Wall clock time and date at job start Tue Mar 31 2020 23:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.30805 * 2 1 4 4 C 1.54390 * 110.34342 * 122.29219 * 2 1 3 5 5 N 1.48440 * 104.65449 * 142.74073 * 4 2 1 6 6 C 1.34774 * 127.98285 * 140.36976 * 5 4 2 7 7 O 1.21625 * 119.99615 * 176.22609 * 6 5 4 8 8 C 1.47164 * 120.00246 * 356.22904 * 6 5 4 9 9 C 1.38243 * 128.47937 * 186.29627 * 8 6 5 10 10 N 1.31238 * 111.89326 * 179.80815 * 9 8 6 11 11 N 1.27333 * 120.03606 * 0.53569 * 10 9 8 12 12 S 1.56638 * 109.74287 * 359.68921 * 11 10 9 13 13 C 1.48148 * 104.17657 * 320.43876 * 5 4 2 14 14 C 1.54286 * 110.34358 * 237.83002 * 2 1 3 15 15 H 1.08996 * 110.43198 * 0.04117 * 14 2 1 16 16 N 1.46901 * 110.34554 * 122.25738 * 14 2 1 17 17 C 1.46900 * 110.99823 * 201.98947 * 16 14 2 18 18 C 1.50698 * 109.46851 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00284 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99932 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00030 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99827 * 359.97438 * 21 20 18 23 23 C 1.38943 * 119.99910 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00545 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99888 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46950 * 89.99899 * 25 23 21 27 27 H 1.48502 * 109.46981 * 209.99774 * 25 23 21 28 28 H 1.48495 * 109.46844 * 329.99803 * 25 23 21 29 29 H 1.09007 * 109.47149 * 182.17585 * 1 2 3 30 30 H 1.09002 * 109.46888 * 302.16977 * 1 2 3 31 31 H 1.08996 * 109.47634 * 62.17247 * 1 2 3 32 32 H 1.09003 * 110.40792 * 261.51979 * 4 2 1 33 33 H 1.08991 * 110.41067 * 23.83418 * 4 2 1 34 34 H 1.08004 * 124.05556 * 359.97438 * 9 8 6 35 35 H 1.09000 * 110.40953 * 280.72938 * 13 5 4 36 36 H 1.09000 * 110.40205 * 158.41622 * 13 5 4 37 37 H 1.00905 * 110.99759 * 78.03785 * 16 14 2 38 38 H 1.08999 * 109.47491 * 300.00107 * 17 16 14 39 39 H 1.09004 * 109.46811 * 60.00074 * 17 16 14 40 40 H 0.97001 * 119.99996 * 359.97438 * 20 18 17 41 41 H 0.96994 * 120.00813 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7734 1.2237 5 7 3.2689 -1.4842 0.7210 6 6 4.4460 -1.6704 1.3503 7 8 5.3166 -2.3389 0.8263 8 6 4.6780 -1.0651 2.6715 9 6 5.8439 -1.0411 3.4140 10 7 5.6865 -0.4061 4.5517 11 7 4.5524 0.0871 4.8547 12 16 3.5281 -0.1948 3.7037 13 6 2.8801 -1.9416 -0.6334 14 6 2.0663 -0.7702 -1.2245 15 1 1.2409 -1.1486 -1.8275 16 7 2.9331 0.0968 -2.0337 17 6 3.0298 -0.3963 -3.4141 18 6 3.9255 0.5161 -4.2118 19 8 4.4330 1.4823 -3.6826 20 7 4.1619 0.2590 -5.5135 21 6 4.9772 1.0887 -6.2391 22 1 5.4297 1.9486 -5.7677 23 6 5.2213 0.8234 -7.5810 24 7 4.6711 -0.2232 -8.1545 25 14 6.3316 1.9543 -8.5698 26 1 7.7344 1.4764 -8.4763 27 1 5.9014 1.9516 -9.9911 28 1 6.2415 3.3340 -8.0280 29 1 -0.3634 -1.0270 0.0390 30 1 -0.3633 0.5472 0.8699 31 1 -0.3634 0.4797 -0.9088 32 1 2.3400 -0.0816 2.0205 33 1 1.3227 -1.4862 1.5791 34 1 6.7735 -1.4887 3.0948 35 1 2.2639 -2.8384 -0.5694 36 1 3.7661 -2.1325 -1.2389 37 1 3.8476 0.1848 -1.6163 38 1 3.4469 -1.4033 -3.4119 39 1 2.0369 -0.4152 -3.8635 40 1 3.7558 -0.5135 -5.9369 41 1 4.8412 -0.4082 -9.0913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700256512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:19 Heat of formation + Delta-G solvation = 19.553577 kcal Electronic energy + Delta-G solvation = -26598.049692 eV Core-core repulsion = 22641.200341 eV Total energy + Delta-G solvation = -3956.849351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17303 -40.48344 -38.57556 -37.91627 -34.78399 -33.83962 -32.89329 -32.45190 -31.24166 -29.38321 -27.90874 -26.80433 -26.24329 -24.41132 -23.27419 -22.37969 -20.45990 -20.19273 -19.50409 -19.20741 -17.92357 -17.50995 -16.83748 -16.38901 -16.17097 -15.87255 -15.31147 -15.10169 -14.94860 -14.54051 -14.38782 -14.01256 -13.86695 -13.55350 -13.30851 -13.04808 -12.88444 -12.72902 -12.48347 -12.22032 -12.13187 -11.67796 -11.58750 -11.44034 -11.23841 -11.14328 -11.03940 -10.55576 -10.47048 -10.40480 -10.32358 -10.23468 -10.16690 -9.53097 -9.34130 -8.51349 -8.14525 -7.98445 -6.43597 -3.84471 -0.65160 0.39491 1.07431 1.61888 2.30601 2.59383 3.16986 3.25855 3.31684 3.60871 3.87346 3.92335 3.96318 4.10169 4.22750 4.32324 4.48722 4.63651 4.85161 4.91529 5.05827 5.07875 5.16477 5.20792 5.23743 5.33940 5.35534 5.45957 5.65768 5.70562 5.76343 5.89724 5.91419 6.01899 6.23912 6.93482 7.10703 7.27720 7.48510 7.53658 7.57413 8.03955 8.58663 9.15931 9.51671 10.02826 10.74076 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.002458 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.859981 B =11390.618126 C =12232.063040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.101 0.899 4 C 0.096 3.904 5 N -0.615 5.615 6 C 0.621 3.379 7 O -0.512 6.512 8 C -0.282 4.282 9 C 0.075 3.925 10 N -0.250 5.250 11 N -0.271 5.271 12 S 0.429 5.571 13 C 0.075 3.925 14 C 0.078 3.922 15 H 0.102 0.898 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.217 0.783 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.352 0.648 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -5.768 20.780 24.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.119 0.881 4 C -0.029 4.029 5 N -0.349 5.349 6 C 0.407 3.593 7 O -0.387 6.387 8 C -0.423 4.423 9 C -0.092 4.092 10 N -0.114 5.114 11 N -0.251 5.251 12 S 0.565 5.435 13 C -0.048 4.048 14 C -0.035 4.035 15 H 0.120 0.880 16 N -0.288 5.288 17 C -0.085 4.085 18 C 0.225 3.775 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.173 0.827 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.971 -4.089 22.029 24.947 hybrid contribution 1.817 -1.501 -1.652 2.878 sum -9.154 -5.590 20.378 23.028 Atomic orbital electron populations 1.21800 0.93172 1.02036 1.02863 1.22168 0.96544 1.00933 0.91997 0.88108 1.22992 0.86812 0.95699 0.97366 1.48761 1.12342 1.55583 1.18254 1.15991 0.81103 0.80201 0.82025 1.90901 1.42897 1.39253 1.65697 1.27943 0.99278 1.11755 1.03322 1.24517 1.00119 0.96404 0.88132 1.70805 1.13118 1.10326 1.17190 1.78757 1.01822 1.20750 1.23767 1.82737 1.20679 1.36287 1.03829 1.23333 1.00613 0.98485 0.82418 1.22730 0.96249 0.90310 0.94172 0.87979 1.60228 1.18639 1.48625 1.01269 1.21748 1.00727 0.96477 0.89528 1.19763 0.86263 0.88183 0.83279 1.90531 1.54742 1.31063 1.70440 1.41857 1.43406 1.26554 1.08083 1.19698 1.23487 1.07812 0.91892 0.87937 1.25258 0.98309 0.97262 0.97056 1.69604 1.44261 1.27139 1.13281 0.85861 0.79736 0.80284 0.78446 1.20396 1.20896 1.19389 0.92406 0.92145 0.91313 0.91081 0.89337 0.76693 0.90056 0.89215 0.82748 0.93670 0.89307 0.77450 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.93 37.15 0.33 -0.46 16 2 C -0.10 -0.74 3.45 -89.22 -0.31 -1.05 16 3 H 0.10 0.95 7.95 -51.93 -0.41 0.54 16 4 C 0.10 0.64 6.08 -2.24 -0.01 0.62 16 5 N -0.62 -6.01 3.33 -170.42 -0.57 -6.58 16 6 C 0.62 7.40 7.90 -12.64 -0.10 7.30 16 7 O -0.51 -7.91 17.28 5.26 0.09 -7.82 16 8 C -0.28 -2.82 6.69 -35.96 -0.24 -3.06 16 9 C 0.07 0.75 11.55 -17.80 -0.21 0.54 16 10 N -0.25 -2.83 11.54 30.36 0.35 -2.48 16 11 N -0.27 -2.90 12.51 60.35 0.75 -2.14 16 12 S 0.43 3.31 19.72 -107.50 -2.12 1.19 16 13 C 0.08 0.73 6.42 -2.40 -0.02 0.72 16 14 C 0.08 0.75 3.01 -66.31 -0.20 0.55 16 15 H 0.10 0.86 7.44 -51.93 -0.39 0.47 16 16 N -0.66 -9.51 5.78 -106.51 -0.62 -10.13 16 17 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 18 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 19 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 20 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.06 0.26 8.10 -51.92 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.42 4.24 -27.56 -0.12 0.30 16 33 H 0.09 0.39 7.83 -51.93 -0.41 -0.02 16 34 H 0.22 1.74 8.06 -52.48 -0.42 1.31 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.09 7.46 -51.93 -0.39 0.70 16 37 H 0.35 5.77 8.19 -39.29 -0.32 5.45 16 38 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 39 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 40 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -34.33 361.06 -6.84 -41.17 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.80 Total: 10.65 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.11 Total: 8.01 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.59 Total: -59.06 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.18 Total: -23.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.12 Total: 1.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.33 -6.84 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700256512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.724 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds