.369462 C =11455.177602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 H 0.125 0.875 4 C 0.076 3.924 5 N -0.604 5.604 6 C 0.612 3.388 7 O -0.560 6.560 8 C -0.305 4.305 9 C 0.073 3.927 10 N -0.276 5.276 11 N -0.301 5.301 12 S 0.518 5.482 13 C 0.076 3.924 14 C 0.075 3.925 15 H 0.129 0.871 16 N -0.657 5.657 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.338 0.662 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 16.633 15.506 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 H 0.143 0.857 4 C -0.047 4.047 5 N -0.336 5.336 6 C 0.399 3.601 7 O -0.440 6.440 8 C -0.446 4.446 9 C -0.095 4.095 10 N -0.139 5.139 11 N -0.282 5.282 12 S 0.654 5.346 13 C -0.047 4.047 14 C -0.036 4.036 15 H 0.147 0.853 16 N -0.287 5.287 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.243 0.757 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.834 16.800 17.017 24.397 hybrid contribution 1.834 -2.102 -1.561 3.197 sum 6.668 14.698 15.456 22.347 Atomic orbital electron populations 1.21551 0.92888 1.02353 1.02044 1.22272 0.97308 0.99245 0.90433 0.85669 1.22767 0.86763 0.95626 0.99571 1.48326 1.29897 1.43265 1.12126 1.16228 0.81972 0.78868 0.83081 1.90852 1.30266 1.49906 1.72956 1.27904 1.06012 1.09787 1.00900 1.24723 1.01498 0.97825 0.85452 1.70828 1.04459 1.16198 1.22395 1.78513 1.13024 1.12201 1.24434 1.82457 1.21724 1.34381 0.96047 1.23250 1.00154 1.01702 0.79596 1.23118 0.87619 0.92884 0.99939 0.85315 1.60133 1.56137 1.09935 1.02537 1.21620 0.97224 0.96035 0.91984 1.20956 0.86564 0.87380 0.82629 1.90496 1.48833 1.65994 1.45718 1.41934 1.40440 1.28760 1.10018 1.19633 1.22161 1.08264 0.96173 0.90476 1.25993 0.98987 1.01580 0.94627 1.69660 1.40887 1.42857 1.02691 0.84975 0.78172 0.77566 0.77927 1.19513 1.19635 1.19951 0.91197 0.92303 0.93323 0.90610 0.88027 0.75673 0.87768 0.92173 0.84344 0.86669 0.92009 0.76957 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.81 71.98 0.63 -1.24 16 2 C -0.07 -0.81 3.46 -9.61 -0.03 -0.84 16 3 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 4 C 0.08 0.94 4.85 86.73 0.42 1.36 16 5 N -0.60 -11.13 3.26 -815.51 -2.66 -13.80 16 6 C 0.61 14.40 7.84 86.59 0.68 15.08 16 7 O -0.56 -17.43 17.23 -4.11 -0.07 -17.50 16 8 C -0.31 -6.04 6.67 24.62 0.16 -5.87 16 9 C 0.07 1.48 11.55 84.78 0.98 2.46 16 10 N -0.28 -6.30 11.54 -57.87 -0.67 -6.97 16 11 N -0.30 -6.38 12.51 37.02 0.46 -5.92 16 12 S 0.52 7.62 19.63 -56.49 -1.11 6.52 16 13 C 0.08 1.32 6.35 86.93 0.55 1.88 16 14 C 0.08 1.19 3.13 46.38 0.15 1.34 16 15 H 0.13 1.51 7.83 -2.39 -0.02 1.49 16 16 N -0.66 -17.12 4.55 -488.02 -2.22 -19.34 16 17 C 0.06 1.92 6.03 85.56 0.52 2.44 16 18 C 0.44 19.88 7.82 87.66 0.69 20.56 16 19 O -0.62 -33.46 15.78 -3.07 -0.05 -33.51 16 20 N -0.57 -28.75 5.29 -306.98 -1.62 -30.37 16 21 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 25 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 1.05 7.21 -2.39 -0.02 1.03 16 32 H 0.08 1.04 6.70 -2.39 -0.02 1.02 16 33 H 0.10 0.70 7.16 -2.39 -0.02 0.69 16 34 H 0.23 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.38 8.03 -2.39 -0.02 1.36 16 37 H 0.34 10.45 8.10 -89.69 -0.73 9.72 16 38 H 0.12 2.94 8.09 -2.38 -0.02 2.92 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.40 18.78 7.90 -92.72 -0.73 18.05 16 41 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -75.36 360.65 0.04 -75.32 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.36 Total: 30.59 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.02 Total: 19.07 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.43 Total: -125.35 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.12 Total: -51.01 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 7.62 SS G_CDS: -1.11 Total: 6.52 kcal Total: -75.36 0.04 -75.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.320 kcal (2) G-P(sol) polarization free energy of solvation -75.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds